RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 ZMAT3Q9HA38 289 aaKnown RBP9.54□□□□□ -0.88
VPS28-214ENST00000531032 NMNAT1Q9HAN9 279 aaPredicted RBP9.54□□□□□ -0.88
VPS28-214ENST00000531032 GCM1Q9NP62 436 aa9.54□□□□□ -0.88
VPS28-214ENST00000531032 SPAG4Q9NPE6 437 aa9.54□□□□□ -0.88
VPS28-214ENST00000531032 FAM53CQ9NYF3 392 aa9.54□□□□□ -0.88
VPS28-214ENST00000531032 VSX1Q9NZR4 365 aaPredicted RBP9.54□□□□□ -0.88
VPS28-214ENST00000531032 ASH2LQ9UBL3 628 aa9.54□□□□□ -0.88
VPS28-214ENST00000531032 ZNF69Q9UC07 566 aa9.54□□□□□ -0.88
VPS28-214ENST00000531032 RPS6KA6Q9UK32 745 aa9.54□□□□□ -0.88
VPS28-214ENST00000531032 SIGLEC7Q9Y286 467 aa9.54□□□□□ -0.88
VPS28-214ENST00000531032 TMEM5Q9Y2B1 443 aa9.54□□□□□ -0.88
VPS28-214ENST00000531032 A0A1W2PRQ8 180 aa9.53□□□□□ -0.88
VPS28-214ENST00000531032 DNAJC9-AS1A6NH13 148 aa9.53□□□□□ -0.88
VPS28-214ENST00000531032 CEACAM18A8MTB9 384 aa9.53□□□□□ -0.88
VPS28-214ENST00000531032 IFNL4K9M1U5 179 aa9.53□□□□□ -0.88
VPS28-214ENST00000531032 TMPRSS2O15393 492 aa9.53□□□□□ -0.88
VPS28-214ENST00000531032 SLC16A7O60669 478 aa9.53□□□□□ -0.88
VPS28-214ENST00000531032 PTP4A3O75365 173 aa9.53□□□□□ -0.88
VPS28-214ENST00000531032 NCK1P16333 377 aa9.53□□□□□ -0.88
VPS28-214ENST00000531032 CPT2P23786 658 aa9.53□□□□□ -0.88
VPS28-214ENST00000531032 SDHAP31040 664 aa9.53□□□□□ -0.88
VPS28-214ENST00000531032 RGS6P49758 472 aa9.53□□□□□ -0.88
VPS28-214ENST00000531032 MXRA7P84157 204 aa9.53□□□□□ -0.88
VPS28-214ENST00000531032 DGCR6Q14129 220 aa9.53□□□□□ -0.88
VPS28-214ENST00000531032 CCDC92Q53HC0 331 aaPredicted RBP9.53□□□□□ -0.88
VPS28-214ENST00000531032 ESCO2Q56NI9 601 aa9.53□□□□□ -0.88
VPS28-214ENST00000531032 GPR139Q6DWJ6 353 aa9.53□□□□□ -0.88
VPS28-214ENST00000531032 SHISA2Q6UWI4 295 aa9.53□□□□□ -0.88
VPS28-214ENST00000531032 RRM2BQ7LG56 351 aa9.53□□□□□ -0.88
VPS28-214ENST00000531032 TSEN54Q7Z6J9 526 aaKnown RBP9.53□□□□□ -0.88
VPS28-214ENST00000531032 ADCK1Q86TW2 530 aa9.53□□□□□ -0.88
VPS28-214ENST00000531032 GLB1L2Q8IW92 636 aa9.53□□□□□ -0.88
VPS28-214ENST00000531032 OR1F12Q8NHA8 337 aa9.53□□□□□ -0.88
VPS28-214ENST00000531032 ZNF48Q96MX3 618 aaPredicted RBP9.53□□□□□ -0.88
VPS28-214ENST00000531032 NRIP3Q9NQ35 241 aa9.53□□□□□ -0.88
VPS28-214ENST00000531032 OR5V1Q9UGF6 321 aa9.53□□□□□ -0.88
VPS28-214ENST00000531032 LRCH1Q9Y2L9 728 aa9.53□□□□□ -0.88
VPS28-214ENST00000531032 COA3Q9Y2R0 106 aaPredicted RBP9.53□□□□□ -0.88
VPS28-214ENST00000531032 FAM32AQ9Y421 112 aaKnown RBP9.53□□□□□ -0.88
VPS28-214ENST00000531032 PCDHGB1Q9Y5G3 927 aa9.53□□□□□ -0.88
VPS28-214ENST00000531032 CLDN34H7C241 214 aa9.52□□□□□ -0.89
VPS28-214ENST00000531032 IMPA2O14732 288 aa9.52□□□□□ -0.89
VPS28-214ENST00000531032 RER1O15258 196 aa9.52□□□□□ -0.89
VPS28-214ENST00000531032 KHDRBS3O75525 346 aaKnown RBP9.52□□□□□ -0.89
VPS28-214ENST00000531032 NDUFB2O95178 105 aa9.52□□□□□ -0.89
VPS28-214ENST00000531032 FSTL3O95633 263 aa9.52□□□□□ -0.89
VPS28-214ENST00000531032 TXNDC12O95881 172 aa9.52□□□□□ -0.89
VPS28-214ENST00000531032 DBHP09172 617 aa9.52□□□□□ -0.89
VPS28-214ENST00000531032 WNT2P09544 360 aa9.52□□□□□ -0.89
VPS28-214ENST00000531032 PPIAL4GP0DN37 164 aa9.52□□□□□ -0.89
VPS28-214ENST00000531032 GYS2P54840 703 aa9.52□□□□□ -0.89
VPS28-214ENST00000531032 FXYD6P3P58550 94 aa9.52□□□□□ -0.89
VPS28-214ENST00000531032 PAX2Q02962 417 aa9.52□□□□□ -0.89
VPS28-214ENST00000531032 PAX8Q06710 450 aa9.52□□□□□ -0.89
VPS28-214ENST00000531032 HLXQ14774 488 aaPredicted RBP9.52□□□□□ -0.89
VPS28-214ENST00000531032 KCNMB1Q16558 191 aa9.52□□□□□ -0.89
VPS28-214ENST00000531032 FGD3Q5JSP0 725 aa9.52□□□□□ -0.89
VPS28-214ENST00000531032 OTPQ5XKR4 325 aa9.52□□□□□ -0.89
VPS28-214ENST00000531032 SLC27A4Q6P1M0 643 aa9.52□□□□□ -0.89
VPS28-214ENST00000531032 C1orf94Q6P1W5 598 aa9.52□□□□□ -0.89
VPS28-214ENST00000531032 C8orf82Q6P1X6 216 aaPredicted RBP9.52□□□□□ -0.89
VPS28-214ENST00000531032 C9orf139Q6ZV77 190 aa9.52□□□□□ -0.89
VPS28-214ENST00000531032 OR5AS1Q8N127 324 aa9.52□□□□□ -0.89
VPS28-214ENST00000531032 BCL6BQ8N143 479 aaPredicted RBP9.52□□□□□ -0.89
VPS28-214ENST00000531032 ATG16L2Q8NAA4 619 aa9.52□□□□□ -0.89
VPS28-214ENST00000531032 OR8G5Q8NG78 346 aa9.52□□□□□ -0.89
VPS28-214ENST00000531032 OR10AD1Q8NGE0 317 aa9.52□□□□□ -0.89
VPS28-214ENST00000531032 OR5L1Q8NGL2 311 aa9.52□□□□□ -0.89
VPS28-214ENST00000531032 DACT3Q96B18 629 aaPredicted RBP9.52□□□□□ -0.89
VPS28-214ENST00000531032 FAM46AQ96IP4 442 aaKnown RBP9.52□□□□□ -0.89
VPS28-214ENST00000531032 MEGF10Q96KG7 1140 aa9.52□□□□□ -0.89
VPS28-214ENST00000531032 DUX5Q96PT3 197 aa9.52□□□□□ -0.89
VPS28-214ENST00000531032 MYLK2Q9H1R3 596 aa9.52□□□□□ -0.89
VPS28-214ENST00000531032 ZNF696Q9H7X3 374 aa9.52□□□□□ -0.89
VPS28-214ENST00000531032 KRCC1Q9NPI7 259 aaPredicted RBP9.52□□□□□ -0.89
VPS28-214ENST00000531032 ABCD2Q9UBJ2 740 aa9.52□□□□□ -0.89
VPS28-214ENST00000531032 IL20RAQ9UHF4 553 aa9.52□□□□□ -0.89
VPS28-214ENST00000531032 SAMD4AQ9UPU9 718 aaKnown RBP9.52□□□□□ -0.89
VPS28-214ENST00000531032 ARL2BPQ9Y2Y0 163 aa9.52□□□□□ -0.89
VPS28-214ENST00000531032 ENPP4Q9Y6X5 453 aa9.52□□□□□ -0.89
VPS28-214ENST00000531032 A0A1B0GWJ7 208 aa9.51□□□□□ -0.89
VPS28-214ENST00000531032 DCTN3O75935 186 aa9.51□□□□□ -0.89
VPS28-214ENST00000531032 H1F0P07305 194 aaKnown RBP9.51□□□□□ -0.89
VPS28-214ENST00000531032 RNASE1P07998 156 aaKnown RBP9.51□□□□□ -0.89
VPS28-214ENST00000531032 CD80P33681 288 aa9.51□□□□□ -0.89
VPS28-214ENST00000531032 OMPP47874 163 aa9.51□□□□□ -0.89
VPS28-214ENST00000531032 HIST1H3AP68431 136 aa9.51□□□□□ -0.89
VPS28-214ENST00000531032 BAMBIQ13145 260 aa9.51□□□□□ -0.89
VPS28-214ENST00000531032 KRT72Q14CN4 511 aa9.51□□□□□ -0.89
VPS28-214ENST00000531032 ZNF181Q2M3W8 571 aa9.51□□□□□ -0.89
VPS28-214ENST00000531032 HIST2H3PS2Q5TEC6 136 aa9.51□□□□□ -0.89
VPS28-214ENST00000531032 OR2T2Q6IF00 324 aa9.51□□□□□ -0.89
VPS28-214ENST00000531032 PGM2L1Q6PCE3 622 aa9.51□□□□□ -0.89
VPS28-214ENST00000531032 DPY19L2P2Q6ZN68 376 aa9.51□□□□□ -0.89
VPS28-214ENST00000531032 PTCHD4Q6ZW05 846 aa9.51□□□□□ -0.89
VPS28-214ENST00000531032 HIST2H3AQ71DI3 136 aa9.51□□□□□ -0.89
VPS28-214ENST00000531032 RNF148Q8N7C7 305 aa9.51□□□□□ -0.89
VPS28-214ENST00000531032 OR13G1Q8NGZ3 307 aa9.51□□□□□ -0.89
VPS28-214ENST00000531032 APOBEC3DQ96AK3 386 aaPredicted RBP9.51□□□□□ -0.89
VPS28-214ENST00000531032 RSRC1Q96IZ7 334 aaKnown RBP9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms