RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 CD46P15529 392 aa18.28■□□□□ 0.52
VPS28-209ENST00000528142 ZNF708P17019 499 aa18.28■□□□□ 0.52
VPS28-209ENST00000528142 IGFBP3P17936 291 aaPredicted RBP18.28■□□□□ 0.52
VPS28-209ENST00000528142 FSTP19883 344 aa18.28■□□□□ 0.52
VPS28-209ENST00000528142 CLDN12P56749 244 aa18.28■□□□□ 0.52
VPS28-209ENST00000528142 TRIQKQ629K1 86 aa18.28■□□□□ 0.52
VPS28-209ENST00000528142 PYHIN1Q6K0P9 492 aa18.28■□□□□ 0.52
VPS28-209ENST00000528142 FCRLAQ7L513 359 aa18.28■□□□□ 0.52
VPS28-209ENST00000528142 SCMH1Q96GD3 660 aa18.28■□□□□ 0.52
VPS28-209ENST00000528142 RBM24Q9BX46 236 aaKnown RBP18.28■□□□□ 0.52
VPS28-209ENST00000528142 C11orf54Q9H0W9 315 aaPredicted RBP18.28■□□□□ 0.52
VPS28-209ENST00000528142 OR5V1Q9UGF6 321 aa18.28■□□□□ 0.52
VPS28-209ENST00000528142 CD2P06729 351 aa18.27■□□□□ 0.52
VPS28-209ENST00000528142 ACSM4P0C7M7 580 aa18.27■□□□□ 0.52
VPS28-209ENST00000528142 GUCA1AP43080 201 aaPredicted RBP18.27■□□□□ 0.52
VPS28-209ENST00000528142 PSMA6P60900 246 aaKnown RBP18.27■□□□□ 0.52
VPS28-209ENST00000528142 CMTM4Q8IZR5 234 aa18.27■□□□□ 0.52
VPS28-209ENST00000528142 SLC25A38Q96DW6 304 aa18.27■□□□□ 0.52
VPS28-209ENST00000528142 ZNF837Q96EG3 531 aaPredicted RBP18.27■□□□□ 0.52
VPS28-209ENST00000528142 NEDD4LQ96PU5 975 aa18.27■□□□□ 0.52
VPS28-209ENST00000528142 DDX28Q9NUL7 540 aaKnown RBP18.27■□□□□ 0.52
VPS28-209ENST00000528142 NUFIP1Q9UHK0 495 aaKnown RBP18.27■□□□□ 0.52
VPS28-209ENST00000528142 P2RY10O00398 339 aa18.26■□□□□ 0.51
VPS28-209ENST00000528142 CD37P11049 281 aa18.26■□□□□ 0.51
VPS28-209ENST00000528142 HIST1H3AP68431 136 aa18.26■□□□□ 0.51
VPS28-209ENST00000528142 MRPS34P82930 218 aaKnown RBP18.26■□□□□ 0.51
VPS28-209ENST00000528142 HIST2H3PS2Q5TEC6 136 aa18.26■□□□□ 0.51
VPS28-209ENST00000528142 HIST2H3AQ71DI3 136 aa18.26■□□□□ 0.51
VPS28-209ENST00000528142 AAED1Q7RTV5 226 aa18.26■□□□□ 0.51
VPS28-209ENST00000528142 NEURL2Q9BR09 285 aa18.26■□□□□ 0.51
VPS28-209ENST00000528142 CAMK2AQ9UQM7 478 aa18.26■□□□□ 0.51
VPS28-209ENST00000528142 UBL3O95164 117 aa18.26■□□□□ 0.51
VPS28-209ENST00000528142 ADRB1P08588 477 aa18.26■□□□□ 0.51
VPS28-209ENST00000528142 CTSSP25774 331 aa18.26■□□□□ 0.51
VPS28-209ENST00000528142 HSD11B1P28845 292 aa18.26■□□□□ 0.51
VPS28-209ENST00000528142 NR4A2P43354 598 aa18.26■□□□□ 0.51
VPS28-209ENST00000528142 ZNF84P51523 738 aa18.26■□□□□ 0.51
VPS28-209ENST00000528142 PPIAP62937 165 aaKnown RBP18.26■□□□□ 0.51
VPS28-209ENST00000528142 ARG2P78540 354 aa18.26■□□□□ 0.51
VPS28-209ENST00000528142 PNPLA5Q7Z6Z6 429 aaPredicted RBP18.26■□□□□ 0.51
VPS28-209ENST00000528142 ZNF554Q86TJ5 538 aa18.26■□□□□ 0.51
VPS28-209ENST00000528142 C19orf18Q8NEA5 215 aa18.26■□□□□ 0.51
VPS28-209ENST00000528142 OR13C3Q8NGS6 347 aa18.26■□□□□ 0.51
VPS28-209ENST00000528142 ABHD3Q8WU67 409 aa18.26■□□□□ 0.51
VPS28-209ENST00000528142 SLC22A4Q9H015 551 aa18.26■□□□□ 0.51
VPS28-209ENST00000528142 ABCG5Q9H222 651 aa18.26■□□□□ 0.51
VPS28-209ENST00000528142 MOB1AQ9H8S9 216 aa18.26■□□□□ 0.51
VPS28-209ENST00000528142 TAS2R4Q9NYW5 299 aa18.26■□□□□ 0.51
VPS28-209ENST00000528142 KIAA1549Q9HCM3 1950 aa18.25■□□□□ 0.51
VPS28-209ENST00000528142 TAF13Q15543 124 aa18.25■□□□□ 0.51
VPS28-209ENST00000528142 FAM27BQ5VT28 67 aa18.25■□□□□ 0.51
VPS28-209ENST00000528142 TRIM63Q969Q1 353 aa18.25■□□□□ 0.51
VPS28-209ENST00000528142 THAP7Q9BT49 309 aaPredicted RBP18.25■□□□□ 0.51
VPS28-209ENST00000528142 ACKR4Q9NPB9 350 aa18.25■□□□□ 0.51
VPS28-209ENST00000528142 STEAP1Q9UHE8 339 aa18.25■□□□□ 0.51
VPS28-209ENST00000528142 ETV7Q9Y603 341 aa18.25■□□□□ 0.51
VPS28-209ENST00000528142 IGKV3D-15A0A087WSY6 115 aa18.24■□□□□ 0.51
VPS28-209ENST00000528142 LMX1BO60663 402 aa18.24■□□□□ 0.51
VPS28-209ENST00000528142 PRKXP51817 358 aa18.24■□□□□ 0.51
VPS28-209ENST00000528142 SCAND1P57086 179 aa18.24■□□□□ 0.51
VPS28-209ENST00000528142 GRB2P62993 217 aaKnown RBP18.24■□□□□ 0.51
VPS28-209ENST00000528142 SRYQ05066 204 aa18.24■□□□□ 0.51
VPS28-209ENST00000528142 RTP5Q14D33 572 aa18.24■□□□□ 0.51
VPS28-209ENST00000528142 BCL2A1Q16548 175 aa18.24■□□□□ 0.51
VPS28-209ENST00000528142 ZNF766Q5HY98 468 aa18.24■□□□□ 0.51
VPS28-209ENST00000528142 FAM166AQ6J272 317 aa18.24■□□□□ 0.51
VPS28-209ENST00000528142 BAIAP2L2Q6UXY1 529 aa18.24■□□□□ 0.51
VPS28-209ENST00000528142 CELF2-AS1Q8N7Q2 184 aa18.24■□□□□ 0.51
VPS28-209ENST00000528142 GJC3Q8NFK1 279 aa18.24■□□□□ 0.51
VPS28-209ENST00000528142 TMEM45BQ96B21 275 aa18.24■□□□□ 0.51
VPS28-209ENST00000528142 CKLFQ9UBR5 152 aa18.24■□□□□ 0.51
VPS28-209ENST00000528142 KLK13Q9UKR3 277 aa18.24■□□□□ 0.51
VPS28-209ENST00000528142 CNTRLQ7Z7A1 2325 aa18.24■□□□□ 0.51
VPS28-209ENST00000528142 SPTBN2O15020 2390 aa18.24■□□□□ 0.51
VPS28-209ENST00000528142 A0A1B0GTI1 187 aa18.23■□□□□ 0.51
VPS28-209ENST00000528142 LANCL1O43813 399 aa18.23■□□□□ 0.51
VPS28-209ENST00000528142 ITGB2P05107 769 aa18.23■□□□□ 0.51
VPS28-209ENST00000528142 SPINK2P20155 84 aa18.23■□□□□ 0.51
VPS28-209ENST00000528142 ZNF121P58317 390 aaPredicted RBP18.23■□□□□ 0.51
VPS28-209ENST00000528142 LINGO2Q7L985 606 aa18.23■□□□□ 0.51
VPS28-209ENST00000528142 MEIOBQ8N635 442 aa18.23■□□□□ 0.51
VPS28-209ENST00000528142 CPT1CQ8TCG5 803 aa18.23■□□□□ 0.51
VPS28-209ENST00000528142 CRLF2Q9HC73 371 aa18.23■□□□□ 0.51
VPS28-209ENST00000528142 ZNF275Q9NSD4 429 aaPredicted RBP18.23■□□□□ 0.51
VPS28-209ENST00000528142 TNFSF10P50591 281 aa18.23■□□□□ 0.51
VPS28-209ENST00000528142 MMP15P51511 669 aa18.23■□□□□ 0.51
VPS28-209ENST00000528142 CCL11P51671 97 aa18.23■□□□□ 0.51
VPS28-209ENST00000528142 PITPNAQ00169 270 aa18.23■□□□□ 0.51
VPS28-209ENST00000528142 SLC10A1Q14973 349 aa18.23■□□□□ 0.51
VPS28-209ENST00000528142 CCDC92Q53HC0 331 aaPredicted RBP18.23■□□□□ 0.51
VPS28-209ENST00000528142 RIPPLY2Q5TAB7 128 aa18.23■□□□□ 0.51
VPS28-209ENST00000528142 PRSS45Q7RTY3 260 aa18.23■□□□□ 0.51
VPS28-209ENST00000528142 LRRC18Q8N456 261 aa18.23■□□□□ 0.51
VPS28-209ENST00000528142 FAM109AQ8N4B1 249 aa18.23■□□□□ 0.51
VPS28-209ENST00000528142 FDCSPQ8NFU4 85 aa18.23■□□□□ 0.51
VPS28-209ENST00000528142 RFT1Q96AA3 541 aa18.23■□□□□ 0.51
VPS28-209ENST00000528142 ZNF319Q9P2F9 582 aa18.23■□□□□ 0.51
VPS28-209ENST00000528142 SLC17A2O00624 439 aa18.22■□□□□ 0.51
VPS28-209ENST00000528142 ITGA5P08648 1049 aa18.22■□□□□ 0.51
VPS28-209ENST00000528142 ANOS1P23352 680 aa18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms