RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 SQSTM1Q13501 440 aa11.88□□□□□ -0.51
VPS4A-204ENST00000566354 ZNF273Q14593 569 aa11.88□□□□□ -0.51
VPS4A-204ENST00000566354 MEP1BQ16820 701 aa11.88□□□□□ -0.51
VPS4A-204ENST00000566354 PRAMEF17Q5VTA0 474 aa11.88□□□□□ -0.51
VPS4A-204ENST00000566354 ZSCAN2Q7Z7L9 614 aaPredicted RBP11.88□□□□□ -0.51
VPS4A-204ENST00000566354 ZNF679Q8IYX0 411 aa11.88□□□□□ -0.51
VPS4A-204ENST00000566354 CARFQ8N187 725 aa11.88□□□□□ -0.51
VPS4A-204ENST00000566354 C12orf45Q8N5I9 185 aaPredicted RBP11.88□□□□□ -0.51
VPS4A-204ENST00000566354 TMEM229BQ8NBD8 167 aa11.88□□□□□ -0.51
VPS4A-204ENST00000566354 OR52H1Q8NGJ2 320 aa11.88□□□□□ -0.51
VPS4A-204ENST00000566354 ZNF563Q8TA94 476 aa11.88□□□□□ -0.51
VPS4A-204ENST00000566354 RHBDD1Q8TEB9 315 aa11.88□□□□□ -0.51
VPS4A-204ENST00000566354 DVL3Q92997 716 aaPredicted RBP11.88□□□□□ -0.51
VPS4A-204ENST00000566354 LRFN3Q9BTN0 628 aa11.88□□□□□ -0.51
VPS4A-204ENST00000566354 ADAM19Q9H013 955 aa11.88□□□□□ -0.51
VPS4A-204ENST00000566354 POFUT1Q9H488 388 aa11.88□□□□□ -0.51
VPS4A-204ENST00000566354 ZNF768Q9H5H4 540 aaKnown RBP11.88□□□□□ -0.51
VPS4A-204ENST00000566354 MYOZ1Q9NP98 299 aaPredicted RBP11.88□□□□□ -0.51
VPS4A-204ENST00000566354 H3BMH7 237 aa11.87□□□□□ -0.51
VPS4A-204ENST00000566354 RAB3DO95716 219 aa11.87□□□□□ -0.51
VPS4A-204ENST00000566354 FBXO45P0C2W1 286 aa11.87□□□□□ -0.51
VPS4A-204ENST00000566354 OR4E1P0C645 316 aa11.87□□□□□ -0.51
VPS4A-204ENST00000566354 MGMTP16455 207 aa11.87□□□□□ -0.51
VPS4A-204ENST00000566354 FGL1Q08830 312 aa11.87□□□□□ -0.51
VPS4A-204ENST00000566354 SERTAD2Q14140 314 aa11.87□□□□□ -0.51
VPS4A-204ENST00000566354 GLT8D1Q68CQ7 371 aa11.87□□□□□ -0.51
VPS4A-204ENST00000566354 TMEM205Q6UW68 189 aa11.87□□□□□ -0.51
VPS4A-204ENST00000566354 LRRC69Q6ZNQ3 347 aa11.87□□□□□ -0.51
VPS4A-204ENST00000566354 METTL27Q8N6F8 245 aaPredicted RBP11.87□□□□□ -0.51
VPS4A-204ENST00000566354 OR1J4Q8NGS1 313 aa11.87□□□□□ -0.51
VPS4A-204ENST00000566354 RNF128Q8TEB7 428 aa11.87□□□□□ -0.51
VPS4A-204ENST00000566354 DUSP19Q8WTR2 217 aa11.87□□□□□ -0.51
VPS4A-204ENST00000566354 SEH1LQ96EE3 360 aa11.87□□□□□ -0.51
VPS4A-204ENST00000566354 DMRTA2Q96SC8 542 aa11.87□□□□□ -0.51
VPS4A-204ENST00000566354 SLCO5A1Q9H2Y9 848 aa11.87□□□□□ -0.51
VPS4A-204ENST00000566354 COA4Q9NYJ1 87 aa11.87□□□□□ -0.51
VPS4A-204ENST00000566354 CKLFQ9UBR5 152 aa11.87□□□□□ -0.51
VPS4A-204ENST00000566354 RIF1Q5UIP0 2472 aaKnown RBP11.87□□□□□ -0.51
VPS4A-204ENST00000566354 A0A0D9SG52 128 aa11.87□□□□□ -0.51
VPS4A-204ENST00000566354 IGHV5-10-1A0A0J9YXX1 117 aa11.87□□□□□ -0.51
VPS4A-204ENST00000566354 LOC390937A0A1W2PQ73 354 aa11.87□□□□□ -0.51
VPS4A-204ENST00000566354 TCRBV16S1A1N1A0A5B0 115 aa11.87□□□□□ -0.51
VPS4A-204ENST00000566354 TMEM82A0PJX8 343 aa11.87□□□□□ -0.51
VPS4A-204ENST00000566354 SPDEFO95238 335 aa11.87□□□□□ -0.51
VPS4A-204ENST00000566354 UTS2O95399 124 aa11.87□□□□□ -0.51
VPS4A-204ENST00000566354 GPANK1O95872 356 aa11.87□□□□□ -0.51
VPS4A-204ENST00000566354 HLA-DQA2P01906 255 aa11.87□□□□□ -0.51
VPS4A-204ENST00000566354 PPICP45877 212 aa11.87□□□□□ -0.51
VPS4A-204ENST00000566354 MEOX2P50222 304 aa11.87□□□□□ -0.51
VPS4A-204ENST00000566354 RAB13P51153 203 aa11.87□□□□□ -0.51
VPS4A-204ENST00000566354 ZNF546Q86UE3 836 aa11.87□□□□□ -0.51
VPS4A-204ENST00000566354 STPG2Q8N412 459 aa11.87□□□□□ -0.51
VPS4A-204ENST00000566354 OR1L3Q8NH93 324 aa11.87□□□□□ -0.51
VPS4A-204ENST00000566354 ZNF524Q96C55 264 aa11.87□□□□□ -0.51
VPS4A-204ENST00000566354 DNTTIP1Q9H147 329 aa11.87□□□□□ -0.51
VPS4A-204ENST00000566354 FAM86C1Q9NVL1 165 aa11.87□□□□□ -0.51
VPS4A-204ENST00000566354 C17orf105B2RV13 164 aa11.86□□□□□ -0.51
VPS4A-204ENST00000566354 PRKNO60260 465 aaPredicted RBP11.86□□□□□ -0.51
VPS4A-204ENST00000566354 RLN2P04090 185 aa11.86□□□□□ -0.51
VPS4A-204ENST00000566354 CD2P06729 351 aa11.86□□□□□ -0.51
VPS4A-204ENST00000566354 UBBP0CG47 229 aa11.86□□□□□ -0.51
VPS4A-204ENST00000566354 UBCP0CG48 685 aaKnown RBP11.86□□□□□ -0.51
VPS4A-204ENST00000566354 RAC2P15153 192 aa11.86□□□□□ -0.51
VPS4A-204ENST00000566354 SLC6A8P48029 635 aa11.86□□□□□ -0.51
VPS4A-204ENST00000566354 DUSP3P51452 185 aaPredicted RBP11.86□□□□□ -0.51
VPS4A-204ENST00000566354 RPS27AP62979 156 aaKnown RBP11.86□□□□□ -0.51
VPS4A-204ENST00000566354 UBA52P62987 128 aaKnown RBP11.86□□□□□ -0.51
VPS4A-204ENST00000566354 ROM1Q03395 351 aa11.86□□□□□ -0.51
VPS4A-204ENST00000566354 BIKQ13323 160 aa11.86□□□□□ -0.51
VPS4A-204ENST00000566354 TMEM225Q6GV28 225 aa11.86□□□□□ -0.51
VPS4A-204ENST00000566354 SLC18B1Q6NT16 456 aa11.86□□□□□ -0.51
VPS4A-204ENST00000566354 SLC25A28Q96A46 364 aa11.86□□□□□ -0.51
VPS4A-204ENST00000566354 EDEM2Q9BV94 578 aa11.86□□□□□ -0.51
VPS4A-204ENST00000566354 MS4A7Q9GZW8 240 aaPredicted RBP11.86□□□□□ -0.51
VPS4A-204ENST00000566354 LAT2Q9GZY6 243 aa11.86□□□□□ -0.51
VPS4A-204ENST00000566354 KCNK15Q9H427 330 aa11.86□□□□□ -0.51
VPS4A-204ENST00000566354 FGF21Q9NSA1 209 aa11.86□□□□□ -0.51
VPS4A-204ENST00000566354 ZNF107Q9UII5 783 aaPredicted RBP11.86□□□□□ -0.51
VPS4A-204ENST00000566354 GPR160Q9UJ42 338 aa11.86□□□□□ -0.51
VPS4A-204ENST00000566354 FBXL2Q9UKC9 423 aa11.86□□□□□ -0.51
VPS4A-204ENST00000566354 B9D1Q9UPM9 204 aa11.86□□□□□ -0.51
VPS4A-204ENST00000566354 DHDHQ9UQ10 334 aa11.86□□□□□ -0.51
VPS4A-204ENST00000566354 TMEM184BQ9Y519 407 aaPredicted RBP11.86□□□□□ -0.51
VPS4A-204ENST00000566354 HRH3Q9Y5N1 445 aa11.86□□□□□ -0.51
VPS4A-204ENST00000566354 FER1L5A0AVI2 2057 aa11.86□□□□□ -0.51
VPS4A-204ENST00000566354 ZFHX2Q9C0A1 2572 aaPredicted RBP11.86□□□□□ -0.51
VPS4A-204ENST00000566354 CD8AP01732 235 aa11.86□□□□□ -0.51
VPS4A-204ENST00000566354 FCER2P06734 321 aa11.86□□□□□ -0.51
VPS4A-204ENST00000566354 CD59P13987 128 aa11.86□□□□□ -0.51
VPS4A-204ENST00000566354 CXCR1P25024 350 aa11.86□□□□□ -0.51
VPS4A-204ENST00000566354 HTR2CP28335 458 aa11.86□□□□□ -0.51
VPS4A-204ENST00000566354 MELKQ14680 651 aa11.86□□□□□ -0.51
VPS4A-204ENST00000566354 LY6G6FQ5SQ64 297 aa11.86□□□□□ -0.51
VPS4A-204ENST00000566354 KCTD18Q6PI47 426 aaPredicted RBP11.86□□□□□ -0.51
VPS4A-204ENST00000566354 SLC35D2Q76EJ3 337 aa11.86□□□□□ -0.51
VPS4A-204ENST00000566354 KMT5CQ86Y97 462 aa11.86□□□□□ -0.51
VPS4A-204ENST00000566354 PLPP7Q8NBV4 271 aa11.86□□□□□ -0.51
VPS4A-204ENST00000566354 PXT1Q8NFP0 134 aa11.86□□□□□ -0.51
VPS4A-204ENST00000566354 METTL21AQ8WXB1 218 aa11.86□□□□□ -0.51
VPS4A-204ENST00000566354 MMABQ96EY8 250 aaPredicted RBP11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms