RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 DEFB108BQ8NET1 73 aa13.54□□□□□ -0.24
CLN3-229ENST00000567963 C22orf15Q8WYQ4 148 aa13.54□□□□□ -0.24
CLN3-229ENST00000567963 DVL3Q92997 716 aaPredicted RBP13.54□□□□□ -0.24
CLN3-229ENST00000567963 CMTM5Q96DZ9 223 aa13.54□□□□□ -0.24
CLN3-229ENST00000567963 OR2V2Q96R30 315 aa13.54□□□□□ -0.24
CLN3-229ENST00000567963 GPA33Q99795 319 aa13.54□□□□□ -0.24
CLN3-229ENST00000567963 PLA2G12AQ9BZM1 189 aa13.54□□□□□ -0.24
CLN3-229ENST00000567963 ESM1Q9NQ30 184 aa13.54□□□□□ -0.24
CLN3-229ENST00000567963 SAMD4AQ9UPU9 718 aaKnown RBP13.54□□□□□ -0.24
CLN3-229ENST00000567963 AURKCQ9UQB9 309 aa13.54□□□□□ -0.24
CLN3-229ENST00000567963 UNC119BA6NIH7 251 aa13.53□□□□□ -0.24
CLN3-229ENST00000567963 DCTN6O00399 190 aa13.53□□□□□ -0.24
CLN3-229ENST00000567963 DIRAS1O95057 198 aa13.53□□□□□ -0.24
CLN3-229ENST00000567963 GPANK1O95872 356 aa13.53□□□□□ -0.24
CLN3-229ENST00000567963 CRABP1P29762 137 aa13.53□□□□□ -0.24
CLN3-229ENST00000567963 SEC61A1P61619 476 aaKnown RBP13.53□□□□□ -0.24
CLN3-229ENST00000567963 HIST1H3AP68431 136 aa13.53□□□□□ -0.24
CLN3-229ENST00000567963 HIST2H3PS2Q5TEC6 136 aa13.53□□□□□ -0.24
CLN3-229ENST00000567963 SMARCD3Q6STE5 483 aa13.53□□□□□ -0.24
CLN3-229ENST00000567963 FBXW12Q6X9E4 464 aa13.53□□□□□ -0.24
CLN3-229ENST00000567963 HIST2H3AQ71DI3 136 aa13.53□□□□□ -0.24
CLN3-229ENST00000567963 OR5AS1Q8N127 324 aa13.53□□□□□ -0.24
CLN3-229ENST00000567963 FAM86B1Q8N7N1 296 aa13.53□□□□□ -0.24
CLN3-229ENST00000567963 C3orf56Q8N813 242 aa13.53□□□□□ -0.24
CLN3-229ENST00000567963 GJC3Q8NFK1 279 aa13.53□□□□□ -0.24
CLN3-229ENST00000567963 OR5L1Q8NGL2 311 aa13.53□□□□□ -0.24
CLN3-229ENST00000567963 OR52J3Q8NH60 311 aa13.53□□□□□ -0.24
CLN3-229ENST00000567963 DHRS1Q96LJ7 313 aa13.53□□□□□ -0.24
CLN3-229ENST00000567963 TSSK2Q96PF2 358 aa13.53□□□□□ -0.24
CLN3-229ENST00000567963 FUZQ9BT04 418 aa13.53□□□□□ -0.24
CLN3-229ENST00000567963 MYLK2Q9H1R3 596 aa13.53□□□□□ -0.24
CLN3-229ENST00000567963 NTN4Q9HB63 628 aa13.53□□□□□ -0.24
CLN3-229ENST00000567963 GCM1Q9NP62 436 aa13.53□□□□□ -0.24
CLN3-229ENST00000567963 SPAG4Q9NPE6 437 aa13.53□□□□□ -0.24
CLN3-229ENST00000567963 KRCC1Q9NPI7 259 aaPredicted RBP13.53□□□□□ -0.24
CLN3-229ENST00000567963 TMEM178BH3BS89 294 aa13.52□□□□□ -0.25
CLN3-229ENST00000567963 ZNF154Q13106 437 aa13.52□□□□□ -0.25
CLN3-229ENST00000567963 KRT72Q14CN4 511 aa13.52□□□□□ -0.25
CLN3-229ENST00000567963 MEP1BQ16820 701 aa13.52□□□□□ -0.25
CLN3-229ENST00000567963 OR2T2Q6IF00 324 aa13.52□□□□□ -0.25
CLN3-229ENST00000567963 SLC27A4Q6P1M0 643 aa13.52□□□□□ -0.25
CLN3-229ENST00000567963 ATG16L2Q8NAA4 619 aa13.52□□□□□ -0.25
CLN3-229ENST00000567963 OR8G5Q8NG78 346 aa13.52□□□□□ -0.25
CLN3-229ENST00000567963 POP5Q969H6 163 aaKnown RBP13.52□□□□□ -0.25
CLN3-229ENST00000567963 APOBEC3DQ96AK3 386 aaPredicted RBP13.52□□□□□ -0.25
CLN3-229ENST00000567963 GORASP2Q9H8Y8 452 aa13.52□□□□□ -0.25
CLN3-229ENST00000567963 PTTG3PQ9NZH4 202 aa13.52□□□□□ -0.25
CLN3-229ENST00000567963 POLR1DQ9Y2S0 133 aa13.52□□□□□ -0.25
CLN3-229ENST00000567963 AUP1Q9Y679 476 aa13.52□□□□□ -0.25
CLN3-229ENST00000567963 LHFPL6Q9Y693 200 aa13.52□□□□□ -0.25
CLN3-229ENST00000567963 A8MXK9 166 aa13.51□□□□□ -0.25
CLN3-229ENST00000567963 F5H0A9 414 aaPredicted RBP13.51□□□□□ -0.25
CLN3-229ENST00000567963 MDH2P40926 338 aaKnown RBP13.51□□□□□ -0.25
CLN3-229ENST00000567963 CENPAP49450 140 aa13.51□□□□□ -0.25
CLN3-229ENST00000567963 MMP16P51512 607 aa13.51□□□□□ -0.25
CLN3-229ENST00000567963 RSPO1Q2MKA7 263 aaPredicted RBP13.51□□□□□ -0.25
CLN3-229ENST00000567963 TUSC1Q2TAM9 212 aa13.51□□□□□ -0.25
CLN3-229ENST00000567963 RFX4Q33E94 735 aa13.51□□□□□ -0.25
CLN3-229ENST00000567963 PGM2L1Q6PCE3 622 aa13.51□□□□□ -0.25
CLN3-229ENST00000567963 DNM1P34Q6PK57 102 aa13.51□□□□□ -0.25
CLN3-229ENST00000567963 OR6V1Q8N148 313 aa13.51□□□□□ -0.25
CLN3-229ENST00000567963 RNF148Q8N7C7 305 aa13.51□□□□□ -0.25
CLN3-229ENST00000567963 OR13G1Q8NGZ3 307 aa13.51□□□□□ -0.25
CLN3-229ENST00000567963 ZNF582Q96NG8 517 aaPredicted RBP13.51□□□□□ -0.25
CLN3-229ENST00000567963 ERMAPQ96PL5 475 aaPredicted RBP13.51□□□□□ -0.25
CLN3-229ENST00000567963 COQ7Q99807 217 aa13.51□□□□□ -0.25
CLN3-229ENST00000567963 HDHD2Q9H0R4 259 aa13.51□□□□□ -0.25
CLN3-229ENST00000567963 SRA1Q9HD15 236 aaKnown RBP13.51□□□□□ -0.25
CLN3-229ENST00000567963 ADA2Q9NZK5 511 aa13.51□□□□□ -0.25
CLN3-229ENST00000567963 B9D1Q9UPM9 204 aa13.51□□□□□ -0.25
CLN3-229ENST00000567963 INSIG2Q9Y5U4 225 aa13.51□□□□□ -0.25
CLN3-229ENST00000567963 IGLV1-36A0A0B4J1U3 117 aa13.5□□□□□ -0.25
CLN3-229ENST00000567963 IFNL4K9M1U5 179 aa13.5□□□□□ -0.25
CLN3-229ENST00000567963 GMNNO75496 209 aa13.5□□□□□ -0.25
CLN3-229ENST00000567963 PPP1R3DO95685 299 aa13.5□□□□□ -0.25
CLN3-229ENST00000567963 ZNF12P17014 697 aa13.5□□□□□ -0.25
CLN3-229ENST00000567963 UBA52P62987 128 aaKnown RBP13.5□□□□□ -0.25
CLN3-229ENST00000567963 COX10Q12887 443 aa13.5□□□□□ -0.25
CLN3-229ENST00000567963 ESCO2Q56NI9 601 aa13.5□□□□□ -0.25
CLN3-229ENST00000567963 ARMCX4Q5H9R4 360 aa13.5□□□□□ -0.25
CLN3-229ENST00000567963 CORO6Q6QEF8 472 aa13.5□□□□□ -0.25
CLN3-229ENST00000567963 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.5□□□□□ -0.25
CLN3-229ENST00000567963 MUC20Q8N307 709 aaPredicted RBP13.5□□□□□ -0.25
CLN3-229ENST00000567963 OR10AD1Q8NGE0 317 aa13.5□□□□□ -0.25
CLN3-229ENST00000567963 ZNF420Q8TAQ5 688 aaPredicted RBP13.5□□□□□ -0.25
CLN3-229ENST00000567963 MEGF10Q96KG7 1140 aa13.5□□□□□ -0.25
CLN3-229ENST00000567963 NMNAT3Q96T66 252 aa13.5□□□□□ -0.25
CLN3-229ENST00000567963 ELAC2Q9BQ52 826 aaKnown RBP13.5□□□□□ -0.25
CLN3-229ENST00000567963 OR52D1Q9H346 318 aa13.5□□□□□ -0.25
CLN3-229ENST00000567963 DDX28Q9NUL7 540 aaKnown RBP13.5□□□□□ -0.25
CLN3-229ENST00000567963 NUP50Q9UKX7 468 aa13.5□□□□□ -0.25
CLN3-229ENST00000567963 PPIAL4AQ9Y536 164 aa13.5□□□□□ -0.25
CLN3-229ENST00000567963 H0YL77 283 aa13.49□□□□□ -0.25
CLN3-229ENST00000567963 ARPC3O15145 178 aa13.49□□□□□ -0.25
CLN3-229ENST00000567963 GADD45GO95257 159 aa13.49□□□□□ -0.25
CLN3-229ENST00000567963 SEMG1P04279 462 aa13.49□□□□□ -0.25
CLN3-229ENST00000567963 WNT2P09544 360 aa13.49□□□□□ -0.25
CLN3-229ENST00000567963 PRDX6P30041 224 aa13.49□□□□□ -0.25
CLN3-229ENST00000567963 SMIM11AP58511 58 aa13.49□□□□□ -0.25
CLN3-229ENST00000567963 KLF17Q5JT82 389 aaPredicted RBP13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms