RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 CRISP1P54107 249 aa13.65□□□□□ -0.22
LIME1-209ENST00000494776 CDK5Q00535 292 aa13.65□□□□□ -0.22
LIME1-209ENST00000494776 ECH1Q13011 328 aa13.65□□□□□ -0.22
LIME1-209ENST00000494776 MBNL2Q5VZF2 373 aaKnown RBP13.65□□□□□ -0.22
LIME1-209ENST00000494776 TMEM236Q5W0B7 351 aa13.65□□□□□ -0.22
LIME1-209ENST00000494776 LYPD4Q6UWN0 246 aa13.65□□□□□ -0.22
LIME1-209ENST00000494776 CFAP77Q6ZQR2 320 aa13.65□□□□□ -0.22
LIME1-209ENST00000494776 ZNF511Q8NB15 262 aa13.65□□□□□ -0.22
LIME1-209ENST00000494776 OR5L1Q8NGL2 311 aa13.65□□□□□ -0.22
LIME1-209ENST00000494776 C10orf105Q8TEF2 133 aa13.65□□□□□ -0.22
LIME1-209ENST00000494776 IPCEF1Q8WWN9 437 aaPredicted RBP13.65□□□□□ -0.22
LIME1-209ENST00000494776 CENPNQ96H22 339 aaPredicted RBP13.65□□□□□ -0.22
LIME1-209ENST00000494776 ATF6BQ99941 703 aa13.65□□□□□ -0.22
LIME1-209ENST00000494776 PIMREGQ9BSJ6 248 aa13.65□□□□□ -0.22
LIME1-209ENST00000494776 WDR76Q9H967 626 aa13.65□□□□□ -0.22
LIME1-209ENST00000494776 HINT3Q9NQE9 182 aaKnown RBP13.65□□□□□ -0.22
LIME1-209ENST00000494776 COMMD3-BMI1R4GMX3 469 aa13.65□□□□□ -0.22
LIME1-209ENST00000494776 LOC390937A0A1W2PQ73 354 aa13.64□□□□□ -0.23
LIME1-209ENST00000494776 F5H5K5 113 aa13.64□□□□□ -0.23
LIME1-209ENST00000494776 H3BSA7 217 aa13.64□□□□□ -0.23
LIME1-209ENST00000494776 ZNF593O00488 134 aaPredicted RBP13.64□□□□□ -0.23
LIME1-209ENST00000494776 SURF4O15260 269 aa13.64□□□□□ -0.23
LIME1-209ENST00000494776 TPD52L2O43399 206 aaKnown RBP13.64□□□□□ -0.23
LIME1-209ENST00000494776 ICMTO60725 284 aa13.64□□□□□ -0.23
LIME1-209ENST00000494776 TUBG1P23258 451 aa13.64□□□□□ -0.23
LIME1-209ENST00000494776 MPV17P39210 176 aa13.64□□□□□ -0.23
LIME1-209ENST00000494776 RPS27P42677 84 aaKnown RBP13.64□□□□□ -0.23
LIME1-209ENST00000494776 RGS6P49758 472 aa13.64□□□□□ -0.23
LIME1-209ENST00000494776 ENTPD1P49961 510 aa13.64□□□□□ -0.23
LIME1-209ENST00000494776 ESRRGP62508 458 aa13.64□□□□□ -0.23
LIME1-209ENST00000494776 TAF13Q15543 124 aa13.64□□□□□ -0.23
LIME1-209ENST00000494776 SNAPC1Q16533 368 aa13.64□□□□□ -0.23
LIME1-209ENST00000494776 KLHL12Q53G59 568 aa13.64□□□□□ -0.23
LIME1-209ENST00000494776 ZFP1Q6P2D0 407 aa13.64□□□□□ -0.23
LIME1-209ENST00000494776 PLBD1Q6P4A8 553 aa13.64□□□□□ -0.23
LIME1-209ENST00000494776 PARP8Q8N3A8 854 aa13.64□□□□□ -0.23
LIME1-209ENST00000494776 UBASH3BQ8TF42 649 aa13.64□□□□□ -0.23
LIME1-209ENST00000494776 SLC25A19Q9HC21 320 aa13.64□□□□□ -0.23
LIME1-209ENST00000494776 TUBG2Q9NRH3 451 aa13.64□□□□□ -0.23
LIME1-209ENST00000494776 TVP23BQ9NYZ1 205 aa13.64□□□□□ -0.23
LIME1-209ENST00000494776 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.64□□□□□ -0.23
LIME1-209ENST00000494776 ENOPH1Q9UHY7 261 aa13.64□□□□□ -0.23
LIME1-209ENST00000494776 STARD10Q9Y365 291 aa13.64□□□□□ -0.23
LIME1-209ENST00000494776 VPS13CQ709C8 3753 aa13.64□□□□□ -0.23
LIME1-209ENST00000494776 ARFGEF3Q5TH69 2177 aa13.64□□□□□ -0.23
LIME1-209ENST00000494776 SAC3D1A6NKF1 404 aa13.63□□□□□ -0.23
LIME1-209ENST00000494776 C17orf100A8MU93 164 aa13.63□□□□□ -0.23
LIME1-209ENST00000494776 NDUFS8O00217 210 aa13.63□□□□□ -0.23
LIME1-209ENST00000494776 TIMM8AO60220 97 aaPredicted RBP13.63□□□□□ -0.23
LIME1-209ENST00000494776 MITFO75030 526 aaPredicted RBP13.63□□□□□ -0.23
LIME1-209ENST00000494776 GLCEO94923 617 aa13.63□□□□□ -0.23
LIME1-209ENST00000494776 GSTT1P30711 240 aa13.63□□□□□ -0.23
LIME1-209ENST00000494776 ZNF81P51508 661 aa13.63□□□□□ -0.23
LIME1-209ENST00000494776 RPS7P62081 194 aaKnown RBP13.63□□□□□ -0.23
LIME1-209ENST00000494776 PTGES3Q15185 160 aaKnown RBP13.63□□□□□ -0.23
LIME1-209ENST00000494776 Q71RC1 249 aaPredicted RBP13.63□□□□□ -0.23
LIME1-209ENST00000494776 DCXRQ7Z4W1 244 aa13.63□□□□□ -0.23
LIME1-209ENST00000494776 ERI1Q8IV48 349 aaKnown RBP13.63□□□□□ -0.23
LIME1-209ENST00000494776 CPOQ8IVL8 374 aa13.63□□□□□ -0.23
LIME1-209ENST00000494776 ZNF540Q8NDQ6 660 aa13.63□□□□□ -0.23
LIME1-209ENST00000494776 PTP4A1Q93096 173 aa13.63□□□□□ -0.23
LIME1-209ENST00000494776 SPTSSAQ969W0 71 aa13.63□□□□□ -0.23
LIME1-209ENST00000494776 APOBEC3DQ96AK3 386 aaPredicted RBP13.63□□□□□ -0.23
LIME1-209ENST00000494776 MAP6Q96JE9 813 aa13.63□□□□□ -0.23
LIME1-209ENST00000494776 INTS14Q96SY0 518 aa13.63□□□□□ -0.23
LIME1-209ENST00000494776 HCAR1Q9BXC0 346 aa13.63□□□□□ -0.23
LIME1-209ENST00000494776 PRRG3Q9BZD7 231 aa13.63□□□□□ -0.23
LIME1-209ENST00000494776 GABARAPL1Q9H0R8 117 aa13.63□□□□□ -0.23
LIME1-209ENST00000494776 CENPMQ9NSP4 180 aa13.63□□□□□ -0.23
LIME1-209ENST00000494776 DECR2Q9NUI1 292 aa13.63□□□□□ -0.23
LIME1-209ENST00000494776 OAZ3Q9UMX2 235 aa13.63□□□□□ -0.23
LIME1-209ENST00000494776 J3QW42 95 aa13.62□□□□□ -0.23
LIME1-209ENST00000494776 LY6G6DO95868 133 aa13.62□□□□□ -0.23
LIME1-209ENST00000494776 IGFBP5P24593 272 aa13.62□□□□□ -0.23
LIME1-209ENST00000494776 LIPAP38571 399 aa13.62□□□□□ -0.23
LIME1-209ENST00000494776 TPTEP56180 551 aa13.62□□□□□ -0.23
LIME1-209ENST00000494776 TSTQ16762 297 aaKnown RBP13.62□□□□□ -0.23
LIME1-209ENST00000494776 PCGF3Q3KNV8 242 aa13.62□□□□□ -0.23
LIME1-209ENST00000494776 KDM4DQ6B0I6 523 aa13.62□□□□□ -0.23
LIME1-209ENST00000494776 CXXC5Q7LFL8 322 aaKnown RBP13.62□□□□□ -0.23
LIME1-209ENST00000494776 OR6N2Q8NGY6 317 aa13.62□□□□□ -0.23
LIME1-209ENST00000494776 CMBLQ96DG6 245 aa13.62□□□□□ -0.23
LIME1-209ENST00000494776 COPS4Q9BT78 406 aa13.62□□□□□ -0.23
LIME1-209ENST00000494776 POFUT1Q9H488 388 aa13.62□□□□□ -0.23
LIME1-209ENST00000494776 CYSLTR2Q9NS75 346 aa13.62□□□□□ -0.23
LIME1-209ENST00000494776 PTTG3PQ9NZH4 202 aa13.62□□□□□ -0.23
LIME1-209ENST00000494776 ACANP16112 2415 aa13.61□□□□□ -0.23
LIME1-209ENST00000494776 LYNX1G3V0Z9 82 aa13.61□□□□□ -0.23
LIME1-209ENST00000494776 SPRY3O43610 288 aa13.61□□□□□ -0.23
LIME1-209ENST00000494776 HPXP02790 462 aa13.61□□□□□ -0.23
LIME1-209ENST00000494776 LCATP04180 440 aa13.61□□□□□ -0.23
LIME1-209ENST00000494776 LYNX1P0DP58 116 aa13.61□□□□□ -0.23
LIME1-209ENST00000494776 MAGEB1P43366 347 aa13.61□□□□□ -0.23
LIME1-209ENST00000494776 SLC6A9P48067 706 aa13.61□□□□□ -0.23
LIME1-209ENST00000494776 CCL8P80075 99 aa13.61□□□□□ -0.23
LIME1-209ENST00000494776 PSG7Q13046 419 aa13.61□□□□□ -0.23
LIME1-209ENST00000494776 EIF2B1Q14232 305 aaKnown RBP13.61□□□□□ -0.23
LIME1-209ENST00000494776 GGTLC2Q14390 218 aa13.61□□□□□ -0.23
LIME1-209ENST00000494776 ZMAT1Q5H9K5 638 aa13.61□□□□□ -0.23
LIME1-209ENST00000494776 TEX30Q5JUR7 227 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms