RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 MAJINQ3KP22 176 aa2.86□□□□□ -1.95
CD44-235ENST00000532339 CFAP157Q5JU67 520 aa2.86□□□□□ -1.95
CD44-235ENST00000532339 ZNF506Q5JVG8 444 aa2.86□□□□□ -1.95
CD44-235ENST00000532339 GPR157Q5UAW9 335 aa2.86□□□□□ -1.95
CD44-235ENST00000532339 OLFML2AQ68BL7 652 aa2.86□□□□□ -1.95
CD44-235ENST00000532339 CEACAM19Q7Z692 300 aa2.86□□□□□ -1.95
CD44-235ENST00000532339 LRRC49Q8IUZ0 686 aa2.86□□□□□ -1.95
CD44-235ENST00000532339 ZNF547Q8IVP9 402 aa2.86□□□□□ -1.95
CD44-235ENST00000532339 DEFB106AQ8N104 65 aa2.86□□□□□ -1.95
CD44-235ENST00000532339 TTC29Q8NA56 475 aaPredicted RBP2.86□□□□□ -1.95
CD44-235ENST00000532339 BEST4Q8NFU0 473 aa2.86□□□□□ -1.95
CD44-235ENST00000532339 PNPT1Q8TCS8 783 aaKnown RBP2.86□□□□□ -1.95
CD44-235ENST00000532339 SPRYD4Q8WW59 207 aaPredicted RBP2.86□□□□□ -1.95
CD44-235ENST00000532339 LCN9Q8WX39 176 aa2.86□□□□□ -1.95
CD44-235ENST00000532339 LRRC58Q96CX6 371 aa2.86□□□□□ -1.95
CD44-235ENST00000532339 SLC30A2Q9BRI3 323 aa2.86□□□□□ -1.95
CD44-235ENST00000532339 SLC39A3Q9BRY0 314 aa2.86□□□□□ -1.95
CD44-235ENST00000532339 BLZF1Q9H2G9 400 aa2.86□□□□□ -1.95
CD44-235ENST00000532339 AMBNQ9NP70 447 aa2.86□□□□□ -1.95
CD44-235ENST00000532339 GALPQ9UBC7 116 aa2.86□□□□□ -1.95
CD44-235ENST00000532339 ANAPC7Q9UJX3 599 aa2.86□□□□□ -1.95
CD44-235ENST00000532339 PSMD13Q9UNM6 376 aa2.86□□□□□ -1.95
CD44-235ENST00000532339 MOKQ9UQ07 419 aa2.86□□□□□ -1.95
CD44-235ENST00000532339 SMC3Q9UQE7 1217 aa2.86□□□□□ -1.95
CD44-235ENST00000532339 RNF24Q9Y225 148 aa2.86□□□□□ -1.95
CD44-235ENST00000532339 MRPS33Q9Y291 106 aaKnown RBP2.86□□□□□ -1.95
CD44-235ENST00000532339 GSTK1Q9Y2Q3 226 aa2.86□□□□□ -1.95
CD44-235ENST00000532339 KMT2AQ03164 3969 aa2.85□□□□□ -1.95
CD44-235ENST00000532339 TRBV7-9A0A0J9YWB2 115 aa2.85□□□□□ -1.95
CD44-235ENST00000532339 LRP5LA4QPB2 252 aa2.85□□□□□ -1.95
CD44-235ENST00000532339 ZSCAN5BA6NJL1 495 aa2.85□□□□□ -1.95
CD44-235ENST00000532339 FAM74A7A6NL05 159 aa2.85□□□□□ -1.95
CD44-235ENST00000532339 B4DSR2 109 aa2.85□□□□□ -1.95
CD44-235ENST00000532339 H7C417 338 aa2.85□□□□□ -1.95
CD44-235ENST00000532339 M0QYV0 167 aa2.85□□□□□ -1.95
CD44-235ENST00000532339 CLOCKO15516 846 aa2.85□□□□□ -1.95
CD44-235ENST00000532339 MTX2O75431 263 aa2.85□□□□□ -1.95
CD44-235ENST00000532339 STX11O75558 287 aa2.85□□□□□ -1.95
CD44-235ENST00000532339 RCBTB2O95199 551 aa2.85□□□□□ -1.95
CD44-235ENST00000532339 IGF1P05019 195 aa2.85□□□□□ -1.95
CD44-235ENST00000532339 IGFBP1P08833 259 aaPredicted RBP2.85□□□□□ -1.95
CD44-235ENST00000532339 SNRPCP09234 159 aaKnown RBP2.85□□□□□ -1.95
CD44-235ENST00000532339 BCL3P20749 454 aa2.85□□□□□ -1.95
CD44-235ENST00000532339 TBXA2RP21731 343 aa2.85□□□□□ -1.95
CD44-235ENST00000532339 UQCRC2P22695 453 aa2.85□□□□□ -1.95
CD44-235ENST00000532339 OMGP23515 440 aa2.85□□□□□ -1.95
CD44-235ENST00000532339 PSMA2P25787 234 aa2.85□□□□□ -1.95
CD44-235ENST00000532339 RGRP47804 291 aa2.85□□□□□ -1.95
CD44-235ENST00000532339 PPT1P50897 306 aa2.85□□□□□ -1.95
CD44-235ENST00000532339 ARHGDIAP52565 204 aa2.85□□□□□ -1.95
CD44-235ENST00000532339 STC1P52823 247 aa2.85□□□□□ -1.95
CD44-235ENST00000532339 KRTAP10-8P60410 259 aa2.85□□□□□ -1.95
CD44-235ENST00000532339 AP1S1P61966 158 aa2.85□□□□□ -1.95
CD44-235ENST00000532339 CBX1P83916 185 aa2.85□□□□□ -1.95
CD44-235ENST00000532339 PLOD1Q02809 727 aaPredicted RBP2.85□□□□□ -1.95
CD44-235ENST00000532339 PJVKQ0ZLH3 352 aa2.85□□□□□ -1.95
CD44-235ENST00000532339 ATXN7L3Q14CW9 347 aaPredicted RBP2.85□□□□□ -1.95
CD44-235ENST00000532339 TATDN3Q17R31 274 aa2.85□□□□□ -1.95
CD44-235ENST00000532339 FAM74A3Q4VXF1 159 aa2.85□□□□□ -1.95
CD44-235ENST00000532339 SPATA46Q5T0L3 261 aa2.85□□□□□ -1.95
CD44-235ENST00000532339 HENMT1Q5T8I9 393 aaKnown RBP2.85□□□□□ -1.95
CD44-235ENST00000532339 SLX4IPQ5VYV7 408 aa2.85□□□□□ -1.95
CD44-235ENST00000532339 TTC23Q5W5X9 447 aa2.85□□□□□ -1.95
CD44-235ENST00000532339 SAXO2Q658L1 398 aa2.85□□□□□ -1.95
CD44-235ENST00000532339 LRRC66Q68CR7 880 aa2.85□□□□□ -1.95
CD44-235ENST00000532339 LEMD1Q68G75 181 aa2.85□□□□□ -1.95
CD44-235ENST00000532339 ZFAND6Q6FIF0 208 aa2.85□□□□□ -1.95
CD44-235ENST00000532339 ADNP2Q6IQ32 1131 aa2.85□□□□□ -1.95
CD44-235ENST00000532339 STAC2Q6ZMT1 411 aa2.85□□□□□ -1.95
CD44-235ENST00000532339 LANCL3Q6ZV70 420 aa2.85□□□□□ -1.95
CD44-235ENST00000532339 CYS1Q717R9 158 aa2.85□□□□□ -1.95
CD44-235ENST00000532339 LCA5Q86VQ0 697 aa2.85□□□□□ -1.95
CD44-235ENST00000532339 CSNK1G2-AS1Q8NCQ2 148 aa2.85□□□□□ -1.95
CD44-235ENST00000532339 RFESDQ8TAC1 157 aa2.85□□□□□ -1.95
CD44-235ENST00000532339 NEIL3Q8TAT5 605 aa2.85□□□□□ -1.95
CD44-235ENST00000532339 RAB3IL1Q8TBN0 382 aa2.85□□□□□ -1.95
CD44-235ENST00000532339 RPL3LQ92901 407 aaKnown RBP2.85□□□□□ -1.95
CD44-235ENST00000532339 MYCBPQ99417 103 aaPredicted RBP2.85□□□□□ -1.95
CD44-235ENST00000532339 OR10H1Q9Y4A9 318 aa2.85□□□□□ -1.95
CD44-235ENST00000532339 C15orf38-AP3S2A0A0A6YYH1 394 aa2.84□□□□□ -1.95
CD44-235ENST00000532339 A0A0J9YY10 115 aa2.84□□□□□ -1.95
CD44-235ENST00000532339 CLPSL1A2RUU4 121 aa2.84□□□□□ -1.95
CD44-235ENST00000532339 ZNF487B1APH4 448 aa2.84□□□□□ -1.95
CD44-235ENST00000532339 SHISA9B4DS77 424 aa2.84□□□□□ -1.95
CD44-235ENST00000532339 STX7O15400 261 aaKnown RBP2.84□□□□□ -1.95
CD44-235ENST00000532339 B4GALT2O60909 372 aa2.84□□□□□ -1.95
CD44-235ENST00000532339 TNFSF13O75888 250 aa2.84□□□□□ -1.95
CD44-235ENST00000532339 CDK14O94921 469 aa2.84□□□□□ -1.95
CD44-235ENST00000532339 SLC25A14O95258 325 aaPredicted RBP2.84□□□□□ -1.95
CD44-235ENST00000532339 TACSTD2P09758 323 aa2.84□□□□□ -1.95
CD44-235ENST00000532339 BCKDHAP12694 445 aa2.84□□□□□ -1.95
CD44-235ENST00000532339 H2AFXP16104 143 aaPredicted RBP2.84□□□□□ -1.95
CD44-235ENST00000532339 IL2RGP31785 369 aa2.84□□□□□ -1.95
CD44-235ENST00000532339 CHI3L1P36222 383 aaPredicted RBP2.84□□□□□ -1.95
CD44-235ENST00000532339 EMDP50402 254 aa2.84□□□□□ -1.95
CD44-235ENST00000532339 EWSR1Q01844 656 aaKnown RBP eCLIP2.84□□□□□ -1.95
CD44-235ENST00000532339 RCAN2Q14206 197 aa2.84□□□□□ -1.95
CD44-235ENST00000532339 RNF212Q495C1 297 aa2.84□□□□□ -1.95
CD44-235ENST00000532339 CCDC14Q49A88 953 aa2.84□□□□□ -1.95
CD44-235ENST00000532339 EIPR1Q53HC9 387 aa2.84□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms