RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 BNIP1Q12981 228 aa9.03□□□□□ -0.96
CD44-227ENST00000528086 CRMP1Q14194 572 aa9.03□□□□□ -0.96
CD44-227ENST00000528086 AVPI1Q5T686 147 aa9.03□□□□□ -0.96
CD44-227ENST00000528086 CD300LDQ6UXZ3 194 aa9.03□□□□□ -0.96
CD44-227ENST00000528086 C1orf229Q6ZS94 237 aaPredicted RBP9.03□□□□□ -0.96
CD44-227ENST00000528086 USP51Q70EK9 711 aa9.03□□□□□ -0.96
CD44-227ENST00000528086 ALDH16A1Q8IZ83 802 aa9.03□□□□□ -0.96
CD44-227ENST00000528086 IQCF1Q8N6M8 205 aa9.03□□□□□ -0.96
CD44-227ENST00000528086 OR9Q1Q8NGQ5 310 aa9.03□□□□□ -0.96
CD44-227ENST00000528086 HAVCR1Q96D42 359 aa9.03□□□□□ -0.96
CD44-227ENST00000528086 NARFLQ9H6Q4 476 aa9.03□□□□□ -0.96
CD44-227ENST00000528086 WDR76Q9H967 626 aa9.03□□□□□ -0.96
CD44-227ENST00000528086 EIF3KQ9UBQ5 218 aaKnown RBP9.03□□□□□ -0.96
CD44-227ENST00000528086 PURGQ9UJV8 347 aaKnown RBP9.03□□□□□ -0.96
CD44-227ENST00000528086 NDRG4Q9ULP0 352 aaKnown RBP9.03□□□□□ -0.96
CD44-227ENST00000528086 TMCC3Q9ULS5 477 aa9.03□□□□□ -0.96
CD44-227ENST00000528086 GRIP1Q9Y3R0 1128 aa9.03□□□□□ -0.96
CD44-227ENST00000528086 A0A1B0GWJ7 208 aa9.02□□□□□ -0.97
CD44-227ENST00000528086 TVP23AA6NH52 213 aa9.02□□□□□ -0.97
CD44-227ENST00000528086 AQP12BA6NM10 295 aa9.02□□□□□ -0.97
CD44-227ENST00000528086 H3BSA7 217 aa9.02□□□□□ -0.97
CD44-227ENST00000528086 TGFAP01135 160 aa9.02□□□□□ -0.97
CD44-227ENST00000528086 GYPBP06028 91 aa9.02□□□□□ -0.97
CD44-227ENST00000528086 CD55P08174 381 aa9.02□□□□□ -0.97
CD44-227ENST00000528086 ACSM4P0C7M7 580 aa9.02□□□□□ -0.97
CD44-227ENST00000528086 RAP2AP10114 183 aa9.02□□□□□ -0.97
CD44-227ENST00000528086 CRABP1P29762 137 aa9.02□□□□□ -0.97
CD44-227ENST00000528086 GPR6P46095 362 aaPredicted RBP9.02□□□□□ -0.97
CD44-227ENST00000528086 CHN2P52757 468 aa9.02□□□□□ -0.97
CD44-227ENST00000528086 TMEM33P57088 247 aa9.02□□□□□ -0.97
CD44-227ENST00000528086 SRSF2Q01130 221 aaKnown RBP9.02□□□□□ -0.97
CD44-227ENST00000528086 PCK2Q16822 640 aa9.02□□□□□ -0.97
CD44-227ENST00000528086 FAM120AOSQ5T036 256 aa9.02□□□□□ -0.97
CD44-227ENST00000528086 ACSM5Q6NUN0 579 aa9.02□□□□□ -0.97
CD44-227ENST00000528086 AQP12AQ8IXF9 295 aa9.02□□□□□ -0.97
CD44-227ENST00000528086 ZNF511Q8NB15 262 aa9.02□□□□□ -0.97
CD44-227ENST00000528086 PAPD5Q8NDF8 572 aaKnown RBP9.02□□□□□ -0.97
CD44-227ENST00000528086 ZNF540Q8NDQ6 660 aa9.02□□□□□ -0.97
CD44-227ENST00000528086 OR10G2Q8NGC3 310 aa9.02□□□□□ -0.97
CD44-227ENST00000528086 HPS1Q92902 700 aa9.02□□□□□ -0.97
CD44-227ENST00000528086 PTP4A1Q93096 173 aa9.02□□□□□ -0.97
CD44-227ENST00000528086 CMBLQ96DG6 245 aa9.02□□□□□ -0.97
CD44-227ENST00000528086 SIGLEC11Q96RL6 698 aa9.02□□□□□ -0.97
CD44-227ENST00000528086 FEVQ99581 238 aa9.02□□□□□ -0.97
CD44-227ENST00000528086 COQ7Q99807 217 aa9.02□□□□□ -0.97
CD44-227ENST00000528086 TSSK6Q9BXA6 273 aa9.02□□□□□ -0.97
CD44-227ENST00000528086 MED20Q9H944 212 aa9.02□□□□□ -0.97
CD44-227ENST00000528086 ATPIF1Q9UII2 106 aa9.02□□□□□ -0.97
CD44-227ENST00000528086 POMPQ9Y244 141 aa9.02□□□□□ -0.97
CD44-227ENST00000528086 IGHV1-69-2A0A0G2JMI3 117 aa9.01□□□□□ -0.97
CD44-227ENST00000528086 DHRS12A0PJE2 317 aa9.01□□□□□ -0.97
CD44-227ENST00000528086 H0YL77 283 aa9.01□□□□□ -0.97
CD44-227ENST00000528086 GSC2O15499 205 aa9.01□□□□□ -0.97
CD44-227ENST00000528086 MLNRO43193 412 aa9.01□□□□□ -0.97
CD44-227ENST00000528086 RENP00797 406 aa9.01□□□□□ -0.97
CD44-227ENST00000528086 AVPP01185 164 aa9.01□□□□□ -0.97
CD44-227ENST00000528086 FAM157CP0CG43 387 aa9.01□□□□□ -0.97
CD44-227ENST00000528086 PRKACGP22612 351 aa9.01□□□□□ -0.97
CD44-227ENST00000528086 OTX1P32242 354 aaPredicted RBP9.01□□□□□ -0.97
CD44-227ENST00000528086 IFNGR2P38484 337 aa9.01□□□□□ -0.97
CD44-227ENST00000528086 PMELP40967 661 aa9.01□□□□□ -0.97
CD44-227ENST00000528086 CENPAP49450 140 aa9.01□□□□□ -0.97
CD44-227ENST00000528086 HOXA4Q00056 320 aaPredicted RBP9.01□□□□□ -0.97
CD44-227ENST00000528086 CR1LQ2VPA4 569 aa9.01□□□□□ -0.97
CD44-227ENST00000528086 PCGF3Q3KNV8 242 aa9.01□□□□□ -0.97
CD44-227ENST00000528086 FAM98BQ52LJ0 330 aaKnown RBP9.01□□□□□ -0.97
CD44-227ENST00000528086 FAM209AQ5JX71 171 aa9.01□□□□□ -0.97
CD44-227ENST00000528086 OR2T2Q6IF00 324 aa9.01□□□□□ -0.97
CD44-227ENST00000528086 FAM166AQ6J272 317 aa9.01□□□□□ -0.97
CD44-227ENST00000528086 TMEM154Q6P9G4 183 aa9.01□□□□□ -0.97
CD44-227ENST00000528086 FBXW12Q6X9E4 464 aa9.01□□□□□ -0.97
CD44-227ENST00000528086 JAZF1Q86VZ6 243 aa9.01□□□□□ -0.97
CD44-227ENST00000528086 PIP4P2Q8N4L2 257 aa9.01□□□□□ -0.97
CD44-227ENST00000528086 UTP4Q969X6 686 aaKnown RBP9.01□□□□□ -0.97
CD44-227ENST00000528086 AMELYQ99218 206 aa9.01□□□□□ -0.97
CD44-227ENST00000528086 C1QTNF5Q9BXJ0 243 aa9.01□□□□□ -0.97
CD44-227ENST00000528086 NDEL1Q9GZM8 345 aa9.01□□□□□ -0.97
CD44-227ENST00000528086 REEP1Q9H902 201 aa9.01□□□□□ -0.97
CD44-227ENST00000528086 ELOVL3Q9HB03 270 aa9.01□□□□□ -0.97
CD44-227ENST00000528086 KRCC1Q9NPI7 259 aaPredicted RBP9.01□□□□□ -0.97
CD44-227ENST00000528086 PTTG3PQ9NZH4 202 aa9.01□□□□□ -0.97
CD44-227ENST00000528086 WIPI2Q9Y4P8 454 aa9.01□□□□□ -0.97
CD44-227ENST00000528086 COMMD3-BMI1R4GMX3 469 aa9.01□□□□□ -0.97
CD44-227ENST00000528086 DOCK11Q5JSL3 2073 aa9□□□□□ -0.97
CD44-227ENST00000528086 ARRDC5A6NEK1 342 aa9□□□□□ -0.97
CD44-227ENST00000528086 FAM183AA6NL82 134 aa9□□□□□ -0.97
CD44-227ENST00000528086 PPIHO43447 177 aaKnown RBP9□□□□□ -0.97
CD44-227ENST00000528086 FKBP6O75344 327 aa9□□□□□ -0.97
CD44-227ENST00000528086 ERCC1P07992 297 aaPredicted RBP9□□□□□ -0.97
CD44-227ENST00000528086 SELEP16581 610 aa9□□□□□ -0.97
CD44-227ENST00000528086 SPI1P17947 270 aa9□□□□□ -0.97
CD44-227ENST00000528086 GCH1P30793 250 aa9□□□□□ -0.97
CD44-227ENST00000528086 GUCA1AP43080 201 aaPredicted RBP9□□□□□ -0.97
CD44-227ENST00000528086 SLC25A1P53007 311 aa9□□□□□ -0.97
CD44-227ENST00000528086 SELENOVP59797 346 aa9□□□□□ -0.97
CD44-227ENST00000528086 MVKQ03426 396 aa9□□□□□ -0.97
CD44-227ENST00000528086 SNAI3Q3KNW1 292 aa9□□□□□ -0.97
CD44-227ENST00000528086 CHRFAM7AQ494W8 412 aa9□□□□□ -0.97
CD44-227ENST00000528086 SLC36A3Q495N2 470 aa9□□□□□ -0.97
CD44-227ENST00000528086 OR5AS1Q8N127 324 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms