RNA–Protein interactions for RNA: ENST00000507597.5

USP53-203, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 3

Gene USP53, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-203ENST00000507597 ZNF35P13682 527 aa17.4■□□□□ 0.38
USP53-203ENST00000507597 DCKP27707 260 aa17.4■□□□□ 0.38
USP53-203ENST00000507597 RPS27P42677 84 aaKnown RBP17.4■□□□□ 0.38
USP53-203ENST00000507597 SELENOVP59797 346 aa17.4■□□□□ 0.38
USP53-203ENST00000507597 ADAM5Q6NVV9 412 aa17.4■□□□□ 0.38
USP53-203ENST00000507597 PLEKHG7Q6ZR37 379 aa17.4■□□□□ 0.38
USP53-203ENST00000507597 KCTD20Q7Z5Y7 419 aa17.4■□□□□ 0.38
USP53-203ENST00000507597 TMEM200AQ86VY9 491 aa17.4■□□□□ 0.38
USP53-203ENST00000507597 NUP37Q8NFH4 326 aa17.4■□□□□ 0.38
USP53-203ENST00000507597 SNX33Q8WV41 574 aa17.4■□□□□ 0.38
USP53-203ENST00000507597 MAP6Q96JE9 813 aa17.4■□□□□ 0.38
USP53-203ENST00000507597 C4orf45Q96LM5 186 aa17.4■□□□□ 0.38
USP53-203ENST00000507597 KCNJ15Q99712 375 aa17.4■□□□□ 0.38
USP53-203ENST00000507597 ASH1LQ9NR48 2969 aaKnown RBP17.4■□□□□ 0.38
USP53-203ENST00000507597 FAIMQ9NVQ4 179 aa17.4■□□□□ 0.38
USP53-203ENST00000507597 TBCCD1Q9NVR7 557 aa17.4■□□□□ 0.38
USP53-203ENST00000507597 CNOT2Q9NZN8 540 aaKnown RBP17.4■□□□□ 0.38
USP53-203ENST00000507597 ANKHD1Q8IWZ3 2542 aaKnown RBP17.4■□□□□ 0.38
USP53-203ENST00000507597 F5H5K5 113 aa17.39■□□□□ 0.37
USP53-203ENST00000507597 FAM20BO75063 409 aa17.39■□□□□ 0.37
USP53-203ENST00000507597 ABHD16AO95870 558 aa17.39■□□□□ 0.37
USP53-203ENST00000507597 KRT8P05787 483 aa17.39■□□□□ 0.37
USP53-203ENST00000507597 DCTDP32321 178 aa17.39■□□□□ 0.37
USP53-203ENST00000507597 RIDAP52758 137 aaKnown RBP17.39■□□□□ 0.37
USP53-203ENST00000507597 C6orf141Q5SZD1 244 aa17.39■□□□□ 0.37
USP53-203ENST00000507597 ZNF322Q6U7Q0 402 aaPredicted RBP17.39■□□□□ 0.37
USP53-203ENST00000507597 DRAM2Q6UX65 266 aa17.39■□□□□ 0.37
USP53-203ENST00000507597 ZNF704Q6ZNC4 412 aaPredicted RBP17.39■□□□□ 0.37
USP53-203ENST00000507597 FAM220AQ7Z4H9 259 aa17.39■□□□□ 0.37
USP53-203ENST00000507597 ZNF679Q8IYX0 411 aa17.39■□□□□ 0.37
USP53-203ENST00000507597 BPIFB6Q8NFQ5 453 aa17.39■□□□□ 0.37
USP53-203ENST00000507597 LGALS12Q96DT0 336 aa17.39■□□□□ 0.37
USP53-203ENST00000507597 TMEM204Q9BSN7 226 aa17.39■□□□□ 0.37
USP53-203ENST00000507597 CLEC4MQ9H2X3 399 aaPredicted RBP17.39■□□□□ 0.37
USP53-203ENST00000507597 AMBNQ9NP70 447 aa17.39■□□□□ 0.37
USP53-203ENST00000507597 AASSQ9UDR5 926 aa17.39■□□□□ 0.37
USP53-203ENST00000507597 IKZF2Q9UKS7 526 aa17.39■□□□□ 0.37
USP53-203ENST00000507597 GRIP1Q9Y3R0 1128 aa17.39■□□□□ 0.37
USP53-203ENST00000507597 M0R135 149 aa17.38■□□□□ 0.37
USP53-203ENST00000507597 CCDC159P0C7I6 412 aa17.38■□□□□ 0.37
USP53-203ENST00000507597 PIPP12273 146 aaPredicted RBP17.38■□□□□ 0.37
USP53-203ENST00000507597 MYL12AP19105 171 aa17.38■□□□□ 0.37
USP53-203ENST00000507597 NR4A1P22736 598 aa17.38■□□□□ 0.37
USP53-203ENST00000507597 UCP2P55851 309 aa17.38■□□□□ 0.37
USP53-203ENST00000507597 ACTA2P62736 377 aa17.38■□□□□ 0.37
USP53-203ENST00000507597 ACTG2P63267 376 aa17.38■□□□□ 0.37
USP53-203ENST00000507597 RBM48Q5RL73 367 aaKnown RBP17.38■□□□□ 0.37
USP53-203ENST00000507597 ZNF544Q6NX49 715 aa17.38■□□□□ 0.37
USP53-203ENST00000507597 STX19Q8N4C7 294 aa17.38■□□□□ 0.37
USP53-203ENST00000507597 ZNF283Q8N7M2 679 aa17.38■□□□□ 0.37
USP53-203ENST00000507597 ZNF540Q8NDQ6 660 aa17.38■□□□□ 0.37
USP53-203ENST00000507597 HAVCR2Q8TDQ0 301 aa17.38■□□□□ 0.37
USP53-203ENST00000507597 MYDGFQ969H8 173 aa17.38■□□□□ 0.37
USP53-203ENST00000507597 ZNF799Q96GE5 643 aa17.38■□□□□ 0.37
USP53-203ENST00000507597 FGF20Q9NP95 211 aaPredicted RBP17.38■□□□□ 0.37
USP53-203ENST00000507597 PNRC2Q9NPJ4 139 aaKnown RBP17.38■□□□□ 0.37
USP53-203ENST00000507597 FBXO9Q9UK97 447 aaPredicted RBP17.38■□□□□ 0.37
USP53-203ENST00000507597 LOC100509620A0A075B734 347 aa17.37■□□□□ 0.37
USP53-203ENST00000507597 SULT1C4O75897 302 aa17.37■□□□□ 0.37
USP53-203ENST00000507597 GLRXP35754 106 aa17.37■□□□□ 0.37
USP53-203ENST00000507597 OPRL1P41146 370 aa17.37■□□□□ 0.37
USP53-203ENST00000507597 SLC6A9P48067 706 aa17.37■□□□□ 0.37
USP53-203ENST00000507597 ROM1Q03395 351 aa17.37■□□□□ 0.37
USP53-203ENST00000507597 MALLQ13021 153 aa17.37■□□□□ 0.37
USP53-203ENST00000507597 SMN1Q16637 294 aaKnown RBP17.37■□□□□ 0.37
USP53-203ENST00000507597 MOGQ16653 247 aa17.37■□□□□ 0.37
USP53-203ENST00000507597 ZNF829Q3KNS6 432 aaPredicted RBP17.37■□□□□ 0.37
USP53-203ENST00000507597 ZNF672Q499Z4 452 aaPredicted RBP17.37■□□□□ 0.37
USP53-203ENST00000507597 FBXW5Q969U6 566 aa17.37■□□□□ 0.37
USP53-203ENST00000507597 APOBEC3DQ96AK3 386 aaPredicted RBP17.37■□□□□ 0.37
USP53-203ENST00000507597 TMEM80Q96HE8 168 aa17.37■□□□□ 0.37
USP53-203ENST00000507597 OR8B4Q96RC9 309 aa17.37■□□□□ 0.37
USP53-203ENST00000507597 CISD1Q9NZ45 108 aaKnown RBP17.37■□□□□ 0.37
USP53-203ENST00000507597 EXOSC1Q9Y3B2 195 aaKnown RBP17.37■□□□□ 0.37
USP53-203ENST00000507597 ICE1Q9Y2F5 2266 aa17.37■□□□□ 0.37
USP53-203ENST00000507597 DOPEY2Q9Y3R5 2298 aa17.36■□□□□ 0.37
USP53-203ENST00000507597 A0A1W2PQL4 384 aaPredicted RBP17.36■□□□□ 0.37
USP53-203ENST00000507597 ACOD1A6NK06 481 aa17.36■□□□□ 0.37
USP53-203ENST00000507597 ATP6V1G2-DDX39BF2Z307 99 aa17.36■□□□□ 0.37
USP53-203ENST00000507597 H3BSA7 217 aa17.36■□□□□ 0.37
USP53-203ENST00000507597 ICMTO60725 284 aa17.36■□□□□ 0.37
USP53-203ENST00000507597 LCKP06239 509 aa17.36■□□□□ 0.37
USP53-203ENST00000507597 CCL2P13500 99 aa17.36■□□□□ 0.37
USP53-203ENST00000507597 CALCRP30988 508 aa17.36■□□□□ 0.37
USP53-203ENST00000507597 HCCSP53701 268 aa17.36■□□□□ 0.37
USP53-203ENST00000507597 MRPL28Q13084 256 aaKnown RBP17.36■□□□□ 0.37
USP53-203ENST00000507597 SNTB2Q13425 540 aaKnown RBP17.36■□□□□ 0.37
USP53-203ENST00000507597 SPATC1Q76KD6 591 aa17.36■□□□□ 0.37
USP53-203ENST00000507597 OR52I1Q8NGK6 324 aa17.36■□□□□ 0.37
USP53-203ENST00000507597 AKAP1Q92667 903 aaKnown RBP eCLIP17.36■□□□□ 0.37
USP53-203ENST00000507597 TBX5Q99593 518 aa17.36■□□□□ 0.37
USP53-203ENST00000507597 YTHDF1Q9BYJ9 559 aaKnown RBP17.36■□□□□ 0.37
USP53-203ENST00000507597 ZNF442Q9H7R0 627 aa17.36■□□□□ 0.37
USP53-203ENST00000507597 CMAHPQ9Y471 501 aa17.36■□□□□ 0.37
USP53-203ENST00000507597 USP9YO00507 2555 aaPredicted RBP17.36■□□□□ 0.37
USP53-203ENST00000507597 METTL15A6NJ78 407 aa17.35■□□□□ 0.37
USP53-203ENST00000507597 SHISA9B4DS77 424 aa17.35■□□□□ 0.37
USP53-203ENST00000507597 HS3ST1O14792 307 aa17.35■□□□□ 0.37
USP53-203ENST00000507597 SIAH2O43255 324 aa17.35■□□□□ 0.37
USP53-203ENST00000507597 APOL3O95236 402 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms