RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 CST1P01037 141 aa17.55■□□□□ 0.4
VPS28-206ENST00000526734 HLA-DQA2P01906 255 aa17.55■□□□□ 0.4
VPS28-206ENST00000526734 SLC3A1Q07837 685 aa17.55■□□□□ 0.4
VPS28-206ENST00000526734 PSG7Q13046 419 aa17.55■□□□□ 0.4
VPS28-206ENST00000526734 TRIP10Q15642 601 aa17.55■□□□□ 0.4
VPS28-206ENST00000526734 HFEQ30201 348 aa17.55■□□□□ 0.4
VPS28-206ENST00000526734 SLC35F1Q5T1Q4 408 aa17.55■□□□□ 0.4
VPS28-206ENST00000526734 USP51Q70EK9 711 aa17.55■□□□□ 0.4
VPS28-206ENST00000526734 OR10G2Q8NGC3 310 aa17.55■□□□□ 0.4
VPS28-206ENST00000526734 PTP4A1Q93096 173 aa17.55■□□□□ 0.4
VPS28-206ENST00000526734 TIMD4Q96H15 378 aa17.55■□□□□ 0.4
VPS28-206ENST00000526734 TSSK6Q9BXA6 273 aa17.55■□□□□ 0.4
VPS28-206ENST00000526734 PURGQ9UJV8 347 aaKnown RBP17.55■□□□□ 0.4
VPS28-206ENST00000526734 U3KQV3 271 aa17.55■□□□□ 0.4
VPS28-206ENST00000526734 YLPM1P49750 1951 aaKnown RBP17.54■□□□□ 0.4
VPS28-206ENST00000526734 ZSCAN5BA6NJL1 495 aa17.54■□□□□ 0.4
VPS28-206ENST00000526734 B4DSR2 109 aa17.54■□□□□ 0.4
VPS28-206ENST00000526734 SPRY3O43610 288 aa17.54■□□□□ 0.4
VPS28-206ENST00000526734 IFNGP01579 166 aa17.54■□□□□ 0.4
VPS28-206ENST00000526734 RAC2P15153 192 aa17.54■□□□□ 0.4
VPS28-206ENST00000526734 TNFSF4P23510 183 aa17.54■□□□□ 0.4
VPS28-206ENST00000526734 IGFBP5P24593 272 aa17.54■□□□□ 0.4
VPS28-206ENST00000526734 TSTQ16762 297 aaKnown RBP17.54■□□□□ 0.4
VPS28-206ENST00000526734 MEP1BQ16820 701 aa17.54■□□□□ 0.4
VPS28-206ENST00000526734 SLC18B1Q6NT16 456 aa17.54■□□□□ 0.4
VPS28-206ENST00000526734 FBXW12Q6X9E4 464 aa17.54■□□□□ 0.4
VPS28-206ENST00000526734 OR8D4Q8NGM9 314 aa17.54■□□□□ 0.4
VPS28-206ENST00000526734 CLDND2Q8NHS1 167 aa17.54■□□□□ 0.4
VPS28-206ENST00000526734 GIPC3Q8TF64 312 aa17.54■□□□□ 0.4
VPS28-206ENST00000526734 HAVCR1Q96D42 359 aa17.54■□□□□ 0.4
VPS28-206ENST00000526734 DDOQ99489 341 aa17.54■□□□□ 0.4
VPS28-206ENST00000526734 PLA2G12AQ9BZM1 189 aa17.54■□□□□ 0.4
VPS28-206ENST00000526734 VNN3Q9NY84 501 aa17.54■□□□□ 0.4
VPS28-206ENST00000526734 CYB5R1Q9UHQ9 305 aa17.54■□□□□ 0.4
VPS28-206ENST00000526734 STARD10Q9Y365 291 aa17.54■□□□□ 0.4
VPS28-206ENST00000526734 CDC14BO60729 498 aa17.53■□□□□ 0.4
VPS28-206ENST00000526734 GPANK1O95872 356 aa17.53■□□□□ 0.4
VPS28-206ENST00000526734 ZNF823P16415 610 aa17.53■□□□□ 0.4
VPS28-206ENST00000526734 BLVRAP53004 296 aa17.53■□□□□ 0.4
VPS28-206ENST00000526734 DVL1P1P54792 670 aaPredicted RBP17.53■□□□□ 0.4
VPS28-206ENST00000526734 CDK5R2Q13319 367 aa17.53■□□□□ 0.4
VPS28-206ENST00000526734 FLOT2Q14254 428 aa17.53■□□□□ 0.4
VPS28-206ENST00000526734 TMEM255AQ5JRV8 349 aa17.53■□□□□ 0.4
VPS28-206ENST00000526734 OTPQ5XKR4 325 aa17.53■□□□□ 0.4
VPS28-206ENST00000526734 ZSCAN2Q7Z7L9 614 aaPredicted RBP17.53■□□□□ 0.4
VPS28-206ENST00000526734 PROKR2Q8NFJ6 384 aa17.53■□□□□ 0.4
VPS28-206ENST00000526734 CANT1Q8WVQ1 401 aa17.53■□□□□ 0.4
VPS28-206ENST00000526734 GTF3AQ92664 365 aaKnown RBP17.53■□□□□ 0.4
VPS28-206ENST00000526734 RAB1CQ92928 201 aa17.53■□□□□ 0.4
VPS28-206ENST00000526734 PITX2Q99697 317 aa17.53■□□□□ 0.4
VPS28-206ENST00000526734 ATF6BQ99941 703 aa17.53■□□□□ 0.4
VPS28-206ENST00000526734 FN3KQ9H479 309 aa17.53■□□□□ 0.4
VPS28-206ENST00000526734 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP17.52■□□□□ 0.47e-7■■■■□ 20.7
VPS28-206ENST00000526734 GNGT2O14610 69 aa17.52■□□□□ 0.4
VPS28-206ENST00000526734 SURF4O15260 269 aa17.52■□□□□ 0.4
VPS28-206ENST00000526734 DNAJC8O75937 253 aaPredicted RBP17.52■□□□□ 0.4
VPS28-206ENST00000526734 IL2RGP31785 369 aa17.52■□□□□ 0.4
VPS28-206ENST00000526734 THBS2P35442 1172 aa17.52■□□□□ 0.4
VPS28-206ENST00000526734 GGT2P36268 569 aa17.52■□□□□ 0.4
VPS28-206ENST00000526734 SLC25A1P53007 311 aa17.52■□□□□ 0.4
VPS28-206ENST00000526734 PPP1R8Q12972 351 aaKnown RBP17.52■□□□□ 0.4
VPS28-206ENST00000526734 KRTAP27-1Q3LI81 207 aa17.52■□□□□ 0.4
VPS28-206ENST00000526734 SLC37A3Q8NCC5 494 aa17.52■□□□□ 0.4
VPS28-206ENST00000526734 TEX47Q8TBZ9 253 aa17.52■□□□□ 0.4
VPS28-206ENST00000526734 SLC7A6Q92536 515 aa17.52■□□□□ 0.4
VPS28-206ENST00000526734 SLC7A6OSQ96CW6 309 aaPredicted RBP17.52■□□□□ 0.4
VPS28-206ENST00000526734 CMBLQ96DG6 245 aa17.52■□□□□ 0.4
VPS28-206ENST00000526734 SOX7Q9BT81 388 aa17.52■□□□□ 0.4
VPS28-206ENST00000526734 RIIAD1A6NNX1 92 aa17.51■□□□□ 0.39
VPS28-206ENST00000526734 KIAA1324LA8MWY0 1029 aaPredicted RBP17.51■□□□□ 0.39
VPS28-206ENST00000526734 DBHP09172 617 aa17.51■□□□□ 0.39
VPS28-206ENST00000526734 ANPEPP15144 967 aa17.51■□□□□ 0.39
VPS28-206ENST00000526734 TNFRSF1AP19438 455 aa17.51■□□□□ 0.39
VPS28-206ENST00000526734 TNFAIP6P98066 277 aaPredicted RBP17.51■□□□□ 0.39
VPS28-206ENST00000526734 CCNIQ14094 377 aa17.51■□□□□ 0.39
VPS28-206ENST00000526734 FAM120AOSQ5T036 256 aa17.51■□□□□ 0.39
VPS28-206ENST00000526734 ZNF362Q5T0B9 420 aaPredicted RBP17.51■□□□□ 0.39
VPS28-206ENST00000526734 CORO6Q6QEF8 472 aa17.51■□□□□ 0.39
VPS28-206ENST00000526734 CFAP77Q6ZQR2 320 aa17.51■□□□□ 0.39
VPS28-206ENST00000526734 COLCA1Q6ZS62 124 aa17.51■□□□□ 0.39
VPS28-206ENST00000526734 PEG10Q86TG7 708 aaKnown RBP17.51■□□□□ 0.39
VPS28-206ENST00000526734 GLCCI1Q86VQ1 547 aa17.51■□□□□ 0.39
VPS28-206ENST00000526734 LINC00346Q8IVM7 164 aa17.51■□□□□ 0.39
VPS28-206ENST00000526734 CYB561A3Q8NBI2 242 aa17.51■□□□□ 0.39
VPS28-206ENST00000526734 RAB39BQ96DA2 213 aa17.51■□□□□ 0.39
VPS28-206ENST00000526734 FEVQ99581 238 aa17.51■□□□□ 0.39
VPS28-206ENST00000526734 RBM4Q9BWF3 364 aaKnown RBP17.51■□□□□ 0.39
VPS28-206ENST00000526734 C1QTNF5Q9BXJ0 243 aa17.51■□□□□ 0.39
VPS28-206ENST00000526734 MSL2Q9HCI7 577 aa17.51■□□□□ 0.39
VPS28-206ENST00000526734 MRPL22Q9NWU5 206 aaKnown RBP17.51■□□□□ 0.39
VPS28-206ENST00000526734 SOX14O95416 240 aa17.5■□□□□ 0.39
VPS28-206ENST00000526734 SELEP16581 610 aa17.5■□□□□ 0.39
VPS28-206ENST00000526734 ZNF3P17036 446 aa17.5■□□□□ 0.39
VPS28-206ENST00000526734 SRD5A1P18405 259 aa17.5■□□□□ 0.39
VPS28-206ENST00000526734 FMO3P31513 532 aa17.5■□□□□ 0.39
VPS28-206ENST00000526734 GRK5P34947 590 aa17.5■□□□□ 0.39
VPS28-206ENST00000526734 RASSF2P50749 326 aa17.5■□□□□ 0.39
VPS28-206ENST00000526734 CRMP1Q14194 572 aa17.5■□□□□ 0.39
VPS28-206ENST00000526734 SLC27A4Q6P1M0 643 aa17.5■□□□□ 0.39
VPS28-206ENST00000526734 SPATA24Q86W54 205 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms