RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 C12orf73Q69YU5 71 aa8.73□□□□□ -1.01
VPS28-204ENST00000526054 ZNF774Q6NX45 483 aa8.73□□□□□ -1.01
VPS28-204ENST00000526054 PLBD1Q6P4A8 553 aa8.73□□□□□ -1.01
VPS28-204ENST00000526054 ZNF584Q8IVC4 421 aa8.73□□□□□ -1.01
VPS28-204ENST00000526054 CPOQ8IVL8 374 aa8.73□□□□□ -1.01
VPS28-204ENST00000526054 NUP37Q8NFH4 326 aa8.73□□□□□ -1.01
VPS28-204ENST00000526054 GJC3Q8NFK1 279 aa8.73□□□□□ -1.01
VPS28-204ENST00000526054 OR51L1Q8NGJ5 315 aa8.73□□□□□ -1.01
VPS28-204ENST00000526054 OR2AJ1Q8NGZ0 328 aa8.73□□□□□ -1.01
VPS28-204ENST00000526054 AKR7LQ8NHP1 331 aa8.73□□□□□ -1.01
VPS28-204ENST00000526054 NRG4Q8WWG1 115 aa8.73□□□□□ -1.01
VPS28-204ENST00000526054 SORCS2Q96PQ0 1159 aa8.73□□□□□ -1.01
VPS28-204ENST00000526054 WNT5BQ9H1J7 359 aa8.73□□□□□ -1.01
VPS28-204ENST00000526054 OR51V1Q9H2C8 321 aa8.73□□□□□ -1.01
VPS28-204ENST00000526054 CHODLQ9H9P2 273 aa8.73□□□□□ -1.01
VPS28-204ENST00000526054 HINT3Q9NQE9 182 aaKnown RBP8.73□□□□□ -1.01
VPS28-204ENST00000526054 PLEK2Q9NYT0 353 aa8.73□□□□□ -1.01
VPS28-204ENST00000526054 KCNS2Q9ULS6 477 aa8.73□□□□□ -1.01
VPS28-204ENST00000526054 MALRD1Q5VYJ5 2156 aa8.72□□□□□ -1.01
VPS28-204ENST00000526054 TVP23AA6NH52 213 aa8.72□□□□□ -1.01
VPS28-204ENST00000526054 NDUFS8O00217 210 aa8.72□□□□□ -1.01
VPS28-204ENST00000526054 LMX1BO60663 402 aa8.72□□□□□ -1.01
VPS28-204ENST00000526054 GLCEO94923 617 aa8.72□□□□□ -1.01
VPS28-204ENST00000526054 SNAP29O95721 258 aa8.72□□□□□ -1.01
VPS28-204ENST00000526054 TFP02787 698 aa8.72□□□□□ -1.01
VPS28-204ENST00000526054 COX5BP10606 129 aa8.72□□□□□ -1.01
VPS28-204ENST00000526054 CLUP10909 449 aa8.72□□□□□ -1.01
VPS28-204ENST00000526054 ZNF35P13682 527 aa8.72□□□□□ -1.01
VPS28-204ENST00000526054 SRD5A1P18405 259 aa8.72□□□□□ -1.01
VPS28-204ENST00000526054 CCNOP22674 350 aa8.72□□□□□ -1.01
VPS28-204ENST00000526054 EPHA2P29317 976 aa8.72□□□□□ -1.01
VPS28-204ENST00000526054 NR4A2P43354 598 aa8.72□□□□□ -1.01
VPS28-204ENST00000526054 HTR5AP47898 357 aa8.72□□□□□ -1.01
VPS28-204ENST00000526054 ENTPD1P49961 510 aa8.72□□□□□ -1.01
VPS28-204ENST00000526054 RPS7P62081 194 aaKnown RBP8.72□□□□□ -1.01
VPS28-204ENST00000526054 SWI5Q1ZZU3 235 aa8.72□□□□□ -1.01
VPS28-204ENST00000526054 KLHL12Q53G59 568 aa8.72□□□□□ -1.01
VPS28-204ENST00000526054 SLC35D3Q5M8T2 416 aa8.72□□□□□ -1.01
VPS28-204ENST00000526054 LCN1P1Q5VSP4 162 aa8.72□□□□□ -1.01
VPS28-204ENST00000526054 OTPQ5XKR4 325 aa8.72□□□□□ -1.01
VPS28-204ENST00000526054 FAM166AQ6J272 317 aa8.72□□□□□ -1.01
VPS28-204ENST00000526054 KRT80Q6KB66 452 aa8.72□□□□□ -1.01
VPS28-204ENST00000526054 UNQ6126/PRO20091Q6UXV3 157 aa8.72□□□□□ -1.01
VPS28-204ENST00000526054 VASH1Q7L8A9 365 aaPredicted RBP8.72□□□□□ -1.01
VPS28-204ENST00000526054 PACRGLQ8N7B6 248 aa8.72□□□□□ -1.01
VPS28-204ENST00000526054 CPEB3Q8NE35 698 aaKnown RBP8.72□□□□□ -1.01
VPS28-204ENST00000526054 VRK1Q99986 396 aaPredicted RBP8.72□□□□□ -1.01
VPS28-204ENST00000526054 HCAR1Q9BXC0 346 aa8.72□□□□□ -1.01
VPS28-204ENST00000526054 HDHD2Q9H0R4 259 aa8.72□□□□□ -1.01
VPS28-204ENST00000526054 ZNF442Q9H7R0 627 aa8.72□□□□□ -1.01
VPS28-204ENST00000526054 MED20Q9H944 212 aa8.72□□□□□ -1.01
VPS28-204ENST00000526054 MYOZ1Q9NP98 299 aaPredicted RBP8.72□□□□□ -1.01
VPS28-204ENST00000526054 CA10Q9NS85 328 aa8.72□□□□□ -1.01
VPS28-204ENST00000526054 MRPL22Q9NWU5 206 aaKnown RBP8.72□□□□□ -1.01
VPS28-204ENST00000526054 EIF3KQ9UBQ5 218 aaKnown RBP8.72□□□□□ -1.01
VPS28-204ENST00000526054 ATPIF1Q9UII2 106 aa8.72□□□□□ -1.01
VPS28-204ENST00000526054 LHFPL6Q9Y693 200 aa8.72□□□□□ -1.01
VPS28-204ENST00000526054 COMMD3-BMI1R4GMX3 469 aa8.72□□□□□ -1.01
VPS28-204ENST00000526054 SVEP1Q4LDE5 3571 aa8.72□□□□□ -1.01
VPS28-204ENST00000526054 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.71□□□□□ -1.013e-7■■■■□ 19.9
VPS28-204ENST00000526054 C5orf49A4QMS7 147 aa8.71□□□□□ -1.02
VPS28-204ENST00000526054 VWC2LB2RUY7 222 aa8.71□□□□□ -1.02
VPS28-204ENST00000526054 RER1O15258 196 aa8.71□□□□□ -1.02
VPS28-204ENST00000526054 PRKYO43930 277 aa8.71□□□□□ -1.02
VPS28-204ENST00000526054 SPARCP09486 303 aa8.71□□□□□ -1.02
VPS28-204ENST00000526054 CCL2P13500 99 aa8.71□□□□□ -1.02
VPS28-204ENST00000526054 HNF1AP20823 631 aa8.71□□□□□ -1.02
VPS28-204ENST00000526054 NR4A1P22736 598 aa8.71□□□□□ -1.02
VPS28-204ENST00000526054 GSTT1P30711 240 aa8.71□□□□□ -1.02
VPS28-204ENST00000526054 GLRXP35754 106 aa8.71□□□□□ -1.02
VPS28-204ENST00000526054 GGT2P36268 569 aa8.71□□□□□ -1.02
VPS28-204ENST00000526054 SERPINF1P36955 418 aa8.71□□□□□ -1.02
VPS28-204ENST00000526054 CDC42P60953 191 aa8.71□□□□□ -1.02
VPS28-204ENST00000526054 HGFACQ04756 655 aa8.71□□□□□ -1.02
VPS28-204ENST00000526054 DBPQ10586 325 aaPredicted RBP8.71□□□□□ -1.02
VPS28-204ENST00000526054 MST1LQ2TV78 715 aa8.71□□□□□ -1.02
VPS28-204ENST00000526054 KRTAP24-1Q3LI83 254 aa8.71□□□□□ -1.02
VPS28-204ENST00000526054 ZIK1Q3SY52 487 aaPredicted RBP8.71□□□□□ -1.02
VPS28-204ENST00000526054 ELFN2Q5R3F8 820 aa8.71□□□□□ -1.02
VPS28-204ENST00000526054 LINC01590Q5TEZ4 76 aa8.71□□□□□ -1.02
VPS28-204ENST00000526054 SLC18B1Q6NT16 456 aa8.71□□□□□ -1.02
VPS28-204ENST00000526054 CORO6Q6QEF8 472 aa8.71□□□□□ -1.02
VPS28-204ENST00000526054 VHLLQ6RSH7 139 aa8.71□□□□□ -1.02
VPS28-204ENST00000526054 ARL9Q6T311 187 aa8.71□□□□□ -1.02
VPS28-204ENST00000526054 IL17RELQ6ZVW7 336 aa8.71□□□□□ -1.02
VPS28-204ENST00000526054 ERI1Q8IV48 349 aaKnown RBP8.71□□□□□ -1.02
VPS28-204ENST00000526054 LINC00346Q8IVM7 164 aa8.71□□□□□ -1.02
VPS28-204ENST00000526054 GID4Q8IVV7 300 aa8.71□□□□□ -1.02
VPS28-204ENST00000526054 TCEANCQ8N8B7 351 aa8.71□□□□□ -1.02
VPS28-204ENST00000526054 ZNF511Q8NB15 262 aa8.71□□□□□ -1.02
VPS28-204ENST00000526054 OR6N2Q8NGY6 317 aa8.71□□□□□ -1.02
VPS28-204ENST00000526054 OR1F12Q8NHA8 337 aa8.71□□□□□ -1.02
VPS28-204ENST00000526054 TMEM163Q8TC26 289 aa8.71□□□□□ -1.02
VPS28-204ENST00000526054 ZNRF4Q8WWF5 429 aa8.71□□□□□ -1.02
VPS28-204ENST00000526054 PTP4A1Q93096 173 aa8.71□□□□□ -1.02
VPS28-204ENST00000526054 POM121L2Q96KW2 1035 aa8.71□□□□□ -1.02
VPS28-204ENST00000526054 RDH12Q96NR8 316 aa8.71□□□□□ -1.02
VPS28-204ENST00000526054 INTS14Q96SY0 518 aa8.71□□□□□ -1.02
VPS28-204ENST00000526054 COQ7Q99807 217 aa8.71□□□□□ -1.02
VPS28-204ENST00000526054 SLC29A1Q99808 456 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms