RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 FJX1Q86VR8 437 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 YAF2Q8IY57 180 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 KDM8Q8N371 416 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 JAGN1Q8N5M9 183 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 BHLHE23Q8NDY6 225 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 ZNF563Q8TA94 476 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 ZNF519Q8TB69 540 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 NUDCD2Q8WVJ2 157 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 ASB17Q8WXJ9 295 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 ROBO4Q8WZ75 1007 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 SLC25A36Q96CQ1 311 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 RRNAD1Q96FB5 475 aaKnown RBP4.85□□□□□ -1.63
LIMA1-212ENST00000552491 CNTNAP3BQ96NU0 1288 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 ZNF587Q96SQ5 575 aaPredicted RBP4.85□□□□□ -1.63
LIMA1-212ENST00000552491 ADOQ96SZ5 270 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 ABHD6Q9BV23 337 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 KRTAP4-8Q9BYQ9 185 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 CNTNAP3Q9BZ76 1288 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 SEMA6CQ9H3T2 930 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 GAREM1Q9H706 876 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 UBQLN4Q9NRR5 601 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 SLC39A1Q9NY26 324 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 CKLFQ9UBR5 152 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 NDRG3Q9UGV2 375 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 FBXO9Q9UK97 447 aaPredicted RBP4.85□□□□□ -1.63
LIMA1-212ENST00000552491 SLC5A6Q9Y289 635 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 MRPS33Q9Y291 106 aaKnown RBP4.85□□□□□ -1.63
LIMA1-212ENST00000552491 PRSS37A4D1T9 235 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 ZNF98A6NK75 572 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 DISC1C4P0D8 188 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 EEF1E1-BLOC1S5C9J1V9 151 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 F5H0A9 414 aaPredicted RBP4.85□□□□□ -1.63
LIMA1-212ENST00000552491 H0YIZ8 118 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 H7C2Y5 167 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 ICOSLGO75144 302 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 KLF8O95600 359 aaPredicted RBP4.85□□□□□ -1.63
LIMA1-212ENST00000552491 IL2RAP01589 272 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 CD2P06729 351 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 HLA-DOBP13765 273 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 HPGDP15428 266 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 IL11P20809 199 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 HNRNPA2B1P22626 353 aaKnown RBP4.85□□□□□ -1.63
LIMA1-212ENST00000552491 SLC37A1P57057 533 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 SKP1P63208 163 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 ADAM8P78325 824 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 ROM1Q03395 351 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 UNC119Q13432 240 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 ZNF260Q3ZCT1 412 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 PRAMEF17Q5VTA0 474 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 SLC18B1Q6NT16 456 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 TMEM71Q6P5X7 295 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 LYG2Q86SG7 212 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 ADGRE4PQ86SQ3 457 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 C19orf47Q8N9M1 422 aaKnown RBP4.85□□□□□ -1.63
LIMA1-212ENST00000552491 OR5AP2Q8NGF4 316 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 OR4A4PQ8NGN8 299 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 GPBAR1Q8TDU6 330 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 CASTOR1Q8WTX7 329 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 PTPMT1Q8WUK0 201 aaPredicted RBP4.85□□□□□ -1.63
LIMA1-212ENST00000552491 OIT3Q8WWZ8 545 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 AQP3Q92482 292 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 FAM46BQ96A09 425 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 MRGPRX1Q96LB2 322 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 TSNAXQ99598 290 aaKnown RBP4.85□□□□□ -1.63
LIMA1-212ENST00000552491 NUDT9Q9BW91 350 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 SELENOIQ9C0D9 397 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 TLNRD1Q9H1K6 362 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 ZNF768Q9H5H4 540 aaKnown RBP4.85□□□□□ -1.63
LIMA1-212ENST00000552491 TMEM231Q9H6L2 316 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 G6PC2Q9NQR9 355 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 PRR13Q9NZ81 148 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 EMC9Q9Y3B6 208 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 SLCO1B1Q9Y6L6 691 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 ASXL3Q9C0F0 2248 aa4.85□□□□□ -1.63
LIMA1-212ENST00000552491 IGKV1D-43A0A0B4J1Z2 117 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 LOC107986453A0A1B0GWG9 222 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 BLACEA4D250 179 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 MEGF11A6BM72 1044 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 C17orf105B2RV13 164 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 LINC01387J3KSC0 135 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 SCDO00767 359 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 CLDN4O14493 209 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 EFSO43281 561 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 FGF16O43320 207 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 OR2T1O43869 369 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 FADS1O60427 444 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 IL33O95760 270 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 CA3P07451 260 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 ERCC1P07992 297 aaPredicted RBP4.84□□□□□ -1.63
LIMA1-212ENST00000552491 PGAM2P15259 253 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 FSTP19883 344 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 TNFRSF4P43489 277 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 PPICP45877 212 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 NPBWR1P48145 328 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 HOXA1P49639 335 aaPredicted RBP4.84□□□□□ -1.63
LIMA1-212ENST00000552491 PNLIPRP2P54317 469 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 FMODQ06828 376 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 EIF2B1Q14232 305 aaKnown RBP4.84□□□□□ -1.63
LIMA1-212ENST00000552491 MEF2DQ14814 521 aa4.84□□□□□ -1.63
LIMA1-212ENST00000552491 CDNFQ49AH0 187 aa4.84□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms