RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 ERCC1P07992 297 aaPredicted RBP9.87□□□□□ -0.83
CCDC88C-208ENST00000554165 SPI1P17947 270 aa9.87□□□□□ -0.83
CCDC88C-208ENST00000554165 GIFP27352 417 aa9.87□□□□□ -0.83
CCDC88C-208ENST00000554165 GCH1P30793 250 aa9.87□□□□□ -0.83
CCDC88C-208ENST00000554165 MMP15P51511 669 aa9.87□□□□□ -0.83
CCDC88C-208ENST00000554165 SELENOVP59797 346 aa9.87□□□□□ -0.83
CCDC88C-208ENST00000554165 PSG7Q13046 419 aa9.87□□□□□ -0.83
CCDC88C-208ENST00000554165 RIN1Q13671 783 aa9.87□□□□□ -0.83
CCDC88C-208ENST00000554165 GINS1Q14691 196 aa9.87□□□□□ -0.83
CCDC88C-208ENST00000554165 HLXQ14774 488 aaPredicted RBP9.87□□□□□ -0.83
CCDC88C-208ENST00000554165 MBNL2Q5VZF2 373 aaKnown RBP9.87□□□□□ -0.83
CCDC88C-208ENST00000554165 TEX47Q8TBZ9 253 aa9.87□□□□□ -0.83
CCDC88C-208ENST00000554165 OTULINQ96BN8 352 aa9.87□□□□□ -0.83
CCDC88C-208ENST00000554165 PITX2Q99697 317 aa9.87□□□□□ -0.83
CCDC88C-208ENST00000554165 WACQ9BTA9 647 aa9.87□□□□□ -0.83
CCDC88C-208ENST00000554165 ELOVL3Q9HB03 270 aa9.87□□□□□ -0.83
CCDC88C-208ENST00000554165 MSL2Q9HCI7 577 aa9.87□□□□□ -0.83
CCDC88C-208ENST00000554165 YAE1D1Q9NRH1 226 aa9.87□□□□□ -0.83
CCDC88C-208ENST00000554165 TREM2Q9NZC2 230 aa9.87□□□□□ -0.83
CCDC88C-208ENST00000554165 CD5LO43866 347 aa9.86□□□□□ -0.83
CCDC88C-208ENST00000554165 LILRA1O75019 489 aa9.86□□□□□ -0.83
CCDC88C-208ENST00000554165 MITFO75030 526 aaPredicted RBP9.86□□□□□ -0.83
CCDC88C-208ENST00000554165 RP2O75695 350 aa9.86□□□□□ -0.83
CCDC88C-208ENST00000554165 ATP5HO75947 161 aa9.86□□□□□ -0.83
CCDC88C-208ENST00000554165 IGHV1-46P01743 117 aa9.86□□□□□ -0.83
CCDC88C-208ENST00000554165 DAPP51397 102 aa9.86□□□□□ -0.83
CCDC88C-208ENST00000554165 ZNF81P51508 661 aa9.86□□□□□ -0.83
CCDC88C-208ENST00000554165 ARHGDIAP52565 204 aa9.86□□□□□ -0.83
CCDC88C-208ENST00000554165 SLC25A1P53007 311 aa9.86□□□□□ -0.83
CCDC88C-208ENST00000554165 KRTAP27-1Q3LI81 207 aa9.86□□□□□ -0.83
CCDC88C-208ENST00000554165 LINC01590Q5TEZ4 76 aa9.86□□□□□ -0.83
CCDC88C-208ENST00000554165 C1orf146Q5VVC0 180 aa9.86□□□□□ -0.83
CCDC88C-208ENST00000554165 SHQ1Q6PI26 577 aaKnown RBP9.86□□□□□ -0.83
CCDC88C-208ENST00000554165 Q6ZR03 302 aa9.86□□□□□ -0.83
CCDC88C-208ENST00000554165 ASRGL1Q7L266 308 aa9.86□□□□□ -0.83
CCDC88C-208ENST00000554165 ATG16L2Q8NAA4 619 aa9.86□□□□□ -0.83
CCDC88C-208ENST00000554165 GJC3Q8NFK1 279 aa9.86□□□□□ -0.83
CCDC88C-208ENST00000554165 OR6K6Q8NGW6 343 aa9.86□□□□□ -0.83
CCDC88C-208ENST00000554165 OR2AJ1Q8NGZ0 328 aa9.86□□□□□ -0.83
CCDC88C-208ENST00000554165 OR2T4Q8NH00 348 aa9.86□□□□□ -0.83
CCDC88C-208ENST00000554165 RDH5Q92781 318 aa9.86□□□□□ -0.83
CCDC88C-208ENST00000554165 PTP4A1Q93096 173 aa9.86□□□□□ -0.83
CCDC88C-208ENST00000554165 CMBLQ96DG6 245 aa9.86□□□□□ -0.83
CCDC88C-208ENST00000554165 CDADC1Q9BWV3 514 aa9.86□□□□□ -0.83
CCDC88C-208ENST00000554165 NARFLQ9H6Q4 476 aa9.86□□□□□ -0.83
CCDC88C-208ENST00000554165 CMC2Q9NRP2 79 aa9.86□□□□□ -0.83
CCDC88C-208ENST00000554165 ZNF275Q9NSD4 429 aaPredicted RBP9.86□□□□□ -0.83
CCDC88C-208ENST00000554165 TBCCD1Q9NVR7 557 aa9.86□□□□□ -0.83
CCDC88C-208ENST00000554165 SLCO1C1Q9NYB5 712 aa9.86□□□□□ -0.83
CCDC88C-208ENST00000554165 PTTG3PQ9NZH4 202 aa9.86□□□□□ -0.83
CCDC88C-208ENST00000554165 KLHL21Q9UJP4 597 aa9.86□□□□□ -0.83
CCDC88C-208ENST00000554165 FBXO9Q9UK97 447 aaPredicted RBP9.86□□□□□ -0.83
CCDC88C-208ENST00000554165 COMMD3-BMI1R4GMX3 469 aa9.86□□□□□ -0.83
CCDC88C-208ENST00000554165 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.85□□□□□ -0.83
CCDC88C-208ENST00000554165 RIIAD1A6NNX1 92 aa9.85□□□□□ -0.83
CCDC88C-208ENST00000554165 F5H5K5 113 aa9.85□□□□□ -0.83
CCDC88C-208ENST00000554165 NDUFS8O00217 210 aa9.85□□□□□ -0.83
CCDC88C-208ENST00000554165 TIMM8AO60220 97 aaPredicted RBP9.85□□□□□ -0.83
CCDC88C-208ENST00000554165 SPARCP09486 303 aa9.85□□□□□ -0.83
CCDC88C-208ENST00000554165 ACSM4P0C7M7 580 aa9.85□□□□□ -0.83
CCDC88C-208ENST00000554165 OSMP13725 252 aa9.85□□□□□ -0.83
CCDC88C-208ENST00000554165 ZNF16P17020 682 aaPredicted RBP9.85□□□□□ -0.83
CCDC88C-208ENST00000554165 GRK5P34947 590 aa9.85□□□□□ -0.83
CCDC88C-208ENST00000554165 RASSF2P50749 326 aa9.85□□□□□ -0.83
CCDC88C-208ENST00000554165 CDK5Q00535 292 aa9.85□□□□□ -0.83
CCDC88C-208ENST00000554165 GK3PQ14409 553 aa9.85□□□□□ -0.83
CCDC88C-208ENST00000554165 ATP6AP1Q15904 470 aa9.85□□□□□ -0.83
CCDC88C-208ENST00000554165 ARL9Q6T311 187 aa9.85□□□□□ -0.83
CCDC88C-208ENST00000554165 USP51Q70EK9 711 aa9.85□□□□□ -0.83
CCDC88C-208ENST00000554165 SPATC1Q76KD6 591 aa9.85□□□□□ -0.83
CCDC88C-208ENST00000554165 DCXRQ7Z4W1 244 aa9.85□□□□□ -0.83
CCDC88C-208ENST00000554165 OR5AS1Q8N127 324 aa9.85□□□□□ -0.83
CCDC88C-208ENST00000554165 BBS1Q8NFJ9 593 aa9.85□□□□□ -0.83
CCDC88C-208ENST00000554165 SNX33Q8WV41 574 aa9.85□□□□□ -0.83
CCDC88C-208ENST00000554165 LRTOMTQ8WZ04 291 aa9.85□□□□□ -0.83
CCDC88C-208ENST00000554165 HAVCR1Q96D42 359 aa9.85□□□□□ -0.83
CCDC88C-208ENST00000554165 MSI2Q96DH6 328 aaKnown RBP9.85□□□□□ -0.83
CCDC88C-208ENST00000554165 COQ7Q99807 217 aa9.85□□□□□ -0.83
CCDC88C-208ENST00000554165 HDHD2Q9H0R4 259 aa9.85□□□□□ -0.83
CCDC88C-208ENST00000554165 YY1AP1Q9H869 796 aa9.85□□□□□ -0.83
CCDC88C-208ENST00000554165 MYOZ1Q9NP98 299 aaPredicted RBP9.85□□□□□ -0.83
CCDC88C-208ENST00000554165 DCAF16Q9NXF7 216 aa9.85□□□□□ -0.83
CCDC88C-208ENST00000554165 GPR160Q9UJ42 338 aa9.85□□□□□ -0.83
CCDC88C-208ENST00000554165 PURGQ9UJV8 347 aaKnown RBP9.85□□□□□ -0.83
CCDC88C-208ENST00000554165 BAIAP2Q9UQB8 552 aa9.85□□□□□ -0.83
CCDC88C-208ENST00000554165 AP4S1Q9Y587 144 aa9.85□□□□□ -0.83
CCDC88C-208ENST00000554165 M0R129 80 aa9.84□□□□□ -0.83
CCDC88C-208ENST00000554165 ZNF593O00488 134 aaPredicted RBP9.84□□□□□ -0.83
CCDC88C-208ENST00000554165 TPD52L2O43399 206 aaKnown RBP9.84□□□□□ -0.83
CCDC88C-208ENST00000554165 DEAF1O75398 565 aaPredicted RBP9.84□□□□□ -0.83
CCDC88C-208ENST00000554165 IFNGP01579 166 aa9.84□□□□□ -0.83
CCDC88C-208ENST00000554165 ANXA8P13928 327 aa9.84□□□□□ -0.83
CCDC88C-208ENST00000554165 ZNF823P16415 610 aa9.84□□□□□ -0.83
CCDC88C-208ENST00000554165 ZNF23P17027 643 aa9.84□□□□□ -0.83
CCDC88C-208ENST00000554165 EPHA2P29317 976 aa9.84□□□□□ -0.83
CCDC88C-208ENST00000554165 FMO3P31513 532 aa9.84□□□□□ -0.83
CCDC88C-208ENST00000554165 ENTPD1P49961 510 aa9.84□□□□□ -0.83
CCDC88C-208ENST00000554165 C6orf52Q5T4I8 152 aa9.84□□□□□ -0.83
CCDC88C-208ENST00000554165 AVPI1Q5T686 147 aa9.84□□□□□ -0.83
CCDC88C-208ENST00000554165 OR2T2Q6IF00 324 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms