RNA–Protein interactions for RNA: ENST00000493727.5

UPF3A-210, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 937 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-210ENST00000493727 TVP23AA6NH52 213 aa10.58□□□□□ -0.72
UPF3A-210ENST00000493727 TRIM64BA6NI03 449 aa10.58□□□□□ -0.72
UPF3A-210ENST00000493727 SLC1A7O00341 560 aa10.58□□□□□ -0.72
UPF3A-210ENST00000493727 XPNPEP2O43895 674 aa10.58□□□□□ -0.72
UPF3A-210ENST00000493727 GPANK1O95872 356 aa10.58□□□□□ -0.72
UPF3A-210ENST00000493727 DBTP11182 482 aaKnown RBP10.58□□□□□ -0.72
UPF3A-210ENST00000493727 PAX1P15863 534 aa10.58□□□□□ -0.72
UPF3A-210ENST00000493727 ZNF823P16415 610 aa10.58□□□□□ -0.72
UPF3A-210ENST00000493727 SLC2A5P22732 501 aa10.58□□□□□ -0.72
UPF3A-210ENST00000493727 LAP3P28838 519 aa10.58□□□□□ -0.72
UPF3A-210ENST00000493727 NAA10P41227 235 aaPredicted RBP10.58□□□□□ -0.72
UPF3A-210ENST00000493727 CSNK2BP67870 215 aa10.58□□□□□ -0.72
UPF3A-210ENST00000493727 SGCAQ16586 387 aa10.58□□□□□ -0.72
UPF3A-210ENST00000493727 RBM48Q5RL73 367 aaKnown RBP10.58□□□□□ -0.72
UPF3A-210ENST00000493727 B3GLCTQ6Y288 498 aa10.58□□□□□ -0.72
UPF3A-210ENST00000493727 ZNF704Q6ZNC4 412 aaPredicted RBP10.58□□□□□ -0.72
UPF3A-210ENST00000493727 ERI1Q8IV48 349 aaKnown RBP10.58□□□□□ -0.72
UPF3A-210ENST00000493727 ZNF540Q8NDQ6 660 aa10.58□□□□□ -0.72
UPF3A-210ENST00000493727 STEAP2Q8NFT2 490 aa10.58□□□□□ -0.72
UPF3A-210ENST00000493727 OR51G2Q8NGK0 314 aa10.58□□□□□ -0.72
UPF3A-210ENST00000493727 INTS14Q96SY0 518 aa10.58□□□□□ -0.72
UPF3A-210ENST00000493727 TEAD3Q99594 435 aa10.58□□□□□ -0.72
UPF3A-210ENST00000493727 ACTR6Q9GZN1 396 aa10.58□□□□□ -0.72
UPF3A-210ENST00000493727 NGBQ9NPG2 151 aa10.58□□□□□ -0.72
UPF3A-210ENST00000493727 PCDHB10Q9UN67 800 aa10.58□□□□□ -0.72
UPF3A-210ENST00000493727 MYRFQ9Y2G1 1151 aa10.58□□□□□ -0.72
UPF3A-210ENST00000493727 ZNF281Q9Y2X9 895 aa10.58□□□□□ -0.72
UPF3A-210ENST00000493727 TPRKBQ9Y3C4 175 aa10.58□□□□□ -0.72
UPF3A-210ENST00000493727 PCDHGB5Q9Y5G0 923 aa10.58□□□□□ -0.72
UPF3A-210ENST00000493727 CIB4A0PJX0 185 aa10.57□□□□□ -0.72
UPF3A-210ENST00000493727 EFCAB10A6NFE3 127 aa10.57□□□□□ -0.72
UPF3A-210ENST00000493727 ZNF99A8MXY4 864 aaPredicted RBP10.57□□□□□ -0.72
UPF3A-210ENST00000493727 RPL36A-HNRNPH2H7BZ11 118 aa10.57□□□□□ -0.72
UPF3A-210ENST00000493727 SELENOFO60613 162 aa10.57□□□□□ -0.72
UPF3A-210ENST00000493727 SEC14L2O76054 403 aa10.57□□□□□ -0.72
UPF3A-210ENST00000493727 APOL3O95236 402 aa10.57□□□□□ -0.72
UPF3A-210ENST00000493727 FARS2O95363 451 aaKnown RBP10.57□□□□□ -0.72
UPF3A-210ENST00000493727 THBDP07204 575 aa10.57□□□□□ -0.72
UPF3A-210ENST00000493727 CCDC159P0C7I6 412 aa10.57□□□□□ -0.72
UPF3A-210ENST00000493727 B4GALT1P15291 398 aa10.57□□□□□ -0.72
UPF3A-210ENST00000493727 NPR2P20594 1047 aa10.57□□□□□ -0.72
UPF3A-210ENST00000493727 MSR1P21757 451 aa10.57□□□□□ -0.72
UPF3A-210ENST00000493727 EEF1B2P24534 225 aaKnown RBP10.57□□□□□ -0.72
UPF3A-210ENST00000493727 MPGP29372 298 aa10.57□□□□□ -0.72
UPF3A-210ENST00000493727 CDAP32320 146 aa10.57□□□□□ -0.72
UPF3A-210ENST00000493727 PTH2RP49190 550 aa10.57□□□□□ -0.72
UPF3A-210ENST00000493727 ZNF133P52736 654 aaPredicted RBP10.57□□□□□ -0.72
UPF3A-210ENST00000493727 CHN2P52757 468 aa10.57□□□□□ -0.72
UPF3A-210ENST00000493727 SH3BGRP55822 239 aaPredicted RBP10.57□□□□□ -0.72
UPF3A-210ENST00000493727 CXCR4P61073 352 aa10.57□□□□□ -0.72
UPF3A-210ENST00000493727 TGFBR3Q03167 851 aa10.57□□□□□ -0.72
UPF3A-210ENST00000493727 STK11Q15831 433 aa10.57□□□□□ -0.72
UPF3A-210ENST00000493727 KLHL22Q53GT1 634 aa10.57□□□□□ -0.72
UPF3A-210ENST00000493727 ZNF813Q6ZN06 617 aa10.57□□□□□ -0.72
UPF3A-210ENST00000493727 Q6ZT83 130 aa10.57□□□□□ -0.72
UPF3A-210ENST00000493727 AHSA2Q719I0 299 aa10.57□□□□□ -0.72
UPF3A-210ENST00000493727 LINGO2Q7L985 606 aa10.57□□□□□ -0.72
UPF3A-210ENST00000493727 STX19Q8N4C7 294 aa10.57□□□□□ -0.72
UPF3A-210ENST00000493727 ZNF611Q8N823 705 aa10.57□□□□□ -0.72
UPF3A-210ENST00000493727 OR6N2Q8NGY6 317 aa10.57□□□□□ -0.72
UPF3A-210ENST00000493727 C11orf40Q8WZ69 217 aa10.57□□□□□ -0.72
UPF3A-210ENST00000493727 KISS1RQ969F8 398 aaPredicted RBP10.57□□□□□ -0.72
UPF3A-210ENST00000493727 FOXB1Q99853 325 aa10.57□□□□□ -0.72
UPF3A-210ENST00000493727 CDADC1Q9BWV3 514 aa10.57□□□□□ -0.72
UPF3A-210ENST00000493727 PTGES3LE9PB15 166 aa10.56□□□□□ -0.72
UPF3A-210ENST00000493727 HS3ST1O14792 307 aa10.56□□□□□ -0.72
UPF3A-210ENST00000493727 SMAD7O15105 426 aaKnown RBP10.56□□□□□ -0.72
UPF3A-210ENST00000493727 TNFAIP8O95379 198 aa10.56□□□□□ -0.72
UPF3A-210ENST00000493727 FADS2O95864 444 aaKnown RBP10.56□□□□□ -0.72
UPF3A-210ENST00000493727 SPARCP09486 303 aa10.56□□□□□ -0.72
UPF3A-210ENST00000493727 GAAP10253 952 aa10.56□□□□□ -0.72
UPF3A-210ENST00000493727 CAPZA2P47755 286 aa10.56□□□□□ -0.72
UPF3A-210ENST00000493727 ENTPD1P49961 510 aa10.56□□□□□ -0.72
UPF3A-210ENST00000493727 ARF1P84077 181 aaKnown RBP10.56□□□□□ -0.72
UPF3A-210ENST00000493727 HSF2Q03933 536 aa10.56□□□□□ -0.72
UPF3A-210ENST00000493727 RAB40BQ12829 278 aa10.56□□□□□ -0.72
UPF3A-210ENST00000493727 GGTLC2Q14390 218 aa10.56□□□□□ -0.72
UPF3A-210ENST00000493727 MEP1BQ16820 701 aa10.56□□□□□ -0.72
UPF3A-210ENST00000493727 LINC01590Q5TEZ4 76 aa10.56□□□□□ -0.72
UPF3A-210ENST00000493727 OTPQ5XKR4 325 aa10.56□□□□□ -0.72
UPF3A-210ENST00000493727 LAIR2Q6ISS4 152 aa10.56□□□□□ -0.72
UPF3A-210ENST00000493727 KLHL24Q6TFL4 600 aa10.56□□□□□ -0.72
UPF3A-210ENST00000493727 UGT2A3Q6UWM9 527 aa10.56□□□□□ -0.72
UPF3A-210ENST00000493727 SHFQ7M4L6 423 aa10.56□□□□□ -0.72
UPF3A-210ENST00000493727 SSX8Q7RTT4 187 aa10.56□□□□□ -0.72
UPF3A-210ENST00000493727 SLC26A10Q8NG04 563 aa10.56□□□□□ -0.72
UPF3A-210ENST00000493727 OR10H4Q8NGA5 316 aa10.56□□□□□ -0.72
UPF3A-210ENST00000493727 ZNRF4Q8WWF5 429 aa10.56□□□□□ -0.72
UPF3A-210ENST00000493727 IPCEF1Q8WWN9 437 aaPredicted RBP10.56□□□□□ -0.72
UPF3A-210ENST00000493727 MYDGFQ969H8 173 aa10.56□□□□□ -0.72
UPF3A-210ENST00000493727 TMEM204Q9BSN7 226 aa10.56□□□□□ -0.72
UPF3A-210ENST00000493727 COPS4Q9BT78 406 aa10.56□□□□□ -0.72
UPF3A-210ENST00000493727 YTHDF1Q9BYJ9 559 aaKnown RBP10.56□□□□□ -0.72
UPF3A-210ENST00000493727 CCDC90BQ9GZT6 254 aa10.56□□□□□ -0.72
UPF3A-210ENST00000493727 KCNN2Q9H2S1 579 aa10.56□□□□□ -0.72
UPF3A-210ENST00000493727 NELFAQ9H3P2 528 aa10.56□□□□□ -0.72
UPF3A-210ENST00000493727 EMC7Q9NPA0 242 aa10.56□□□□□ -0.72
UPF3A-210ENST00000493727 POLE4Q9NR33 117 aa10.56□□□□□ -0.72
UPF3A-210ENST00000493727 PLCXD1Q9NUJ7 323 aa10.56□□□□□ -0.72
UPF3A-210ENST00000493727 ZNF701Q9NV72 531 aaPredicted RBP10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms