RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 SEC61A1P61619 476 aaKnown RBP14.39□□□□□ -0.11
CLN3-216ENST00000565316 OTPQ5XKR4 325 aa14.39□□□□□ -0.11
CLN3-216ENST00000565316 DPY19L2P2Q6ZN68 376 aa14.39□□□□□ -0.11
CLN3-216ENST00000565316 PTCHD4Q6ZW05 846 aa14.39□□□□□ -0.11
CLN3-216ENST00000565316 SIGLECL1Q8N7X8 197 aa14.39□□□□□ -0.11
CLN3-216ENST00000565316 FAM162AQ96A26 154 aa14.39□□□□□ -0.11
CLN3-216ENST00000565316 RSRC1Q96IZ7 334 aaKnown RBP14.39□□□□□ -0.11
CLN3-216ENST00000565316 C7orf34Q96L11 122 aa14.39□□□□□ -0.11
CLN3-216ENST00000565316 FUZQ9BT04 418 aa14.39□□□□□ -0.11
CLN3-216ENST00000565316 NUAK2Q9H093 628 aa14.39□□□□□ -0.11
CLN3-216ENST00000565316 DDX28Q9NUL7 540 aaKnown RBP14.39□□□□□ -0.11
CLN3-216ENST00000565316 ABCD2Q9UBJ2 740 aa14.39□□□□□ -0.11
CLN3-216ENST00000565316 RPS6KA6Q9UK32 745 aa14.39□□□□□ -0.11
CLN3-216ENST00000565316 AUP1Q9Y679 476 aa14.39□□□□□ -0.11
CLN3-216ENST00000565316 A0A1B0GWJ7 208 aa14.38□□□□□ -0.11
CLN3-216ENST00000565316 CCDC22O60826 627 aa14.38□□□□□ -0.11
CLN3-216ENST00000565316 DBHP09172 617 aa14.38□□□□□ -0.11
CLN3-216ENST00000565316 NCK1P16333 377 aa14.38□□□□□ -0.11
CLN3-216ENST00000565316 RHCEP18577 417 aa14.38□□□□□ -0.11
CLN3-216ENST00000565316 CDKN2AP42771 156 aaKnown RBP14.38□□□□□ -0.11
CLN3-216ENST00000565316 MMP16P51512 607 aa14.38□□□□□ -0.11
CLN3-216ENST00000565316 PAX8Q06710 450 aa14.38□□□□□ -0.11
CLN3-216ENST00000565316 HLXQ14774 488 aaPredicted RBP14.38□□□□□ -0.11
CLN3-216ENST00000565316 SEC23BQ15437 767 aa14.38□□□□□ -0.11
CLN3-216ENST00000565316 SLC27A4Q6P1M0 643 aa14.38□□□□□ -0.11
CLN3-216ENST00000565316 C1orf94Q6P1W5 598 aa14.38□□□□□ -0.11
CLN3-216ENST00000565316 MUC20Q8N307 709 aaPredicted RBP14.38□□□□□ -0.11
CLN3-216ENST00000565316 OR8G5Q8NG78 346 aa14.38□□□□□ -0.11
CLN3-216ENST00000565316 OR5L1Q8NGL2 311 aa14.38□□□□□ -0.11
CLN3-216ENST00000565316 APOBEC3DQ96AK3 386 aaPredicted RBP14.38□□□□□ -0.11
CLN3-216ENST00000565316 DHRS1Q96LJ7 313 aa14.38□□□□□ -0.11
CLN3-216ENST00000565316 COQ7Q99807 217 aa14.38□□□□□ -0.11
CLN3-216ENST00000565316 KCTD14Q9BQ13 255 aaPredicted RBP14.38□□□□□ -0.11
CLN3-216ENST00000565316 ZNF69Q9UC07 566 aa14.38□□□□□ -0.11
CLN3-216ENST00000565316 IL20RAQ9UHF4 553 aa14.38□□□□□ -0.11
CLN3-216ENST00000565316 IER3IP1Q9Y5U9 82 aa14.38□□□□□ -0.11
CLN3-216ENST00000565316 TRBV4-1A0A0J9YWV2 114 aa14.37□□□□□ -0.11
CLN3-216ENST00000565316 CEACAM18A8MTB9 384 aa14.37□□□□□ -0.11
CLN3-216ENST00000565316 SOCS2O14508 198 aa14.37□□□□□ -0.11
CLN3-216ENST00000565316 FSTL3O95633 263 aa14.37□□□□□ -0.11
CLN3-216ENST00000565316 WNT2P09544 360 aa14.37□□□□□ -0.11
CLN3-216ENST00000565316 HKR1P10072 659 aa14.37□□□□□ -0.11
CLN3-216ENST00000565316 PAX2Q02962 417 aa14.37□□□□□ -0.11
CLN3-216ENST00000565316 RSPO1Q2MKA7 263 aaPredicted RBP14.37□□□□□ -0.11
CLN3-216ENST00000565316 ESCO2Q56NI9 601 aa14.37□□□□□ -0.11
CLN3-216ENST00000565316 ARMCX4Q5H9R4 360 aa14.37□□□□□ -0.11
CLN3-216ENST00000565316 OR2T2Q6IF00 324 aa14.37□□□□□ -0.11
CLN3-216ENST00000565316 PGM2L1Q6PCE3 622 aa14.37□□□□□ -0.11
CLN3-216ENST00000565316 RBMS3Q6XE24 437 aaKnown RBP14.37□□□□□ -0.11
CLN3-216ENST00000565316 ATG16L2Q8NAA4 619 aa14.37□□□□□ -0.11
CLN3-216ENST00000565316 GJC3Q8NFK1 279 aa14.37□□□□□ -0.11
CLN3-216ENST00000565316 OR13G1Q8NGZ3 307 aa14.37□□□□□ -0.11
CLN3-216ENST00000565316 MEGF10Q96KG7 1140 aa14.37□□□□□ -0.11
CLN3-216ENST00000565316 GPA33Q99795 319 aa14.37□□□□□ -0.11
CLN3-216ENST00000565316 HDHD2Q9H0R4 259 aa14.37□□□□□ -0.11
CLN3-216ENST00000565316 RERGLQ9H628 205 aa14.37□□□□□ -0.11
CLN3-216ENST00000565316 TMEM165Q9HC07 324 aa14.37□□□□□ -0.11
CLN3-216ENST00000565316 DCAF13Q9NV06 445 aaKnown RBP14.37□□□□□ -0.11
CLN3-216ENST00000565316 ZNF446Q9NWS9 450 aa14.37□□□□□ -0.11
CLN3-216ENST00000565316 PTTG3PQ9NZH4 202 aa14.37□□□□□ -0.11
CLN3-216ENST00000565316 LRCH1Q9Y2L9 728 aa14.37□□□□□ -0.11
CLN3-216ENST00000565316 FAM32AQ9Y421 112 aaKnown RBP14.37□□□□□ -0.11
CLN3-216ENST00000565316 PPIAL4AQ9Y536 164 aa14.37□□□□□ -0.11
CLN3-216ENST00000565316 LHFPL6Q9Y693 200 aa14.37□□□□□ -0.11
CLN3-216ENST00000565316 IGLV1-36A0A0B4J1U3 117 aa14.36□□□□□ -0.11
CLN3-216ENST00000565316 UNC119BA6NIH7 251 aa14.36□□□□□ -0.11
CLN3-216ENST00000565316 DCTN6O00399 190 aa14.36□□□□□ -0.11
CLN3-216ENST00000565316 PPIAL4GP0DN37 164 aa14.36□□□□□ -0.11
CLN3-216ENST00000565316 PRTN3P24158 256 aa14.36□□□□□ -0.11
CLN3-216ENST00000565316 COX10Q12887 443 aa14.36□□□□□ -0.11
CLN3-216ENST00000565316 ZNF181Q2M3W8 571 aa14.36□□□□□ -0.11
CLN3-216ENST00000565316 KRTAP27-1Q3LI81 207 aa14.36□□□□□ -0.11
CLN3-216ENST00000565316 FGD3Q5JSP0 725 aa14.36□□□□□ -0.11
CLN3-216ENST00000565316 COLCA1Q6ZS62 124 aa14.36□□□□□ -0.11
CLN3-216ENST00000565316 OR5AS1Q8N127 324 aa14.36□□□□□ -0.11
CLN3-216ENST00000565316 C1orf147Q96MC9 270 aaPredicted RBP14.36□□□□□ -0.11
CLN3-216ENST00000565316 TSSK2Q96PF2 358 aa14.36□□□□□ -0.11
CLN3-216ENST00000565316 SLC30A2Q9BRI3 323 aa14.36□□□□□ -0.11
CLN3-216ENST00000565316 MRI1Q9BV20 369 aa14.36□□□□□ -0.11
CLN3-216ENST00000565316 ZNF747Q9BV97 191 aa14.36□□□□□ -0.11
CLN3-216ENST00000565316 ZMAT3Q9HA38 289 aaKnown RBP14.36□□□□□ -0.11
CLN3-216ENST00000565316 MLNRO43193 412 aa14.35□□□□□ -0.11
CLN3-216ENST00000565316 GPANK1O95872 356 aa14.35□□□□□ -0.11
CLN3-216ENST00000565316 CRABP1P29762 137 aa14.35□□□□□ -0.11
CLN3-216ENST00000565316 CD80P33681 288 aa14.35□□□□□ -0.11
CLN3-216ENST00000565316 SRP9P49458 86 aaKnown RBP14.35□□□□□ -0.11
CLN3-216ENST00000565316 NUDT2P50583 147 aa14.35□□□□□ -0.11
CLN3-216ENST00000565316 RPS6KA3P51812 740 aa14.35□□□□□ -0.11
CLN3-216ENST00000565316 PSME3P61289 254 aa14.35□□□□□ -0.11
CLN3-216ENST00000565316 FOXL1Q12952 345 aa14.35□□□□□ -0.11
CLN3-216ENST00000565316 DNM1P34Q6PK57 102 aa14.35□□□□□ -0.11
CLN3-216ENST00000565316 SMARCD3Q6STE5 483 aa14.35□□□□□ -0.11
CLN3-216ENST00000565316 BCL6BQ8N143 479 aaPredicted RBP14.35□□□□□ -0.11
CLN3-216ENST00000565316 OR10AD1Q8NGE0 317 aa14.35□□□□□ -0.11
CLN3-216ENST00000565316 DACT3Q96B18 629 aaPredicted RBP14.35□□□□□ -0.11
CLN3-216ENST00000565316 ZNF48Q96MX3 618 aaPredicted RBP14.35□□□□□ -0.11
CLN3-216ENST00000565316 ZNF582Q96NG8 517 aaPredicted RBP14.35□□□□□ -0.11
CLN3-216ENST00000565316 OR5V1Q9UGF6 321 aa14.35□□□□□ -0.11
CLN3-216ENST00000565316 B9D1Q9UPM9 204 aa14.35□□□□□ -0.11
CLN3-216ENST00000565316 AURKCQ9UQB9 309 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms