RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 CMTM5Q96DZ9 223 aa15.77■□□□□ 0.12
CLN3-218ENST00000565688 SIGLEC11Q96RL6 698 aa15.77■□□□□ 0.12
CLN3-218ENST00000565688 NUAK2Q9H093 628 aa15.77■□□□□ 0.12
CLN3-218ENST00000565688 HDHD2Q9H0R4 259 aa15.77■□□□□ 0.12
CLN3-218ENST00000565688 DDX28Q9NUL7 540 aaKnown RBP15.77■□□□□ 0.12
CLN3-218ENST00000565688 AUP1Q9Y679 476 aa15.77■□□□□ 0.12
CLN3-218ENST00000565688 A8MXK9 166 aa15.76■□□□□ 0.11
CLN3-218ENST00000565688 RER1O15258 196 aa15.76■□□□□ 0.11
CLN3-218ENST00000565688 PSME3P61289 254 aa15.76■□□□□ 0.11
CLN3-218ENST00000565688 ZNF154Q13106 437 aa15.76■□□□□ 0.11
CLN3-218ENST00000565688 ESCO2Q56NI9 601 aa15.76■□□□□ 0.11
CLN3-218ENST00000565688 SMARCD3Q6STE5 483 aa15.76■□□□□ 0.11
CLN3-218ENST00000565688 PTCHD4Q6ZW05 846 aa15.76■□□□□ 0.11
CLN3-218ENST00000565688 ZDHHC22Q8N966 263 aa15.76■□□□□ 0.11
CLN3-218ENST00000565688 ATG16L2Q8NAA4 619 aa15.76■□□□□ 0.11
CLN3-218ENST00000565688 OR8G5Q8NG78 346 aa15.76■□□□□ 0.11
CLN3-218ENST00000565688 OR13G1Q8NGZ3 307 aa15.76■□□□□ 0.11
CLN3-218ENST00000565688 SGMS2Q8NHU3 365 aa15.76■□□□□ 0.11
CLN3-218ENST00000565688 C7orf34Q96L11 122 aa15.76■□□□□ 0.11
CLN3-218ENST00000565688 ZNF582Q96NG8 517 aaPredicted RBP15.76■□□□□ 0.11
CLN3-218ENST00000565688 COQ7Q99807 217 aa15.76■□□□□ 0.11
CLN3-218ENST00000565688 MRI1Q9BV20 369 aa15.76■□□□□ 0.11
CLN3-218ENST00000565688 GCM1Q9NP62 436 aa15.76■□□□□ 0.11
CLN3-218ENST00000565688 SPAG4Q9NPE6 437 aa15.76■□□□□ 0.11
CLN3-218ENST00000565688 ESM1Q9NQ30 184 aa15.76■□□□□ 0.11
CLN3-218ENST00000565688 MMP26Q9NRE1 261 aa15.76■□□□□ 0.11
CLN3-218ENST00000565688 DCAF13Q9NV06 445 aaKnown RBP15.76■□□□□ 0.11
CLN3-218ENST00000565688 ZNF446Q9NWS9 450 aa15.76■□□□□ 0.11
CLN3-218ENST00000565688 IL20RAQ9UHF4 553 aa15.76■□□□□ 0.11
CLN3-218ENST00000565688 NUP50Q9UKX7 468 aa15.76■□□□□ 0.11
CLN3-218ENST00000565688 TRBV4-1A0A0J9YWV2 114 aa15.75■□□□□ 0.11
CLN3-218ENST00000565688 F5H0A9 414 aaPredicted RBP15.75■□□□□ 0.11
CLN3-218ENST00000565688 TMEM178BH3BS89 294 aa15.75■□□□□ 0.11
CLN3-218ENST00000565688 DBHP09172 617 aa15.75■□□□□ 0.11
CLN3-218ENST00000565688 ZNF12P17014 697 aa15.75■□□□□ 0.11
CLN3-218ENST00000565688 MDH1P40925 334 aaKnown RBP15.75■□□□□ 0.11
CLN3-218ENST00000565688 CDKN2AP42771 156 aaKnown RBP15.75■□□□□ 0.11
CLN3-218ENST00000565688 CENPAP49450 140 aa15.75■□□□□ 0.11
CLN3-218ENST00000565688 SRP9P49458 86 aaKnown RBP15.75■□□□□ 0.11
CLN3-218ENST00000565688 SMIM11AP58511 58 aa15.75■□□□□ 0.11
CLN3-218ENST00000565688 FXYD6P3P58550 94 aa15.75■□□□□ 0.11
CLN3-218ENST00000565688 UBA52P62987 128 aaKnown RBP15.75■□□□□ 0.11
CLN3-218ENST00000565688 HIST1H3AP68431 136 aa15.75■□□□□ 0.11
CLN3-218ENST00000565688 HLXQ14774 488 aaPredicted RBP15.75■□□□□ 0.11
CLN3-218ENST00000565688 SEC23BQ15437 767 aa15.75■□□□□ 0.11
CLN3-218ENST00000565688 HIST2H3PS2Q5TEC6 136 aa15.75■□□□□ 0.11
CLN3-218ENST00000565688 OTPQ5XKR4 325 aa15.75■□□□□ 0.11
CLN3-218ENST00000565688 GLYATQ6IB77 296 aa15.75■□□□□ 0.11
CLN3-218ENST00000565688 HIST2H3AQ71DI3 136 aa15.75■□□□□ 0.11
CLN3-218ENST00000565688 OR5AS1Q8N127 324 aa15.75■□□□□ 0.11
CLN3-218ENST00000565688 C22orf15Q8WYQ4 148 aa15.75■□□□□ 0.11
CLN3-218ENST00000565688 DHRS1Q96LJ7 313 aa15.75■□□□□ 0.11
CLN3-218ENST00000565688 GPA33Q99795 319 aa15.75■□□□□ 0.11
CLN3-218ENST00000565688 MED4Q9NPJ6 270 aa15.75■□□□□ 0.11
CLN3-218ENST00000565688 PTTG3PQ9NZH4 202 aa15.75■□□□□ 0.11
CLN3-218ENST00000565688 OR5V1Q9UGF6 321 aa15.75■□□□□ 0.11
CLN3-218ENST00000565688 LRCH1Q9Y2L9 728 aa15.75■□□□□ 0.11
CLN3-218ENST00000565688 INSIG2Q9Y5U4 225 aa15.75■□□□□ 0.11
CLN3-218ENST00000565688 ARHGAP32A7KAX9 2087 aa15.75■□□□□ 0.11
CLN3-218ENST00000565688 TRAPPC2LH3BP13 241 aa15.74■□□□□ 0.11
CLN3-218ENST00000565688 IMPA2O14732 288 aa15.74■□□□□ 0.11
CLN3-218ENST00000565688 ERFP50548 548 aa15.74■□□□□ 0.11
CLN3-218ENST00000565688 MMP16P51512 607 aa15.74■□□□□ 0.11
CLN3-218ENST00000565688 HNRNPA0Q13151 305 aaKnown RBP15.74■□□□□ 0.11
CLN3-218ENST00000565688 OR2T2Q6IF00 324 aa15.74■□□□□ 0.11
CLN3-218ENST00000565688 OR52J3Q8NH60 311 aa15.74■□□□□ 0.11
CLN3-218ENST00000565688 ERMAPQ96PL5 475 aaPredicted RBP15.74■□□□□ 0.11
CLN3-218ENST00000565688 ZMAT3Q9HA38 289 aaKnown RBP15.74■□□□□ 0.11
CLN3-218ENST00000565688 LHFPL6Q9Y693 200 aa15.74■□□□□ 0.11
CLN3-218ENST00000565688 MGAM2Q2M2H8 2515 aa15.73■□□□□ 0.11
CLN3-218ENST00000565688 LRRC30A6NM36 301 aa15.73■□□□□ 0.11
CLN3-218ENST00000565688 SELEP16581 610 aa15.73■□□□□ 0.11
CLN3-218ENST00000565688 PRDX6P30041 224 aa15.73■□□□□ 0.11
CLN3-218ENST00000565688 SEC61A1P61619 476 aaKnown RBP15.73■□□□□ 0.11
CLN3-218ENST00000565688 COX10Q12887 443 aa15.73■□□□□ 0.11
CLN3-218ENST00000565688 TUSC1Q2TAM9 212 aa15.73■□□□□ 0.11
CLN3-218ENST00000565688 DOK3Q7L591 496 aa15.73■□□□□ 0.11
CLN3-218ENST00000565688 JAZF1Q86VZ6 243 aa15.73■□□□□ 0.11
CLN3-218ENST00000565688 OR10AD1Q8NGE0 317 aa15.73■□□□□ 0.11
CLN3-218ENST00000565688 FANK1Q8TC84 345 aa15.73■□□□□ 0.11
CLN3-218ENST00000565688 MEGF10Q96KG7 1140 aa15.73■□□□□ 0.11
CLN3-218ENST00000565688 FUZQ9BT04 418 aa15.73■□□□□ 0.11
CLN3-218ENST00000565688 HCAR1Q9BXC0 346 aa15.73■□□□□ 0.11
CLN3-218ENST00000565688 GORASP2Q9H8Y8 452 aa15.73■□□□□ 0.11
CLN3-218ENST00000565688 PKD1L1Q8TDX9 2849 aa15.72■□□□□ 0.11
CLN3-218ENST00000565688 IGLV1-36A0A0B4J1U3 117 aa15.72■□□□□ 0.11
CLN3-218ENST00000565688 CEACAM18A8MTB9 384 aa15.72■□□□□ 0.11
CLN3-218ENST00000565688 IQCF6A8MYZ5 107 aa15.72■□□□□ 0.11
CLN3-218ENST00000565688 DCTN6O00399 190 aa15.72■□□□□ 0.11
CLN3-218ENST00000565688 ARPC3O15145 178 aa15.72■□□□□ 0.11
CLN3-218ENST00000565688 SPRY1O43609 319 aaPredicted RBP15.72■□□□□ 0.11
CLN3-218ENST00000565688 DIRAS1O95057 198 aa15.72■□□□□ 0.11
CLN3-218ENST00000565688 FSTL3O95633 263 aa15.72■□□□□ 0.11
CLN3-218ENST00000565688 PPP1R3DO95685 299 aa15.72■□□□□ 0.11
CLN3-218ENST00000565688 RENP00797 406 aa15.72■□□□□ 0.11
CLN3-218ENST00000565688 SLC6A6P31641 620 aa15.72■□□□□ 0.11
CLN3-218ENST00000565688 ECH1Q13011 328 aa15.72■□□□□ 0.11
CLN3-218ENST00000565688 MEP1BQ16820 701 aa15.72■□□□□ 0.11
CLN3-218ENST00000565688 ZNF181Q2M3W8 571 aa15.72■□□□□ 0.11
CLN3-218ENST00000565688 RFX4Q33E94 735 aa15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms