RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 ITPR1Q14643 2758 aa9.85□□□□□ -0.83
USP3-218ENST00000560202 RER1O15258 196 aa9.85□□□□□ -0.83
USP3-218ENST00000560202 PLPP2O43688 288 aa9.85□□□□□ -0.83
USP3-218ENST00000560202 IL2RAP01589 272 aa9.85□□□□□ -0.83
USP3-218ENST00000560202 CRHP06850 196 aa9.85□□□□□ -0.83
USP3-218ENST00000560202 H2BFMP0C1H6 154 aa9.85□□□□□ -0.83
USP3-218ENST00000560202 GABRA5P31644 462 aa9.85□□□□□ -0.83
USP3-218ENST00000560202 TIMP3P35625 211 aa9.85□□□□□ -0.83
USP3-218ENST00000560202 RIDAP52758 137 aaKnown RBP9.85□□□□□ -0.83
USP3-218ENST00000560202 LSM3P62310 102 aaKnown RBP9.85□□□□□ -0.83
USP3-218ENST00000560202 RPS25P62851 125 aaKnown RBP9.85□□□□□ -0.83
USP3-218ENST00000560202 HIST1H3AP68431 136 aa9.85□□□□□ -0.83
USP3-218ENST00000560202 RBPJQ06330 500 aa9.85□□□□□ -0.83
USP3-218ENST00000560202 SLC3A1Q07837 685 aa9.85□□□□□ -0.83
USP3-218ENST00000560202 CDK5R1Q15078 307 aa9.85□□□□□ -0.83
USP3-218ENST00000560202 TIMM50Q3ZCQ8 353 aa9.85□□□□□ -0.83
USP3-218ENST00000560202 HIST2H3PS2Q5TEC6 136 aa9.85□□□□□ -0.83
USP3-218ENST00000560202 C9orf135Q5VTT2 229 aa9.85□□□□□ -0.83
USP3-218ENST00000560202 DMKNQ6E0U4 476 aaPredicted RBP9.85□□□□□ -0.83
USP3-218ENST00000560202 OR7E24Q6IFN5 339 aa9.85□□□□□ -0.83
USP3-218ENST00000560202 VWA1Q6PCB0 445 aa9.85□□□□□ -0.83
USP3-218ENST00000560202 ARL9Q6T311 187 aa9.85□□□□□ -0.83
USP3-218ENST00000560202 KLHL24Q6TFL4 600 aa9.85□□□□□ -0.83
USP3-218ENST00000560202 C3P1Q6ZMU1 363 aa9.85□□□□□ -0.83
USP3-218ENST00000560202 HIST2H3AQ71DI3 136 aa9.85□□□□□ -0.83
USP3-218ENST00000560202 RHOUQ7L0Q8 258 aa9.85□□□□□ -0.83
USP3-218ENST00000560202 ZNF627Q7L945 461 aa9.85□□□□□ -0.83
USP3-218ENST00000560202 LYSMD2Q8IV50 215 aa9.85□□□□□ -0.83
USP3-218ENST00000560202 ASCC1Q8N9N2 400 aaKnown RBP9.85□□□□□ -0.83
USP3-218ENST00000560202 GJC3Q8NFK1 279 aa9.85□□□□□ -0.83
USP3-218ENST00000560202 OR10S1Q8NGN2 331 aa9.85□□□□□ -0.83
USP3-218ENST00000560202 TMEM203Q969S6 136 aa9.85□□□□□ -0.83
USP3-218ENST00000560202 FBXO17Q96EF6 278 aa9.85□□□□□ -0.83
USP3-218ENST00000560202 ARPC5LQ9BPX5 153 aa9.85□□□□□ -0.83
USP3-218ENST00000560202 CHCHD6Q9BRQ6 235 aa9.85□□□□□ -0.83
USP3-218ENST00000560202 ZNF221Q9UK13 617 aa9.85□□□□□ -0.83
USP3-218ENST00000560202 STUB1Q9UNE7 303 aa9.85□□□□□ -0.83
USP3-218ENST00000560202 LRP12Q9Y561 859 aa9.85□□□□□ -0.83
USP3-218ENST00000560202 TRBV2A0A0J9YWF9 115 aa9.84□□□□□ -0.83
USP3-218ENST00000560202 ZNF878C9JN71 531 aa9.84□□□□□ -0.83
USP3-218ENST00000560202 GPX5O75715 221 aa9.84□□□□□ -0.83
USP3-218ENST00000560202 TNFSF13O75888 250 aa9.84□□□□□ -0.83
USP3-218ENST00000560202 FARS2O95363 451 aaKnown RBP9.84□□□□□ -0.83
USP3-218ENST00000560202 TMIGD3P0DMS9 266 aaPredicted RBP9.84□□□□□ -0.83
USP3-218ENST00000560202 CD53P19397 219 aa9.84□□□□□ -0.83
USP3-218ENST00000560202 MPGP29372 298 aa9.84□□□□□ -0.83
USP3-218ENST00000560202 CRYBB2P43320 205 aa9.84□□□□□ -0.83
USP3-218ENST00000560202 NANOS3P60323 173 aaKnown RBP9.84□□□□□ -0.83
USP3-218ENST00000560202 EIF2S3LQ2VIR3 472 aaKnown RBP9.84□□□□□ -0.83
USP3-218ENST00000560202 AGAP6Q5VW22 663 aa9.84□□□□□ -0.83
USP3-218ENST00000560202 SLC16A14Q7RTX9 510 aa9.84□□□□□ -0.83
USP3-218ENST00000560202 BTLAQ7Z6A9 289 aa9.84□□□□□ -0.83
USP3-218ENST00000560202 HIST2H2ABQ8IUE6 130 aaPredicted RBP9.84□□□□□ -0.83
USP3-218ENST00000560202 SKA3Q8IX90 412 aa9.84□□□□□ -0.83
USP3-218ENST00000560202 SETD6Q8TBK2 473 aa9.84□□□□□ -0.83
USP3-218ENST00000560202 RPS4Y2Q8TD47 263 aa9.84□□□□□ -0.83
USP3-218ENST00000560202 HSD17B8Q92506 261 aa9.84□□□□□ -0.83
USP3-218ENST00000560202 GHSRQ92847 366 aa9.84□□□□□ -0.83
USP3-218ENST00000560202 SMIM19Q96E16 107 aa9.84□□□□□ -0.83
USP3-218ENST00000560202 PGLYRP3Q96LB9 341 aa9.84□□□□□ -0.83
USP3-218ENST00000560202 ZFP3Q96NJ6 502 aa9.84□□□□□ -0.83
USP3-218ENST00000560202 TMED9Q9BVK6 235 aa9.84□□□□□ -0.83
USP3-218ENST00000560202 PNRC2Q9NPJ4 139 aaKnown RBP9.84□□□□□ -0.83
USP3-218ENST00000560202 PLSCR4Q9NRQ2 329 aa9.84□□□□□ -0.83
USP3-218ENST00000560202 LOC100506127A0A0U1RQW1 187 aa9.83□□□□□ -0.84
USP3-218ENST00000560202 CNOT4O95628 575 aaKnown RBP9.83□□□□□ -0.84
USP3-218ENST00000560202 CD1AP06126 327 aa9.83□□□□□ -0.84
USP3-218ENST00000560202 ITGA5P08648 1049 aa9.83□□□□□ -0.84
USP3-218ENST00000560202 GLI4P10075 376 aa9.83□□□□□ -0.84
USP3-218ENST00000560202 CEACAM8P31997 349 aaPredicted RBP9.83□□□□□ -0.84
USP3-218ENST00000560202 DCTDP32321 178 aa9.83□□□□□ -0.84
USP3-218ENST00000560202 GDI2P50395 445 aaKnown RBP9.83□□□□□ -0.84
USP3-218ENST00000560202 VBP1P61758 197 aa9.83□□□□□ -0.84
USP3-218ENST00000560202 NCS1P62166 190 aa9.83□□□□□ -0.84
USP3-218ENST00000560202 ALKBH1Q13686 389 aaKnown RBP9.83□□□□□ -0.84
USP3-218ENST00000560202 ZNF404Q494X3 552 aa9.83□□□□□ -0.84
USP3-218ENST00000560202 SOWAHCQ53LP3 525 aaPredicted RBP9.83□□□□□ -0.84
USP3-218ENST00000560202 FDX2Q6P4F2 183 aa9.83□□□□□ -0.84
USP3-218ENST00000560202 GDPGP1Q6ZNW5 385 aa9.83□□□□□ -0.84
USP3-218ENST00000560202 SYT9Q86SS6 491 aa9.83□□□□□ -0.84
USP3-218ENST00000560202 NAXEQ8NCW5 288 aa9.83□□□□□ -0.84
USP3-218ENST00000560202 STARD4Q96DR4 205 aa9.83□□□□□ -0.84
USP3-218ENST00000560202 WBP1Q96G27 269 aa9.83□□□□□ -0.84
USP3-218ENST00000560202 WACQ9BTA9 647 aa9.83□□□□□ -0.84
USP3-218ENST00000560202 CENPOQ9BU64 300 aa9.83□□□□□ -0.84
USP3-218ENST00000560202 SLIRPQ9GZT3 109 aaKnown RBP9.83□□□□□ -0.84
USP3-218ENST00000560202 KCNN2Q9H2S1 579 aa9.83□□□□□ -0.84
USP3-218ENST00000560202 EXOSC4Q9NPD3 245 aaKnown RBP9.83□□□□□ -0.84
USP3-218ENST00000560202 FRRS1LQ9P0K9 344 aa9.83□□□□□ -0.84
USP3-218ENST00000560202 TINAGQ9UJW2 476 aa9.83□□□□□ -0.84
USP3-218ENST00000560202 FBXL3Q9UKT7 428 aa9.83□□□□□ -0.84
USP3-218ENST00000560202 SSR3Q9UNL2 185 aa9.83□□□□□ -0.84
USP3-218ENST00000560202 RBMX2Q9Y388 322 aaKnown RBP9.83□□□□□ -0.84
USP3-218ENST00000560202 TLN1Q9Y490 2541 aaKnown RBP9.83□□□□□ -0.84
USP3-218ENST00000560202 A0A096LPE4 126 aa9.83□□□□□ -0.84
USP3-218ENST00000560202 A0A1W2PPZ6 126 aa9.83□□□□□ -0.84
USP3-218ENST00000560202 LOC110117498-PIK3R3F6TDL0 507 aa9.83□□□□□ -0.84
USP3-218ENST00000560202 SRSF10O75494 262 aaKnown RBP9.83□□□□□ -0.84
USP3-218ENST00000560202 CCNKO75909 580 aa9.83□□□□□ -0.84
USP3-218ENST00000560202 IL18BPO95998 194 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms