RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 TVP23AA6NH52 213 aa10.78□□□□□ -0.68
CLSTN3-208ENST00000538933 SLC1A7O00341 560 aa10.78□□□□□ -0.68
CLSTN3-208ENST00000538933 DCTN6O00399 190 aa10.78□□□□□ -0.68
CLSTN3-208ENST00000538933 TMPRSS2O15393 492 aa10.78□□□□□ -0.68
CLSTN3-208ENST00000538933 WBP4O75554 376 aaKnown RBP10.78□□□□□ -0.68
CLSTN3-208ENST00000538933 DBTP11182 482 aaKnown RBP10.78□□□□□ -0.68
CLSTN3-208ENST00000538933 NPR2P20594 1047 aa10.78□□□□□ -0.68
CLSTN3-208ENST00000538933 LAP3P28838 519 aa10.78□□□□□ -0.68
CLSTN3-208ENST00000538933 GSTT1P30711 240 aa10.78□□□□□ -0.68
CLSTN3-208ENST00000538933 MTNR1AP48039 350 aa10.78□□□□□ -0.68
CLSTN3-208ENST00000538933 SH3BGRP55822 239 aaPredicted RBP10.78□□□□□ -0.68
CLSTN3-208ENST00000538933 ACTG1P63261 375 aa10.78□□□□□ -0.68
CLSTN3-208ENST00000538933 EFNB1P98172 346 aa10.78□□□□□ -0.68
CLSTN3-208ENST00000538933 TGFBR3Q03167 851 aa10.78□□□□□ -0.68
CLSTN3-208ENST00000538933 POU4F2Q12837 409 aa10.78□□□□□ -0.68
CLSTN3-208ENST00000538933 SMN1Q16637 294 aaKnown RBP10.78□□□□□ -0.68
CLSTN3-208ENST00000538933 HIST3H3Q16695 136 aa10.78□□□□□ -0.68
CLSTN3-208ENST00000538933 KLHL22Q53GT1 634 aa10.78□□□□□ -0.68
CLSTN3-208ENST00000538933 RBM48Q5RL73 367 aaKnown RBP10.78□□□□□ -0.68
CLSTN3-208ENST00000538933 C10orf128Q5T292 105 aa10.78□□□□□ -0.68
CLSTN3-208ENST00000538933 HIST2H2BDQ6DRA6 164 aa10.78□□□□□ -0.68
CLSTN3-208ENST00000538933 ZNF544Q6NX49 715 aa10.78□□□□□ -0.68
CLSTN3-208ENST00000538933 LRFN4Q6PJG9 635 aa10.78□□□□□ -0.68
CLSTN3-208ENST00000538933 ZNF813Q6ZN06 617 aa10.78□□□□□ -0.68
CLSTN3-208ENST00000538933 ZBTB46Q86UZ6 589 aa10.78□□□□□ -0.68
CLSTN3-208ENST00000538933 ERI1Q8IV48 349 aaKnown RBP10.78□□□□□ -0.68
CLSTN3-208ENST00000538933 GLB1L2Q8IW92 636 aa10.78□□□□□ -0.68
CLSTN3-208ENST00000538933 PIAS4Q8N2W9 510 aaPredicted RBP10.78□□□□□ -0.68
CLSTN3-208ENST00000538933 ZNF540Q8NDQ6 660 aa10.78□□□□□ -0.68
CLSTN3-208ENST00000538933 OR6N2Q8NGY6 317 aa10.78□□□□□ -0.68
CLSTN3-208ENST00000538933 RNFT2Q96EX2 444 aa10.78□□□□□ -0.68
CLSTN3-208ENST00000538933 CNN2Q99439 309 aaKnown RBP10.78□□□□□ -0.68
CLSTN3-208ENST00000538933 DDOQ99489 341 aa10.78□□□□□ -0.68
CLSTN3-208ENST00000538933 TEAD3Q99594 435 aa10.78□□□□□ -0.68
CLSTN3-208ENST00000538933 FOXB1Q99853 325 aa10.78□□□□□ -0.68
CLSTN3-208ENST00000538933 PIMREGQ9BSJ6 248 aa10.78□□□□□ -0.68
CLSTN3-208ENST00000538933 NMNAT2Q9BZQ4 307 aa10.78□□□□□ -0.68
CLSTN3-208ENST00000538933 MALT1Q9UDY8 824 aa10.78□□□□□ -0.68
CLSTN3-208ENST00000538933 METRNQ9UJH8 293 aa10.78□□□□□ -0.68
CLSTN3-208ENST00000538933 MYRFQ9Y2G1 1151 aa10.78□□□□□ -0.68
CLSTN3-208ENST00000538933 IGLV1-36A0A0B4J1U3 117 aa10.77□□□□□ -0.69
CLSTN3-208ENST00000538933 LOC390937A0A1W2PQ73 354 aa10.77□□□□□ -0.69
CLSTN3-208ENST00000538933 LRP5LA4QPB2 252 aa10.77□□□□□ -0.69
CLSTN3-208ENST00000538933 EFCAB10A6NFE3 127 aa10.77□□□□□ -0.69
CLSTN3-208ENST00000538933 PTGES3LE9PB15 166 aa10.77□□□□□ -0.69
CLSTN3-208ENST00000538933 XPNPEP2O43895 674 aa10.77□□□□□ -0.69
CLSTN3-208ENST00000538933 SEC14L2O76054 403 aa10.77□□□□□ -0.69
CLSTN3-208ENST00000538933 MRPL3P09001 348 aaKnown RBP10.77□□□□□ -0.69
CLSTN3-208ENST00000538933 SPARCP09486 303 aa10.77□□□□□ -0.69
CLSTN3-208ENST00000538933 COX5AP20674 150 aa10.77□□□□□ -0.69
CLSTN3-208ENST00000538933 MSR1P21757 451 aa10.77□□□□□ -0.69
CLSTN3-208ENST00000538933 SLC2A5P22732 501 aa10.77□□□□□ -0.69
CLSTN3-208ENST00000538933 PTAFRP25105 342 aa10.77□□□□□ -0.69
CLSTN3-208ENST00000538933 CD40P25942 277 aa10.77□□□□□ -0.69
CLSTN3-208ENST00000538933 MPGP29372 298 aa10.77□□□□□ -0.69
CLSTN3-208ENST00000538933 IL2RGP31785 369 aa10.77□□□□□ -0.69
CLSTN3-208ENST00000538933 CDAP32320 146 aa10.77□□□□□ -0.69
CLSTN3-208ENST00000538933 NAA10P41227 235 aaPredicted RBP10.77□□□□□ -0.69
CLSTN3-208ENST00000538933 CAPZA2P47755 286 aa10.77□□□□□ -0.69
CLSTN3-208ENST00000538933 CHN2P52757 468 aa10.77□□□□□ -0.69
CLSTN3-208ENST00000538933 CXCR4P61073 352 aa10.77□□□□□ -0.69
CLSTN3-208ENST00000538933 HSF2Q03933 536 aa10.77□□□□□ -0.69
CLSTN3-208ENST00000538933 ZNF91Q05481 1191 aa10.77□□□□□ -0.69
CLSTN3-208ENST00000538933 DBPQ10586 325 aaPredicted RBP10.77□□□□□ -0.69
CLSTN3-208ENST00000538933 STK11Q15831 433 aa10.77□□□□□ -0.69
CLSTN3-208ENST00000538933 SWI5Q1ZZU3 235 aa10.77□□□□□ -0.69
CLSTN3-208ENST00000538933 SLC22A25Q6T423 547 aa10.77□□□□□ -0.69
CLSTN3-208ENST00000538933 AHSA2Q719I0 299 aa10.77□□□□□ -0.69
CLSTN3-208ENST00000538933 SSX8Q7RTT4 187 aa10.77□□□□□ -0.69
CLSTN3-208ENST00000538933 P2RY8Q86VZ1 359 aa10.77□□□□□ -0.69
CLSTN3-208ENST00000538933 STX19Q8N4C7 294 aa10.77□□□□□ -0.69
CLSTN3-208ENST00000538933 ZNF511Q8NB15 262 aa10.77□□□□□ -0.69
CLSTN3-208ENST00000538933 OR51G2Q8NGK0 314 aa10.77□□□□□ -0.69
CLSTN3-208ENST00000538933 OR2AJ1Q8NGZ0 328 aa10.77□□□□□ -0.69
CLSTN3-208ENST00000538933 FBLIM1Q8WUP2 373 aa10.77□□□□□ -0.69
CLSTN3-208ENST00000538933 MYDGFQ969H8 173 aa10.77□□□□□ -0.69
CLSTN3-208ENST00000538933 MUCL1Q96DR8 90 aa10.77□□□□□ -0.69
CLSTN3-208ENST00000538933 SORCS2Q96PQ0 1159 aa10.77□□□□□ -0.69
CLSTN3-208ENST00000538933 INTS14Q96SY0 518 aa10.77□□□□□ -0.69
CLSTN3-208ENST00000538933 NELFAQ9H3P2 528 aa10.77□□□□□ -0.69
CLSTN3-208ENST00000538933 OCEL1Q9H607 264 aa10.77□□□□□ -0.69
CLSTN3-208ENST00000538933 CHCHD3Q9NX63 227 aaKnown RBP10.77□□□□□ -0.69
CLSTN3-208ENST00000538933 UBAP1Q9NZ09 502 aa10.77□□□□□ -0.69
CLSTN3-208ENST00000538933 PCDHGB1Q9Y5G3 927 aa10.77□□□□□ -0.69
CLSTN3-208ENST00000538933 IGKV1D-43A0A0B4J1Z2 117 aa10.76□□□□□ -0.69
CLSTN3-208ENST00000538933 CCDC182A6NF36 153 aa10.76□□□□□ -0.69
CLSTN3-208ENST00000538933 OR5H1A6NKK0 313 aa10.76□□□□□ -0.69
CLSTN3-208ENST00000538933 ZNF99A8MXY4 864 aaPredicted RBP10.76□□□□□ -0.69
CLSTN3-208ENST00000538933 RPL36A-HNRNPH2H7BZ11 118 aa10.76□□□□□ -0.69
CLSTN3-208ENST00000538933 APOL3O95236 402 aa10.76□□□□□ -0.69
CLSTN3-208ENST00000538933 TNFAIP8O95379 198 aa10.76□□□□□ -0.69
CLSTN3-208ENST00000538933 FADS2O95864 444 aaKnown RBP10.76□□□□□ -0.69
CLSTN3-208ENST00000538933 GPANK1O95872 356 aa10.76□□□□□ -0.69
CLSTN3-208ENST00000538933 CCDC159P0C7I6 412 aa10.76□□□□□ -0.69
CLSTN3-208ENST00000538933 B4GALT1P15291 398 aa10.76□□□□□ -0.69
CLSTN3-208ENST00000538933 IGHV1-2P23083 117 aa10.76□□□□□ -0.69
CLSTN3-208ENST00000538933 ENTPD1P49961 510 aa10.76□□□□□ -0.69
CLSTN3-208ENST00000538933 ZNF133P52736 654 aaPredicted RBP10.76□□□□□ -0.69
CLSTN3-208ENST00000538933 ARF1P84077 181 aaKnown RBP10.76□□□□□ -0.69
CLSTN3-208ENST00000538933 KLHL24Q6TFL4 600 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms