RNA–Protein interactions for RNA: ENST00000523488.5

CSMD1-213, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 3,714 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-213ENST00000523488 ARHGAP11AQ6P4F7 1023 aa7.54□□□□□ -1.2
CSMD1-213ENST00000523488 MED25Q71SY5 747 aa7.54□□□□□ -1.2
CSMD1-213ENST00000523488 MTSS1LQ765P7 747 aa7.54□□□□□ -1.2
CSMD1-213ENST00000523488 TTC9BQ8N6N2 239 aa7.54□□□□□ -1.2
CSMD1-213ENST00000523488 ZNF676Q8N7Q3 588 aa7.54□□□□□ -1.2
CSMD1-213ENST00000523488 OR52E2Q8NGJ4 325 aa7.54□□□□□ -1.2
CSMD1-213ENST00000523488 GINS3Q9BRX5 216 aa7.54□□□□□ -1.2
CSMD1-213ENST00000523488 PADI3Q9ULW8 664 aa7.54□□□□□ -1.2
CSMD1-213ENST00000523488 GTF2A1LQ9UNN4 478 aa7.54□□□□□ -1.2
CSMD1-213ENST00000523488 MRPS33Q9Y291 106 aaKnown RBP7.54□□□□□ -1.2
CSMD1-213ENST00000523488 A0A1B0GVT2 93 aa7.54□□□□□ -1.2
CSMD1-213ENST00000523488 A0A1W2PPV9 198 aa7.54□□□□□ -1.2
CSMD1-213ENST00000523488 C1QTNF3-AMACRE9PGA6 284 aa7.54□□□□□ -1.2
CSMD1-213ENST00000523488 MASP2O00187 686 aa7.54□□□□□ -1.2
CSMD1-213ENST00000523488 GMFGO60234 142 aa7.54□□□□□ -1.2
CSMD1-213ENST00000523488 APBB3O95704 486 aa7.54□□□□□ -1.2
CSMD1-213ENST00000523488 SPTBP11277 2137 aa7.54□□□□□ -1.2
CSMD1-213ENST00000523488 LAMP2P13473 410 aa7.54□□□□□ -1.2
CSMD1-213ENST00000523488 ST6GAL1P15907 406 aa7.54□□□□□ -1.2
CSMD1-213ENST00000523488 ZNF28P17035 718 aa7.54□□□□□ -1.2
CSMD1-213ENST00000523488 S100A10P60903 97 aa7.54□□□□□ -1.2
CSMD1-213ENST00000523488 HNRNPKP61978 463 aaKnown RBP eCLIP7.54□□□□□ -1.2
CSMD1-213ENST00000523488 MEF2DQ14814 521 aa7.54□□□□□ -1.2
CSMD1-213ENST00000523488 RANBP3LQ86VV4 465 aaPredicted RBP7.54□□□□□ -1.2
CSMD1-213ENST00000523488 LHFPL1Q86WI0 220 aa7.54□□□□□ -1.2
CSMD1-213ENST00000523488 HOGA1Q86XE5 327 aa7.54□□□□□ -1.2
CSMD1-213ENST00000523488 NRSN1Q8IZ57 195 aa7.54□□□□□ -1.2
CSMD1-213ENST00000523488 NPEPL1Q8NDH3 523 aa7.54□□□□□ -1.2
CSMD1-213ENST00000523488 OR13C2Q8NGS9 318 aa7.54□□□□□ -1.2
CSMD1-213ENST00000523488 OR4K13Q8NH42 304 aa7.54□□□□□ -1.2
CSMD1-213ENST00000523488 OR5K2Q8NHB8 316 aa7.54□□□□□ -1.2
CSMD1-213ENST00000523488 TERB2Q8NHR7 220 aa7.54□□□□□ -1.2
CSMD1-213ENST00000523488 SLC41A2Q96JW4 573 aa7.54□□□□□ -1.2
CSMD1-213ENST00000523488 ZNF558Q96NG5 402 aa7.54□□□□□ -1.2
CSMD1-213ENST00000523488 OR2M4Q96R27 311 aa7.54□□□□□ -1.2
CSMD1-213ENST00000523488 DPEP2Q9H4A9 486 aa7.54□□□□□ -1.2
CSMD1-213ENST00000523488 PTGES2Q9H7Z7 377 aa7.54□□□□□ -1.2
CSMD1-213ENST00000523488 IKZF2Q9UKS7 526 aa7.54□□□□□ -1.2
CSMD1-213ENST00000523488 CEP350Q5VT06 3117 aa7.53□□□□□ -1.2
CSMD1-213ENST00000523488 ELOA3DA6NLF2 546 aaPredicted RBP7.53□□□□□ -1.2
CSMD1-213ENST00000523488 SLC17A2O00624 439 aa7.53□□□□□ -1.2
CSMD1-213ENST00000523488 TSPAN6O43657 245 aa7.53□□□□□ -1.2
CSMD1-213ENST00000523488 QDPRP09417 244 aa7.53□□□□□ -1.2
CSMD1-213ENST00000523488 RPL4P36578 427 aaKnown RBP7.53□□□□□ -1.2
CSMD1-213ENST00000523488 TAS2R38P59533 333 aa7.53□□□□□ -1.2
CSMD1-213ENST00000523488 SPEM2Q0P670 501 aa7.53□□□□□ -1.2
CSMD1-213ENST00000523488 ELOA3BQ3SY89 546 aa7.53□□□□□ -1.2
CSMD1-213ENST00000523488 GXYLT1Q4G148 440 aa7.53□□□□□ -1.2
CSMD1-213ENST00000523488 ZNF765Q7L2R6 523 aa7.53□□□□□ -1.2
CSMD1-213ENST00000523488 PPP1R3BQ86XI6 285 aa7.53□□□□□ -1.2
CSMD1-213ENST00000523488 ELOA3Q8NG57 546 aa7.53□□□□□ -1.2
CSMD1-213ENST00000523488 OR9A2Q8NGT5 310 aa7.53□□□□□ -1.2
CSMD1-213ENST00000523488 SCAMP4Q969E2 229 aa7.53□□□□□ -1.2
CSMD1-213ENST00000523488 NTNG2Q96CW9 530 aa7.53□□□□□ -1.2
CSMD1-213ENST00000523488 SCARF2Q96GP6 870 aaPredicted RBP7.53□□□□□ -1.2
CSMD1-213ENST00000523488 C16orf58Q96GQ5 468 aa7.53□□□□□ -1.2
CSMD1-213ENST00000523488 ZNF845Q96IR2 970 aaPredicted RBP7.53□□□□□ -1.2
CSMD1-213ENST00000523488 OR52A5Q9H2C5 316 aa7.53□□□□□ -1.2
CSMD1-213ENST00000523488 TAF9BQ9HBM6 251 aa7.53□□□□□ -1.2
CSMD1-213ENST00000523488 GSKIPQ9P0R6 139 aa7.53□□□□□ -1.2
CSMD1-213ENST00000523488 LRP4O75096 1905 aa7.53□□□□□ -1.2
CSMD1-213ENST00000523488 TRAV27A0A087WT01 109 aa7.53□□□□□ -1.2
CSMD1-213ENST00000523488 MANSC4A6NHS7 340 aaPredicted RBP7.53□□□□□ -1.2
CSMD1-213ENST00000523488 OR4C45A6NMZ5 311 aa7.53□□□□□ -1.2
CSMD1-213ENST00000523488 TMPRSS11DO60235 418 aa7.53□□□□□ -1.2
CSMD1-213ENST00000523488 SOX15O60248 233 aa7.53□□□□□ -1.2
CSMD1-213ENST00000523488 AGR2O95994 175 aa7.53□□□□□ -1.2
CSMD1-213ENST00000523488 DANCRP0C864 163 aa7.53□□□□□ -1.2
CSMD1-213ENST00000523488 OR8G3PP0DMU2 310 aa7.53□□□□□ -1.2
CSMD1-213ENST00000523488 EPHA8P29322 1005 aaPredicted RBP7.53□□□□□ -1.2
CSMD1-213ENST00000523488 SERPINF1P36955 418 aa7.53□□□□□ -1.2
CSMD1-213ENST00000523488 SSR2P43308 183 aa7.53□□□□□ -1.2
CSMD1-213ENST00000523488 RPP30P78346 268 aaKnown RBP7.53□□□□□ -1.2
CSMD1-213ENST00000523488 ZNF584Q8IVC4 421 aa7.53□□□□□ -1.2
CSMD1-213ENST00000523488 CCDC116Q8IYX3 515 aa7.53□□□□□ -1.2
CSMD1-213ENST00000523488 HSD17B11Q8NBQ5 300 aa7.53□□□□□ -1.2
CSMD1-213ENST00000523488 ZNF689Q96CS4 500 aaPredicted RBP7.53□□□□□ -1.2
CSMD1-213ENST00000523488 ZG16BQ96DA0 208 aa7.53□□□□□ -1.2
CSMD1-213ENST00000523488 BSCL2Q96G97 398 aaPredicted RBP7.53□□□□□ -1.2
CSMD1-213ENST00000523488 LMF1Q96S06 567 aa7.53□□□□□ -1.2
CSMD1-213ENST00000523488 RNF208Q9H0X6 261 aa7.53□□□□□ -1.2
CSMD1-213ENST00000523488 KCNK6Q9Y257 313 aa7.53□□□□□ -1.2
CSMD1-213ENST00000523488 GOLT1BQ9Y3E0 138 aa7.53□□□□□ -1.2
CSMD1-213ENST00000523488 URGCP-MRPS24S4R325 110 aa7.53□□□□□ -1.2
CSMD1-213ENST00000523488 A0A1B0GV50 99 aa7.53□□□□□ -1.2
CSMD1-213ENST00000523488 OR5H15A6NDH6 313 aa7.53□□□□□ -1.2
CSMD1-213ENST00000523488 MYADML2A6NDP7 307 aa7.53□□□□□ -1.2
CSMD1-213ENST00000523488 ZNF860A6NHJ4 632 aa7.53□□□□□ -1.2
CSMD1-213ENST00000523488 OR5H1A6NKK0 313 aa7.53□□□□□ -1.2
CSMD1-213ENST00000523488 FOXI3A8MTJ6 420 aaPredicted RBP7.53□□□□□ -1.2
CSMD1-213ENST00000523488 GRM6O15303 877 aa7.53□□□□□ -1.2
CSMD1-213ENST00000523488 FGF7P21781 194 aa7.53□□□□□ -1.2
CSMD1-213ENST00000523488 HTR2CP28335 458 aa7.53□□□□□ -1.2
CSMD1-213ENST00000523488 AFF3P51826 1226 aaKnown RBP7.53□□□□□ -1.2
CSMD1-213ENST00000523488 MRPS11P82912 194 aaKnown RBP7.53□□□□□ -1.2
CSMD1-213ENST00000523488 HIKESHIQ53FT3 197 aa7.53□□□□□ -1.2
CSMD1-213ENST00000523488 OR2T2Q6IF00 324 aa7.53□□□□□ -1.2
CSMD1-213ENST00000523488 ZNF836Q6ZNA1 936 aa7.53□□□□□ -1.2
CSMD1-213ENST00000523488 OR7D2Q96RA2 312 aa7.53□□□□□ -1.2
CSMD1-213ENST00000523488 SLC6A7Q99884 636 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms