RNA–Protein interactions for RNA: ENST00000540230.5

UBE3B-212, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,541 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-212ENST00000540230 MED20Q9H944 212 aa12.84□□□□□ -0.35
UBE3B-212ENST00000540230 WDR76Q9H967 626 aa12.84□□□□□ -0.35
UBE3B-212ENST00000540230 CMC2Q9NRP2 79 aa12.84□□□□□ -0.35
UBE3B-212ENST00000540230 KLHL21Q9UJP4 597 aa12.84□□□□□ -0.35
UBE3B-212ENST00000540230 BAIAP2Q9UQB8 552 aa12.84□□□□□ -0.35
UBE3B-212ENST00000540230 COMMD3-BMI1R4GMX3 469 aa12.84□□□□□ -0.35
UBE3B-212ENST00000540230 MALRD1Q5VYJ5 2156 aa12.84□□□□□ -0.35
UBE3B-212ENST00000540230 FAM183AA6NL82 134 aa12.83□□□□□ -0.35
UBE3B-212ENST00000540230 LILRA1O75019 489 aa12.83□□□□□ -0.35
UBE3B-212ENST00000540230 RP2O75695 350 aa12.83□□□□□ -0.35
UBE3B-212ENST00000540230 HOXB6P17509 224 aaKnown RBP12.83□□□□□ -0.35
UBE3B-212ENST00000540230 SPI1P17947 270 aa12.83□□□□□ -0.35
UBE3B-212ENST00000540230 ANOS1P23352 680 aa12.83□□□□□ -0.35
UBE3B-212ENST00000540230 POU1F1P28069 291 aa12.83□□□□□ -0.35
UBE3B-212ENST00000540230 IL2RGP31785 369 aa12.83□□□□□ -0.35
UBE3B-212ENST00000540230 ARHGDIAP52565 204 aa12.83□□□□□ -0.35
UBE3B-212ENST00000540230 TSTQ16762 297 aaKnown RBP12.83□□□□□ -0.35
UBE3B-212ENST00000540230 KRTAP27-1Q3LI81 207 aa12.83□□□□□ -0.35
UBE3B-212ENST00000540230 SPRNQ5BIV9 151 aa12.83□□□□□ -0.35
UBE3B-212ENST00000540230 UNQ6126/PRO20091Q6UXV3 157 aa12.83□□□□□ -0.35
UBE3B-212ENST00000540230 ZNF511Q8NB15 262 aa12.83□□□□□ -0.35
UBE3B-212ENST00000540230 OR2T4Q8NH00 348 aa12.83□□□□□ -0.35
UBE3B-212ENST00000540230 UTP4Q969X6 686 aaKnown RBP12.83□□□□□ -0.35
UBE3B-212ENST00000540230 YY1AP1Q9H869 796 aa12.83□□□□□ -0.35
UBE3B-212ENST00000540230 ATPIF1Q9UII2 106 aa12.83□□□□□ -0.35
UBE3B-212ENST00000540230 SPRY3O43610 288 aa12.83□□□□□ -0.36
UBE3B-212ENST00000540230 CDC14BO60729 498 aa12.83□□□□□ -0.36
UBE3B-212ENST00000540230 IGHV1-46P01743 117 aa12.83□□□□□ -0.36
UBE3B-212ENST00000540230 ZNF16P17020 682 aaPredicted RBP12.83□□□□□ -0.36
UBE3B-212ENST00000540230 RBMXP38159 391 aaKnown RBP12.83□□□□□ -0.36
UBE3B-212ENST00000540230 ZNF81P51508 661 aa12.83□□□□□ -0.36
UBE3B-212ENST00000540230 C6orf52Q5T4I8 152 aa12.83□□□□□ -0.36
UBE3B-212ENST00000540230 LINC01590Q5TEZ4 76 aa12.83□□□□□ -0.36
UBE3B-212ENST00000540230 C1orf146Q5VVC0 180 aa12.83□□□□□ -0.36
UBE3B-212ENST00000540230 ARL9Q6T311 187 aa12.83□□□□□ -0.36
UBE3B-212ENST00000540230 NAA40Q86UY6 237 aa12.83□□□□□ -0.36
UBE3B-212ENST00000540230 RDH5Q92781 318 aa12.83□□□□□ -0.36
UBE3B-212ENST00000540230 PITX2Q99697 317 aa12.83□□□□□ -0.36
UBE3B-212ENST00000540230 CDADC1Q9BWV3 514 aa12.83□□□□□ -0.36
UBE3B-212ENST00000540230 MSL2Q9HCI7 577 aa12.83□□□□□ -0.36
UBE3B-212ENST00000540230 YAE1D1Q9NRH1 226 aa12.83□□□□□ -0.36
UBE3B-212ENST00000540230 ZNF275Q9NSD4 429 aaPredicted RBP12.83□□□□□ -0.36
UBE3B-212ENST00000540230 PTTG3PQ9NZH4 202 aa12.83□□□□□ -0.36
UBE3B-212ENST00000540230 GPR160Q9UJ42 338 aa12.83□□□□□ -0.36
UBE3B-212ENST00000540230 CACNG2Q9Y698 323 aa12.83□□□□□ -0.36
UBE3B-212ENST00000540230 H3BSA7 217 aa12.82□□□□□ -0.36
UBE3B-212ENST00000540230 WNT9BO14905 357 aa12.82□□□□□ -0.36
UBE3B-212ENST00000540230 TACSTD2P09758 323 aa12.82□□□□□ -0.36
UBE3B-212ENST00000540230 OSMP13725 252 aa12.82□□□□□ -0.36
UBE3B-212ENST00000540230 ZNF23P17027 643 aa12.82□□□□□ -0.36
UBE3B-212ENST00000540230 ACHEP22303 614 aa12.82□□□□□ -0.36
UBE3B-212ENST00000540230 GRK5P34947 590 aa12.82□□□□□ -0.36
UBE3B-212ENST00000540230 SLC25A1P53007 311 aa12.82□□□□□ -0.36
UBE3B-212ENST00000540230 PRSS12P56730 875 aa12.82□□□□□ -0.36
UBE3B-212ENST00000540230 GINS1Q14691 196 aa12.82□□□□□ -0.36
UBE3B-212ENST00000540230 HLXQ14774 488 aaPredicted RBP12.82□□□□□ -0.36
UBE3B-212ENST00000540230 TMEM236Q5W0B7 351 aa12.82□□□□□ -0.36
UBE3B-212ENST00000540230 SHQ1Q6PI26 577 aaKnown RBP12.82□□□□□ -0.36
UBE3B-212ENST00000540230 Q6ZR03 302 aa12.82□□□□□ -0.36
UBE3B-212ENST00000540230 ASRGL1Q7L266 308 aa12.82□□□□□ -0.36
UBE3B-212ENST00000540230 C1orf174Q8IYL3 243 aa12.82□□□□□ -0.36
UBE3B-212ENST00000540230 ATG16L2Q8NAA4 619 aa12.82□□□□□ -0.36
UBE3B-212ENST00000540230 OR2AJ1Q8NGZ0 328 aa12.82□□□□□ -0.36
UBE3B-212ENST00000540230 CMBLQ96DG6 245 aa12.82□□□□□ -0.36
UBE3B-212ENST00000540230 ATF6BQ99941 703 aa12.82□□□□□ -0.36
UBE3B-212ENST00000540230 MMADHCQ9H3L0 296 aaPredicted RBP12.82□□□□□ -0.36
UBE3B-212ENST00000540230 CHODLQ9H9P2 273 aa12.82□□□□□ -0.36
UBE3B-212ENST00000540230 NKIRAS2Q9NYR9 191 aa12.82□□□□□ -0.36
UBE3B-212ENST00000540230 PURGQ9UJV8 347 aaKnown RBP12.82□□□□□ -0.36
UBE3B-212ENST00000540230 RIIAD1A6NNX1 92 aa12.81□□□□□ -0.36
UBE3B-212ENST00000540230 F5H5K5 113 aa12.81□□□□□ -0.36
UBE3B-212ENST00000540230 TIMM8AO60220 97 aaPredicted RBP12.81□□□□□ -0.36
UBE3B-212ENST00000540230 DEAF1O75398 565 aaPredicted RBP12.81□□□□□ -0.36
UBE3B-212ENST00000540230 IFNGP01579 166 aa12.81□□□□□ -0.36
UBE3B-212ENST00000540230 ACSM4P0C7M7 580 aa12.81□□□□□ -0.36
UBE3B-212ENST00000540230 ANXA8P13928 327 aa12.81□□□□□ -0.36
UBE3B-212ENST00000540230 ZNF823P16415 610 aa12.81□□□□□ -0.36
UBE3B-212ENST00000540230 ZNF3P17036 446 aa12.81□□□□□ -0.36
UBE3B-212ENST00000540230 DAPP51397 102 aa12.81□□□□□ -0.36
UBE3B-212ENST00000540230 PPP2R2BQ00005 443 aa12.81□□□□□ -0.36
UBE3B-212ENST00000540230 SLC27A4Q6P1M0 643 aa12.81□□□□□ -0.36
UBE3B-212ENST00000540230 USP51Q70EK9 711 aa12.81□□□□□ -0.36
UBE3B-212ENST00000540230 ZNF540Q8NDQ6 660 aa12.81□□□□□ -0.36
UBE3B-212ENST00000540230 OR6K6Q8NGW6 343 aa12.81□□□□□ -0.36
UBE3B-212ENST00000540230 PTP4A1Q93096 173 aa12.81□□□□□ -0.36
UBE3B-212ENST00000540230 MSI2Q96DH6 328 aaKnown RBP12.81□□□□□ -0.36
UBE3B-212ENST00000540230 DCLRE1CQ96SD1 692 aaKnown RBP12.81□□□□□ -0.36
UBE3B-212ENST00000540230 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.81□□□□□ -0.36
UBE3B-212ENST00000540230 TANC2Q9HCD6 1990 aa12.8□□□□□ -0.36
UBE3B-212ENST00000540230 PLSCR5A0PG75 271 aa12.8□□□□□ -0.36
UBE3B-212ENST00000540230 SURF4O15260 269 aa12.8□□□□□ -0.36
UBE3B-212ENST00000540230 TLX2O43763 284 aaPredicted RBP12.8□□□□□ -0.36
UBE3B-212ENST00000540230 SPARCP09486 303 aa12.8□□□□□ -0.36
UBE3B-212ENST00000540230 KITLGP21583 273 aa12.8□□□□□ -0.36
UBE3B-212ENST00000540230 FMO3P31513 532 aa12.8□□□□□ -0.36
UBE3B-212ENST00000540230 CDK5Q00535 292 aa12.8□□□□□ -0.36
UBE3B-212ENST00000540230 ATP6AP1Q15904 470 aa12.8□□□□□ -0.36
UBE3B-212ENST00000540230 MOGQ16653 247 aa12.8□□□□□ -0.36
UBE3B-212ENST00000540230 PCK2Q16822 640 aa12.8□□□□□ -0.36
UBE3B-212ENST00000540230 PCGF3Q3KNV8 242 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms