RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 TMEM68Q96MH6 324 aa13.91□□□□□ -0.18
CIITA-204ENST00000570546 BCO1Q9HAY6 547 aa13.91□□□□□ -0.18
CIITA-204ENST00000570546 ANKRD10Q9NXR5 420 aa13.91□□□□□ -0.18
CIITA-204ENST00000570546 NRXN2Q9P2S2 1712 aa13.91□□□□□ -0.18
CIITA-204ENST00000570546 CTSVO60911 334 aa13.91□□□□□ -0.18
CIITA-204ENST00000570546 TUSC2O75896 110 aa13.91□□□□□ -0.18
CIITA-204ENST00000570546 AKR1C1Q04828 323 aa13.91□□□□□ -0.18
CIITA-204ENST00000570546 SHEQ5VZ18 495 aa13.91□□□□□ -0.18
CIITA-204ENST00000570546 LYG2Q86SG7 212 aa13.91□□□□□ -0.18
CIITA-204ENST00000570546 SUMF1Q8NBK3 374 aa13.91□□□□□ -0.18
CIITA-204ENST00000570546 UPRTQ96BW1 309 aa13.91□□□□□ -0.18
CIITA-204ENST00000570546 COX14Q96I36 57 aa13.91□□□□□ -0.18
CIITA-204ENST00000570546 ZNF2Q9BSG1 426 aaPredicted RBP13.91□□□□□ -0.18
CIITA-204ENST00000570546 ZNF576Q9H609 170 aa13.91□□□□□ -0.18
CIITA-204ENST00000570546 PADI1Q9ULC6 663 aa13.91□□□□□ -0.18
CIITA-204ENST00000570546 A0A1W2PPC4 97 aa13.9□□□□□ -0.18
CIITA-204ENST00000570546 NUDT19A8MXV4 375 aa13.9□□□□□ -0.18
CIITA-204ENST00000570546 HSD17B6O14756 317 aa13.9□□□□□ -0.18
CIITA-204ENST00000570546 NXPH3O95157 252 aa13.9□□□□□ -0.18
CIITA-204ENST00000570546 MSL3P1P0C860 447 aa13.9□□□□□ -0.18
CIITA-204ENST00000570546 ZIC1Q15915 447 aa13.9□□□□□ -0.18
CIITA-204ENST00000570546 TEX19Q8NA77 164 aa13.9□□□□□ -0.18
CIITA-204ENST00000570546 OR4D11Q8NGI4 311 aa13.9□□□□□ -0.18
CIITA-204ENST00000570546 TMEM100Q9NV29 134 aa13.9□□□□□ -0.18
CIITA-204ENST00000570546 HRH3Q9Y5N1 445 aa13.9□□□□□ -0.18
CIITA-204ENST00000570546 LINC01565O15544 149 aa13.9□□□□□ -0.18
CIITA-204ENST00000570546 IL5P05113 134 aa13.9□□□□□ -0.18
CIITA-204ENST00000570546 GPR85P60893 370 aa13.9□□□□□ -0.18
CIITA-204ENST00000570546 PRICKLE4Q2TBC4 344 aa13.9□□□□□ -0.18
CIITA-204ENST00000570546 TMEM229BQ8NBD8 167 aa13.9□□□□□ -0.18
CIITA-204ENST00000570546 ASB13Q8WXK3 278 aa13.9□□□□□ -0.18
CIITA-204ENST00000570546 ZNF629Q9UEG4 869 aaPredicted RBP13.9□□□□□ -0.18
CIITA-204ENST00000570546 SIT1Q9Y3P8 196 aa13.9□□□□□ -0.18
CIITA-204ENST00000570546 ZNF587BE7ETH6 402 aa13.9□□□□□ -0.18
CIITA-204ENST00000570546 TAAR5O14804 337 aa13.9□□□□□ -0.18
CIITA-204ENST00000570546 F10P00742 488 aa13.9□□□□□ -0.18
CIITA-204ENST00000570546 SLC25A1P53007 311 aa13.9□□□□□ -0.18
CIITA-204ENST00000570546 CATR1Q13166 79 aa13.9□□□□□ -0.18
CIITA-204ENST00000570546 ST3GAL2Q16842 350 aa13.9□□□□□ -0.18
CIITA-204ENST00000570546 CPEB2Q7Z5Q1 589 aaKnown RBP13.9□□□□□ -0.18
CIITA-204ENST00000570546 WDSUB1Q8N9V3 476 aa13.9□□□□□ -0.18
CIITA-204ENST00000570546 OR51A2Q8NGJ7 313 aa13.9□□□□□ -0.18
CIITA-204ENST00000570546 OTOSQ8NHW6 89 aa13.9□□□□□ -0.18
CIITA-204ENST00000570546 CTSFQ9UBX1 484 aa13.9□□□□□ -0.18
CIITA-204ENST00000570546 CD46P15529 392 aa13.9□□□□□ -0.18
CIITA-204ENST00000570546 MGMTP16455 207 aa13.9□□□□□ -0.18
CIITA-204ENST00000570546 OR51A4Q8NGJ6 313 aa13.9□□□□□ -0.18
CIITA-204ENST00000570546 TMED6Q8WW62 240 aa13.9□□□□□ -0.18
CIITA-204ENST00000570546 C3orf49Q96BT1 292 aa13.9□□□□□ -0.18
CIITA-204ENST00000570546 SLC5A6Q9Y289 635 aa13.9□□□□□ -0.18
CIITA-204ENST00000570546 SLC17A2O00624 439 aa13.89□□□□□ -0.19
CIITA-204ENST00000570546 CDC42EP2O14613 210 aa13.89□□□□□ -0.19
CIITA-204ENST00000570546 HBG1P69891 147 aa13.89□□□□□ -0.19
CIITA-204ENST00000570546 HBG2P69892 147 aa13.89□□□□□ -0.19
CIITA-204ENST00000570546 ATOH1Q92858 354 aaPredicted RBP13.89□□□□□ -0.19
CIITA-204ENST00000570546 LGALS8O00214 317 aa13.89□□□□□ -0.19
CIITA-204ENST00000570546 TBPP20226 339 aa13.89□□□□□ -0.19
CIITA-204ENST00000570546 ZFP36L2P47974 494 aaKnown RBP13.89□□□□□ -0.19
CIITA-204ENST00000570546 IRF3Q14653 427 aa13.89□□□□□ -0.19
CIITA-204ENST00000570546 EXD3Q8N9H8 876 aa13.89□□□□□ -0.19
CIITA-204ENST00000570546 ZBTB44Q8NCP5 570 aa13.89□□□□□ -0.19
CIITA-204ENST00000570546 EDAQ92838 391 aa13.89□□□□□ -0.19
CIITA-204ENST00000570546 RNF32Q9H0A6 362 aa13.89□□□□□ -0.19
CIITA-204ENST00000570546 NUMA1Q14980 2115 aa13.89□□□□□ -0.19
CIITA-204ENST00000570546 SDCBPO00560 298 aaPredicted RBP13.89□□□□□ -0.19
CIITA-204ENST00000570546 HIST2H3PS2Q5TEC6 136 aa13.89□□□□□ -0.19
CIITA-204ENST00000570546 C17orf47Q8NEP4 570 aa13.89□□□□□ -0.19
CIITA-204ENST00000570546 OR1S2Q8NGQ3 325 aa13.89□□□□□ -0.19
CIITA-204ENST00000570546 MARCH1Q8TCQ1 289 aa13.89□□□□□ -0.19
CIITA-204ENST00000570546 WDR89Q96FK6 387 aaPredicted RBP13.89□□□□□ -0.19
CIITA-204ENST00000570546 OR8B4Q96RC9 309 aa13.89□□□□□ -0.19
CIITA-204ENST00000570546 NRTNQ99748 197 aa13.89□□□□□ -0.19
CIITA-204ENST00000570546 PARP12Q9H0J9 701 aaKnown RBP13.89□□□□□ -0.19
CIITA-204ENST00000570546 PRMT8Q9NR22 394 aaPredicted RBP13.89□□□□□ -0.19
CIITA-204ENST00000570546 FBXO34Q9NWN3 711 aa13.89□□□□□ -0.19
CIITA-204ENST00000570546 GLSO94925 669 aaPredicted RBP13.89□□□□□ -0.19
CIITA-204ENST00000570546 TBXA2RP21731 343 aa13.89□□□□□ -0.19
CIITA-204ENST00000570546 RBP2P50120 134 aa13.89□□□□□ -0.19
CIITA-204ENST00000570546 PLXDC2Q6UX71 529 aa13.89□□□□□ -0.19
CIITA-204ENST00000570546 HLA-CQ95604 372 aa13.89□□□□□ -0.19
CIITA-204ENST00000570546 MMP25Q9NPA2 562 aa13.89□□□□□ -0.19
CIITA-204ENST00000570546 ZNF705FA8MVS1 300 aaPredicted RBP13.88□□□□□ -0.19
CIITA-204ENST00000570546 ACTL6BO94805 426 aa13.88□□□□□ -0.19
CIITA-204ENST00000570546 ZNF705DP0CH99 300 aaPredicted RBP13.88□□□□□ -0.19
CIITA-204ENST00000570546 ZNF705BP0CI00 300 aaPredicted RBP13.88□□□□□ -0.19
CIITA-204ENST00000570546 PRSS41Q7RTY9 318 aa13.88□□□□□ -0.19
CIITA-204ENST00000570546 GRAMD2AQ8IUY3 354 aa13.88□□□□□ -0.19
CIITA-204ENST00000570546 SLC38A9Q8NBW4 561 aa13.88□□□□□ -0.19
CIITA-204ENST00000570546 OR13C8Q8NGS7 320 aa13.88□□□□□ -0.19
CIITA-204ENST00000570546 TAAR8Q969N4 342 aa13.88□□□□□ -0.19
CIITA-204ENST00000570546 ZNF764Q96H86 408 aaPredicted RBP13.88□□□□□ -0.19
CIITA-204ENST00000570546 OXGR1Q96P68 337 aa13.88□□□□□ -0.19
CIITA-204ENST00000570546 MARVELD1Q9BSK0 173 aa13.88□□□□□ -0.19
CIITA-204ENST00000570546 GCM1Q9NP62 436 aa13.88□□□□□ -0.19
CIITA-204ENST00000570546 LHX6Q9UPM6 363 aa13.88□□□□□ -0.19
CIITA-204ENST00000570546 MEIKINA0A087WXM9 373 aa13.88□□□□□ -0.19
CIITA-204ENST00000570546 SPTY2D1-AS1A0A0U1RR47 76 aa13.88□□□□□ -0.19
CIITA-204ENST00000570546 GUSBP08236 651 aa13.88□□□□□ -0.19
CIITA-204ENST00000570546 DUSP1P28562 367 aa13.88□□□□□ -0.19
CIITA-204ENST00000570546 HTD2P86397 168 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms