RNA–Protein interactions for RNA: ENST00000490689.3

SHOX2-205, Transcript of short stature homeobox 2, humanhuman

TSL 5

Gene SHOX2, Length 4,184 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-205ENST00000490689 RSC1A1Q92681 617 aa11.61□□□□□ -0.55
SHOX2-205ENST00000490689 ATOH1Q92858 354 aaPredicted RBP11.61□□□□□ -0.55
SHOX2-205ENST00000490689 KLHDC7BQ96G42 594 aa11.61□□□□□ -0.55
SHOX2-205ENST00000490689 ABHD6Q9BV23 337 aa11.61□□□□□ -0.55
SHOX2-205ENST00000490689 SVILO95425 2214 aa11.61□□□□□ -0.55
SHOX2-205ENST00000490689 DOCK4Q8N1I0 1966 aa11.61□□□□□ -0.55
SHOX2-205ENST00000490689 CCDC85CA6NKD9 419 aa11.6□□□□□ -0.55
SHOX2-205ENST00000490689 IDH3GP51553 393 aaPredicted RBP11.6□□□□□ -0.55
SHOX2-205ENST00000490689 AFF3P51826 1226 aaKnown RBP11.6□□□□□ -0.55
SHOX2-205ENST00000490689 C4orf17Q53FE4 359 aa11.6□□□□□ -0.55
SHOX2-205ENST00000490689 TMEM217Q8N7C4 229 aa11.6□□□□□ -0.55
SHOX2-205ENST00000490689 SLC30A7Q8NEW0 376 aa11.6□□□□□ -0.55
SHOX2-205ENST00000490689 OR51A2Q8NGJ7 313 aa11.6□□□□□ -0.55
SHOX2-205ENST00000490689 OR5M8Q8NGP6 311 aa11.6□□□□□ -0.55
SHOX2-205ENST00000490689 C4orf45Q96LM5 186 aa11.6□□□□□ -0.55
SHOX2-205ENST00000490689 GFOD1Q9NXC2 390 aa11.6□□□□□ -0.55
SHOX2-205ENST00000490689 DHCR7Q9UBM7 475 aaKnown RBP11.6□□□□□ -0.55
SHOX2-205ENST00000490689 ZNF646O15015 1829 aaPredicted RBP11.6□□□□□ -0.55
SHOX2-205ENST00000490689 A0A087WUJ7 227 aa11.6□□□□□ -0.55
SHOX2-205ENST00000490689 TCRBV21S2A2A0A5A6 115 aa11.6□□□□□ -0.55
SHOX2-205ENST00000490689 XRCC2O43543 280 aa11.6□□□□□ -0.55
SHOX2-205ENST00000490689 NUDT21O43809 227 aaKnown RBP11.6□□□□□ -0.55
SHOX2-205ENST00000490689 GP1BAP07359 652 aa11.6□□□□□ -0.55
SHOX2-205ENST00000490689 CBLN3Q6UW01 205 aa11.6□□□□□ -0.55
SHOX2-205ENST00000490689 CLEC9AQ6UXN8 241 aa11.6□□□□□ -0.55
SHOX2-205ENST00000490689 FBXW12Q6X9E4 464 aa11.6□□□□□ -0.55
SHOX2-205ENST00000490689 BATF2Q8N1L9 274 aa11.6□□□□□ -0.55
SHOX2-205ENST00000490689 NPEPL1Q8NDH3 523 aa11.6□□□□□ -0.55
SHOX2-205ENST00000490689 RBM24Q9BX46 236 aaKnown RBP11.6□□□□□ -0.55
SHOX2-205ENST00000490689 UQCC1Q9NVA1 299 aa11.6□□□□□ -0.55
SHOX2-205ENST00000490689 DNAJB12Q9NXW2 375 aaKnown RBP11.6□□□□□ -0.55
SHOX2-205ENST00000490689 RASL12Q9NYN1 266 aa11.6□□□□□ -0.55
SHOX2-205ENST00000490689 PLXNA1Q9UIW2 1896 aa11.6□□□□□ -0.55
SHOX2-205ENST00000490689 TMED7-TICAM2A0A0A6YYA0 188 aa11.6□□□□□ -0.55
SHOX2-205ENST00000490689 C4orf51C9J302 202 aa11.6□□□□□ -0.55
SHOX2-205ENST00000490689 HCRTR1O43613 425 aa11.6□□□□□ -0.55
SHOX2-205ENST00000490689 RAD51DO75771 328 aa11.6□□□□□ -0.55
SHOX2-205ENST00000490689 THY1P04216 161 aa11.6□□□□□ -0.55
SHOX2-205ENST00000490689 THEGLP0DJG4 465 aa11.6□□□□□ -0.55
SHOX2-205ENST00000490689 PTAFRP25105 342 aa11.6□□□□□ -0.55
SHOX2-205ENST00000490689 SLC6A8P48029 635 aa11.6□□□□□ -0.55
SHOX2-205ENST00000490689 PJVKQ0ZLH3 352 aa11.6□□□□□ -0.55
SHOX2-205ENST00000490689 C9orf152Q5JTZ5 239 aa11.6□□□□□ -0.55
SHOX2-205ENST00000490689 HIST2H3AQ71DI3 136 aa11.6□□□□□ -0.55
SHOX2-205ENST00000490689 ZNF681Q96N22 645 aa11.6□□□□□ -0.55
SHOX2-205ENST00000490689 SSX3Q99909 188 aa11.6□□□□□ -0.55
SHOX2-205ENST00000490689 SHARPINQ9H0F6 387 aa11.6□□□□□ -0.55
SHOX2-205ENST00000490689 MED29Q9NX70 200 aa11.6□□□□□ -0.55
SHOX2-205ENST00000490689 ANKRD36A6QL64 1941 aa11.6□□□□□ -0.55
SHOX2-205ENST00000490689 IGKV1-8A0A0C4DH67 115 aa11.6□□□□□ -0.55
SHOX2-205ENST00000490689 A0A0G2JK05 382 aa11.6□□□□□ -0.55
SHOX2-205ENST00000490689 GALR3O60755 368 aaPredicted RBP11.6□□□□□ -0.55
SHOX2-205ENST00000490689 ARG1P05089 322 aa11.6□□□□□ -0.55
SHOX2-205ENST00000490689 S100A8P05109 93 aa11.6□□□□□ -0.55
SHOX2-205ENST00000490689 TAGLN2P37802 199 aaKnown RBP11.6□□□□□ -0.55
SHOX2-205ENST00000490689 ACTBL2Q562R1 376 aa11.6□□□□□ -0.55
SHOX2-205ENST00000490689 FAM69BQ5VUD6 431 aa11.6□□□□□ -0.55
SHOX2-205ENST00000490689 OR9K2Q8NGE7 335 aa11.6□□□□□ -0.55
SHOX2-205ENST00000490689 OR51E1Q8TCB6 317 aa11.6□□□□□ -0.55
SHOX2-205ENST00000490689 TOE1Q96GM8 510 aaKnown RBP11.6□□□□□ -0.55
SHOX2-205ENST00000490689 CMTM3Q96MX0 182 aa11.6□□□□□ -0.55
SHOX2-205ENST00000490689 ZNF160Q9HCG1 818 aa11.6□□□□□ -0.55
SHOX2-205ENST00000490689 PPP4R1LQ9P1A2 415 aa11.6□□□□□ -0.55
SHOX2-205ENST00000490689 MED12Q93074 2177 aa11.6□□□□□ -0.55
SHOX2-205ENST00000490689 OR6C76A6NM76 312 aa11.59□□□□□ -0.55
SHOX2-205ENST00000490689 ABCD4O14678 606 aa11.59□□□□□ -0.55
SHOX2-205ENST00000490689 ST6GAL1P15907 406 aa11.59□□□□□ -0.55
SHOX2-205ENST00000490689 SERTAD2Q14140 314 aa11.59□□□□□ -0.55
SHOX2-205ENST00000490689 INPP5JQ15735 1006 aaPredicted RBP11.59□□□□□ -0.55
SHOX2-205ENST00000490689 AGBL4Q5VU57 503 aa11.59□□□□□ -0.55
SHOX2-205ENST00000490689 TMEM229BQ8NBD8 167 aa11.59□□□□□ -0.55
SHOX2-205ENST00000490689 OR5B2Q96R09 309 aa11.59□□□□□ -0.55
SHOX2-205ENST00000490689 FAM86C1Q9NVL1 165 aa11.59□□□□□ -0.55
SHOX2-205ENST00000490689 HAO2Q9NYQ3 351 aa11.59□□□□□ -0.55
SHOX2-205ENST00000490689 KPTNQ9Y664 436 aa11.59□□□□□ -0.55
SHOX2-205ENST00000490689 TRAV36DV7A0A075B6V5 113 aa11.59□□□□□ -0.55
SHOX2-205ENST00000490689 OR2C1O95371 312 aa11.59□□□□□ -0.55
SHOX2-205ENST00000490689 IFNA4P05014 189 aa11.59□□□□□ -0.55
SHOX2-205ENST00000490689 ZNF43P17038 809 aa11.59□□□□□ -0.55
SHOX2-205ENST00000490689 RPL12P30050 165 aaKnown RBP11.59□□□□□ -0.55
SHOX2-205ENST00000490689 ASCL1P50553 236 aa11.59□□□□□ -0.55
SHOX2-205ENST00000490689 BIDP55957 195 aa11.59□□□□□ -0.55
SHOX2-205ENST00000490689 RPL27P61353 136 aaKnown RBP11.59□□□□□ -0.55
SHOX2-205ENST00000490689 SCGB1C1Q8TD33 95 aa11.59□□□□□ -0.55
SHOX2-205ENST00000490689 SECTM1Q8WVN6 248 aa11.59□□□□□ -0.55
SHOX2-205ENST00000490689 MAP3K3Q99759 626 aa11.59□□□□□ -0.55
SHOX2-205ENST00000490689 SEMA6CQ9H3T2 930 aa11.59□□□□□ -0.55
SHOX2-205ENST00000490689 C11orf49Q9H6J7 331 aa11.59□□□□□ -0.55
SHOX2-205ENST00000490689 LYRM4Q9HD34 91 aa11.59□□□□□ -0.55
SHOX2-205ENST00000490689 MIOXQ9UGB7 285 aa11.59□□□□□ -0.55
SHOX2-205ENST00000490689 KLHDC2Q9Y2U9 406 aa11.59□□□□□ -0.55
SHOX2-205ENST00000490689 CACNA1DQ01668 2161 aa11.59□□□□□ -0.55
SHOX2-205ENST00000490689 SIP14410 1827 aa11.59□□□□□ -0.55
SHOX2-205ENST00000490689 C9orf170A2RU37 121 aa11.59□□□□□ -0.55
SHOX2-205ENST00000490689 LILRB5O75023 590 aa11.59□□□□□ -0.55
SHOX2-205ENST00000490689 MPZL1O95297 269 aa11.59□□□□□ -0.55
SHOX2-205ENST00000490689 ITGB2P05107 769 aa11.59□□□□□ -0.55
SHOX2-205ENST00000490689 NCMAPQ5T1S8 102 aa11.59□□□□□ -0.55
SHOX2-205ENST00000490689 OGFOD3Q6PK18 319 aa11.59□□□□□ -0.55
SHOX2-205ENST00000490689 UEVLDQ8IX04 471 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms