RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 MARVELD3Q96A59 401 aa18.33■□□□□ 0.53
VPS29-206ENST00000549578 MNTQ99583 582 aa18.33■□□□□ 0.53
VPS29-206ENST00000549578 TMEM204Q9BSN7 226 aa18.33■□□□□ 0.53
VPS29-206ENST00000549578 UBAP1Q9NZ09 502 aa18.33■□□□□ 0.53
VPS29-206ENST00000549578 A0A1W2PPR1 153 aa18.33■□□□□ 0.52
VPS29-206ENST00000549578 FAM221AA4D161 298 aa18.33■□□□□ 0.52
VPS29-206ENST00000549578 SHISA9B4DS77 424 aa18.33■□□□□ 0.52
VPS29-206ENST00000549578 F5H5K5 113 aa18.33■□□□□ 0.52
VPS29-206ENST00000549578 SLC1A7O00341 560 aa18.33■□□□□ 0.52
VPS29-206ENST00000549578 MAGEB4O15481 346 aaPredicted RBP18.33■□□□□ 0.52
VPS29-206ENST00000549578 CTAG2O75638 210 aa18.33■□□□□ 0.52
VPS29-206ENST00000549578 FADS2O95864 444 aaKnown RBP18.33■□□□□ 0.52
VPS29-206ENST00000549578 OPRL1P41146 370 aa18.33■□□□□ 0.52
VPS29-206ENST00000549578 HGFACQ04756 655 aa18.33■□□□□ 0.52
VPS29-206ENST00000549578 KLHL22Q53GT1 634 aa18.33■□□□□ 0.52
VPS29-206ENST00000549578 ZNF322Q6U7Q0 402 aaPredicted RBP18.33■□□□□ 0.52
VPS29-206ENST00000549578 GGHQ92820 318 aa18.33■□□□□ 0.52
VPS29-206ENST00000549578 NEUROG1Q92886 237 aa18.33■□□□□ 0.52
VPS29-206ENST00000549578 OR51B6Q9H340 312 aa18.33■□□□□ 0.52
VPS29-206ENST00000549578 PLCXD1Q9NUJ7 323 aa18.33■□□□□ 0.52
VPS29-206ENST00000549578 SLCO1C1Q9NYB5 712 aa18.33■□□□□ 0.52
VPS29-206ENST00000549578 ROS1P08922 2347 aa18.32■□□□□ 0.52
VPS29-206ENST00000549578 BAHCC1Q9P281 2608 aa18.32■□□□□ 0.52
VPS29-206ENST00000549578 GOSR1O95249 250 aa18.32■□□□□ 0.52
VPS29-206ENST00000549578 H2BFMP0C1H6 154 aa18.32■□□□□ 0.52
VPS29-206ENST00000549578 WNT5AP41221 380 aa18.32■□□□□ 0.52
VPS29-206ENST00000549578 ZNF85Q03923 595 aa18.32■□□□□ 0.52
VPS29-206ENST00000549578 KRTAP27-1Q3LI81 207 aa18.32■□□□□ 0.52
VPS29-206ENST00000549578 ZNF704Q6ZNC4 412 aaPredicted RBP18.32■□□□□ 0.52
VPS29-206ENST00000549578 ACBD7Q8N6N7 88 aa18.32■□□□□ 0.52
VPS29-206ENST00000549578 ASB17Q8WXJ9 295 aa18.32■□□□□ 0.52
VPS29-206ENST00000549578 PSORS1C1Q9UIG5 152 aa18.32■□□□□ 0.52
VPS29-206ENST00000549578 POU2F3Q9UKI9 436 aa18.32■□□□□ 0.52
VPS29-206ENST00000549578 IKZF2Q9UKS7 526 aa18.32■□□□□ 0.52
VPS29-206ENST00000549578 GRIP1Q9Y3R0 1128 aa18.32■□□□□ 0.52
VPS29-206ENST00000549578 PCDHGB1Q9Y5G3 927 aa18.32■□□□□ 0.52
VPS29-206ENST00000549578 CELSR2Q9HCU4 2923 aa18.32■□□□□ 0.52
VPS29-206ENST00000549578 CENPEQ02224 2701 aa18.32■□□□□ 0.52
VPS29-206ENST00000549578 PHYHO14832 338 aa18.31■□□□□ 0.52
VPS29-206ENST00000549578 IGHA1P01876 353 aa18.31■□□□□ 0.52
VPS29-206ENST00000549578 ADRA2AP08913 450 aa18.31■□□□□ 0.52
VPS29-206ENST00000549578 FAM157BP0CG42 384 aa18.31■□□□□ 0.52
VPS29-206ENST00000549578 PRKXP51817 358 aa18.31■□□□□ 0.52
VPS29-206ENST00000549578 ACTC1P68032 377 aa18.31■□□□□ 0.52
VPS29-206ENST00000549578 ACTA1P68133 377 aa18.31■□□□□ 0.52
VPS29-206ENST00000549578 TLE4Q04727 773 aa18.31■□□□□ 0.52
VPS29-206ENST00000549578 KCTD18Q6PI47 426 aaPredicted RBP18.31■□□□□ 0.52
VPS29-206ENST00000549578 KRT77Q7Z794 578 aa18.31■□□□□ 0.52
VPS29-206ENST00000549578 ZNF101Q8IZC7 436 aa18.31■□□□□ 0.52
VPS29-206ENST00000549578 SPTSSAQ969W0 71 aa18.31■□□□□ 0.52
VPS29-206ENST00000549578 OR8B4Q96RC9 309 aa18.31■□□□□ 0.52
VPS29-206ENST00000549578 LRP12Q9Y561 859 aa18.31■□□□□ 0.52
VPS29-206ENST00000549578 ATP23Q9Y6H3 246 aa18.31■□□□□ 0.52
VPS29-206ENST00000549578 DAPL1A0PJW8 107 aa18.3■□□□□ 0.52
VPS29-206ENST00000549578 ABHD16AO95870 558 aa18.3■□□□□ 0.52
VPS29-206ENST00000549578 ACSM4P0C7M7 580 aa18.3■□□□□ 0.52
VPS29-206ENST00000549578 HSD11B1P28845 292 aa18.3■□□□□ 0.52
VPS29-206ENST00000549578 GRB2P62993 217 aaKnown RBP18.3■□□□□ 0.52
VPS29-206ENST00000549578 ROM1Q03395 351 aa18.3■□□□□ 0.52
VPS29-206ENST00000549578 MVKQ03426 396 aa18.3■□□□□ 0.52
VPS29-206ENST00000549578 AHSA2Q719I0 299 aa18.3■□□□□ 0.52
VPS29-206ENST00000549578 RHOUQ7L0Q8 258 aa18.3■□□□□ 0.52
VPS29-206ENST00000549578 NAA40Q86UY6 237 aa18.3■□□□□ 0.52
VPS29-206ENST00000549578 HIST2H2ABQ8IUE6 130 aaPredicted RBP18.3■□□□□ 0.52
VPS29-206ENST00000549578 ZNF786Q8N393 782 aa18.3■□□□□ 0.52
VPS29-206ENST00000549578 LILRB1Q8NHL6 650 aaPredicted RBP18.3■□□□□ 0.52
VPS29-206ENST00000549578 C4orf45Q96LM5 186 aa18.3■□□□□ 0.52
VPS29-206ENST00000549578 KCNJ15Q99712 375 aa18.3■□□□□ 0.52
VPS29-206ENST00000549578 CLEC4MQ9H2X3 399 aaPredicted RBP18.3■□□□□ 0.52
VPS29-206ENST00000549578 FGF20Q9NP95 211 aaPredicted RBP18.3■□□□□ 0.52
VPS29-206ENST00000549578 PLCE1Q9P212 2302 aa18.29■□□□□ 0.52
VPS29-206ENST00000549578 EFCAB10A6NFE3 127 aa18.29■□□□□ 0.52
VPS29-206ENST00000549578 M0R135 149 aa18.29■□□□□ 0.52
VPS29-206ENST00000549578 OTX1P32242 354 aaPredicted RBP18.29■□□□□ 0.52
VPS29-206ENST00000549578 EGR3Q06889 387 aa18.29■□□□□ 0.52
VPS29-206ENST00000549578 SNTB2Q13425 540 aaKnown RBP18.29■□□□□ 0.52
VPS29-206ENST00000549578 MED21Q13503 144 aa18.29■□□□□ 0.52
VPS29-206ENST00000549578 RFPL4BQ6ZWI9 263 aa18.29■□□□□ 0.52
VPS29-206ENST00000549578 LHFPL3Q86UP9 236 aa18.29■□□□□ 0.52
VPS29-206ENST00000549578 TMEM200AQ86VY9 491 aa18.29■□□□□ 0.52
VPS29-206ENST00000549578 ZNF679Q8IYX0 411 aa18.29■□□□□ 0.52
VPS29-206ENST00000549578 ZNF540Q8NDQ6 660 aa18.29■□□□□ 0.52
VPS29-206ENST00000549578 C14orf79Q96F83 325 aa18.29■□□□□ 0.52
VPS29-206ENST00000549578 ZNF799Q96GE5 643 aa18.29■□□□□ 0.52
VPS29-206ENST00000549578 MROQ9BYG7 248 aa18.29■□□□□ 0.52
VPS29-206ENST00000549578 ELOVL3Q9HB03 270 aa18.29■□□□□ 0.52
VPS29-206ENST00000549578 CNOT2Q9NZN8 540 aaKnown RBP18.29■□□□□ 0.52
VPS29-206ENST00000549578 MRM2Q9UI43 246 aaKnown RBP18.29■□□□□ 0.52
VPS29-206ENST00000549578 IRGMA1A4Y4 181 aa18.28■□□□□ 0.52
VPS29-206ENST00000549578 PTGES3LE9PB15 166 aa18.28■□□□□ 0.52
VPS29-206ENST00000549578 SMPD2O60906 423 aa18.28■□□□□ 0.52
VPS29-206ENST00000549578 NGFP01138 241 aa18.28■□□□□ 0.52
VPS29-206ENST00000549578 SLC2A1P11166 492 aa18.28■□□□□ 0.52
VPS29-206ENST00000549578 PIPP12273 146 aaPredicted RBP18.28■□□□□ 0.52
VPS29-206ENST00000549578 NR4A1P22736 598 aa18.28■□□□□ 0.52
VPS29-206ENST00000549578 SLC6A9P48067 706 aa18.28■□□□□ 0.52
VPS29-206ENST00000549578 CX3CR1P49238 355 aa18.28■□□□□ 0.52
VPS29-206ENST00000549578 TPTEP56180 551 aa18.28■□□□□ 0.52
VPS29-206ENST00000549578 CSNK2BP67870 215 aa18.28■□□□□ 0.52
VPS29-206ENST00000549578 ST3GAL4Q11206 333 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 73.2 ms