RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 WFIKKN1Q96NZ8 548 aa10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 RNF2Q99496 336 aa10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 MAP1LC3CQ9BXW4 147 aa10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 HSPB8Q9UJY1 196 aa10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 DDNO94850 711 aaPredicted RBP10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 KIR2DL3P43628 341 aa10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 IER5LQ5T953 404 aa10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 FAHD2BQ6P2I3 314 aaPredicted RBP10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 CYHR1Q6ZMK1 362 aa10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 BVESQ8NE79 360 aa10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 OR52L2PQ8NGH6 319 aa10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 FAHD2AQ96GK7 314 aa10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 WRAP73Q9P2S5 460 aaPredicted RBP10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 LPAR3Q9UBY5 353 aa10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 SLC23A1Q9UHI7 598 aa10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 WNT6Q9Y6F9 365 aa10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 TMEM265A0A087WTH1 108 aa10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 NSG1A0A0A6YYJ2 146 aa10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 EIF4E2O60573 245 aaKnown RBP10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 GCGP01275 180 aa10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 SLC25A6P12236 298 aa10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 FGF9P31371 208 aaPredicted RBP10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 PIGAP37287 484 aa10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 IL13RA2Q14627 380 aa10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 RPEL1Q2QD12 228 aa10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 ABI3BPQ7Z7G0 1075 aa10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 NLGN4YQ8NFZ3 816 aaPredicted RBP10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 OR4S1Q8NGB4 309 aa10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 STACQ99469 402 aa10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 ATP5SQ99766 215 aa10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 BARX1Q9HBU1 254 aaPredicted RBP10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 APOBEC3BQ9UH17 382 aaKnown RBP10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 J3KTA2 159 aa10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 DEGS1O15121 323 aa10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 VAMP5O95183 116 aa10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 F2P00734 622 aa10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 ACAA1P09110 424 aaPredicted RBP10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 DIO1P49895 249 aa10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 RAB38P57729 211 aa10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 HHEXQ03014 270 aa10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 C17orf67Q0P5P2 114 aa10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 TMEM81Q6P7N7 255 aa10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 LHFPL2Q6ZUX7 228 aa10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 AAED1Q7RTV5 226 aa10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 FAM174AQ8TBP5 190 aa10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 BCL2L2Q92843 193 aaPredicted RBP10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 MUCL1Q96DR8 90 aa10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 ADGRL4Q9HBW9 690 aa10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 MANBALQ9NQG1 85 aa10.28□□□□□ -0.76
LIMCH1-217ENST00000512946 SLC5A10A0PJK1 596 aa10.27□□□□□ -0.76
LIMCH1-217ENST00000512946 UNCXA6NJT0 531 aa10.27□□□□□ -0.76
LIMCH1-217ENST00000512946 SSSCA1O60232 199 aa10.27□□□□□ -0.76
LIMCH1-217ENST00000512946 FURINP09958 794 aa10.27□□□□□ -0.76
LIMCH1-217ENST00000512946 AOAHP28039 575 aa10.27□□□□□ -0.76
LIMCH1-217ENST00000512946 BSGP35613 385 aa10.27□□□□□ -0.76
LIMCH1-217ENST00000512946 PABPC1L2AQ5JQF8 200 aa10.27□□□□□ -0.76
LIMCH1-217ENST00000512946 GDF7Q7Z4P5 450 aa10.27□□□□□ -0.76
LIMCH1-217ENST00000512946 ARHGAP9Q9BRR9 750 aa10.27□□□□□ -0.76
LIMCH1-217ENST00000512946 PARP12Q9H0J9 701 aaKnown RBP10.27□□□□□ -0.76
LIMCH1-217ENST00000512946 UQCC1Q9NVA1 299 aa10.27□□□□□ -0.76
LIMCH1-217ENST00000512946 CDC42EP3Q9UKI2 254 aa10.27□□□□□ -0.76
LIMCH1-217ENST00000512946 ZNF816-ZNF321PA0A0X1KG74 233 aa10.27□□□□□ -0.77
LIMCH1-217ENST00000512946 A0A1B0GWA3 101 aa10.27□□□□□ -0.77
LIMCH1-217ENST00000512946 SULT1A3P0DMM9 295 aa10.27□□□□□ -0.77
LIMCH1-217ENST00000512946 SULT1A4P0DMN0 295 aa10.27□□□□□ -0.77
LIMCH1-217ENST00000512946 FPR2P25090 351 aa10.27□□□□□ -0.77
LIMCH1-217ENST00000512946 PPP2CAP67775 309 aa10.27□□□□□ -0.77
LIMCH1-217ENST00000512946 PLA1AQ53H76 456 aa10.27□□□□□ -0.77
LIMCH1-217ENST00000512946 MANEAQ5SRI9 462 aa10.27□□□□□ -0.77
LIMCH1-217ENST00000512946 CMTM4Q8IZR5 234 aa10.27□□□□□ -0.77
LIMCH1-217ENST00000512946 OR2M3Q8NG83 312 aa10.27□□□□□ -0.77
LIMCH1-217ENST00000512946 OR5K2Q8NHB8 316 aa10.27□□□□□ -0.77
LIMCH1-217ENST00000512946 NIPSNAP1Q9BPW8 284 aa10.27□□□□□ -0.77
LIMCH1-217ENST00000512946 MARVELD1Q9BSK0 173 aa10.27□□□□□ -0.77
LIMCH1-217ENST00000512946 CLEC2DQ9UHP7 191 aa10.27□□□□□ -0.77
LIMCH1-217ENST00000512946 MMP24Q9Y5R2 645 aa10.27□□□□□ -0.77
LIMCH1-217ENST00000512946 SPATA31D1Q6ZQQ2 1576 aa10.27□□□□□ -0.77
LIMCH1-217ENST00000512946 TCF21O43680 179 aa10.27□□□□□ -0.77
LIMCH1-217ENST00000512946 PRDX1Q06830 199 aaKnown RBP10.27□□□□□ -0.77
LIMCH1-217ENST00000512946 GPNMBQ14956 572 aa10.27□□□□□ -0.77
LIMCH1-217ENST00000512946 C18orf21Q32NC0 220 aaPredicted RBP10.27□□□□□ -0.77
LIMCH1-217ENST00000512946 TTC32Q5I0X7 151 aa10.27□□□□□ -0.77
LIMCH1-217ENST00000512946 LIPNQ5VXI9 398 aa10.27□□□□□ -0.77
LIMCH1-217ENST00000512946 MAML2Q8IZL2 1156 aaPredicted RBP10.27□□□□□ -0.77
LIMCH1-217ENST00000512946 METTL27Q8N6F8 245 aaPredicted RBP10.27□□□□□ -0.77
LIMCH1-217ENST00000512946 THAP3Q8WTV1 239 aaPredicted RBP10.27□□□□□ -0.77
LIMCH1-217ENST00000512946 RTN4IP1Q8WWV3 396 aaPredicted RBP10.27□□□□□ -0.77
LIMCH1-217ENST00000512946 S1PR3Q99500 378 aa10.27□□□□□ -0.77
LIMCH1-217ENST00000512946 OR51M1Q9H341 326 aa10.27□□□□□ -0.77
LIMCH1-217ENST00000512946 PLP1P60201 277 aa10.27□□□□□ -0.77
LIMCH1-217ENST00000512946 NEIL1Q96FI4 390 aaPredicted RBP10.27□□□□□ -0.77
LIMCH1-217ENST00000512946 NECTIN4Q96NY8 510 aa10.27□□□□□ -0.77
LIMCH1-217ENST00000512946 TRAF4Q9BUZ4 470 aaPredicted RBP10.27□□□□□ -0.77
LIMCH1-217ENST00000512946 RTL8AQ9BWD3 113 aa10.27□□□□□ -0.77
LIMCH1-217ENST00000512946 FITM1A5D6W6 292 aa10.26□□□□□ -0.77
LIMCH1-217ENST00000512946 LRRC30A6NM36 301 aa10.26□□□□□ -0.77
LIMCH1-217ENST00000512946 HTRA3P83110 453 aa10.26□□□□□ -0.77
LIMCH1-217ENST00000512946 INPP5JQ15735 1006 aaPredicted RBP10.26□□□□□ -0.77
LIMCH1-217ENST00000512946 RNF175Q8N4F7 328 aa10.26□□□□□ -0.77
LIMCH1-217ENST00000512946 UBALD1Q8TB05 177 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms