RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 AKAIN1P0CW23 69 aa10.86□□□□□ -0.67
PTPRF-212ENST00000477970 PRSS3P35030 304 aa10.86□□□□□ -0.67
PTPRF-212ENST00000477970 TSPAN7P41732 249 aa10.86□□□□□ -0.67
PTPRF-212ENST00000477970 CLRN1P58418 232 aa10.86□□□□□ -0.67
PTPRF-212ENST00000477970 KLHL24Q6TFL4 600 aa10.86□□□□□ -0.67
PTPRF-212ENST00000477970 FOXL2NBQ6ZUU3 175 aa10.86□□□□□ -0.67
PTPRF-212ENST00000477970 HIST2H2ABQ8IUE6 130 aaPredicted RBP10.86□□□□□ -0.67
PTPRF-212ENST00000477970 TMEM229BQ8NBD8 167 aa10.86□□□□□ -0.67
PTPRF-212ENST00000477970 OR2Y1Q8NGV0 311 aa10.86□□□□□ -0.67
PTPRF-212ENST00000477970 PAQR8Q8TEZ7 354 aa10.86□□□□□ -0.67
PTPRF-212ENST00000477970 ZNF431Q8TF32 576 aaPredicted RBP10.86□□□□□ -0.67
PTPRF-212ENST00000477970 IQCJ-SCHIP1C9J366 451 aaPredicted RBP10.86□□□□□ -0.67
PTPRF-212ENST00000477970 SCGNO76038 276 aa10.86□□□□□ -0.67
PTPRF-212ENST00000477970 ALX3O95076 343 aa10.86□□□□□ -0.67
PTPRF-212ENST00000477970 TTRP02766 147 aa10.86□□□□□ -0.67
PTPRF-212ENST00000477970 ZNF28P17035 718 aa10.86□□□□□ -0.67
PTPRF-212ENST00000477970 VEGFCP49767 419 aa10.86□□□□□ -0.67
PTPRF-212ENST00000477970 GSK3AP49840 483 aa10.86□□□□□ -0.67
PTPRF-212ENST00000477970 PSMA6P60900 246 aaKnown RBP10.86□□□□□ -0.67
PTPRF-212ENST00000477970 H3F3AP84243 136 aa10.86□□□□□ -0.67
PTPRF-212ENST00000477970 ZNF813Q6ZN06 617 aa10.86□□□□□ -0.67
PTPRF-212ENST00000477970 CLEC1AQ8NC01 280 aa10.86□□□□□ -0.67
PTPRF-212ENST00000477970 OR10S1Q8NGN2 331 aa10.86□□□□□ -0.67
PTPRF-212ENST00000477970 ALX4Q9H161 411 aaPredicted RBP10.86□□□□□ -0.67
PTPRF-212ENST00000477970 MRPL15Q9P015 296 aaKnown RBP10.86□□□□□ -0.67
PTPRF-212ENST00000477970 HSPB11Q9Y547 144 aa10.86□□□□□ -0.67
PTPRF-212ENST00000477970 SHISA8B8ZZ34 492 aa10.85□□□□□ -0.67
PTPRF-212ENST00000477970 ZNF878C9JN71 531 aa10.85□□□□□ -0.67
PTPRF-212ENST00000477970 SMLR1H3BR10 107 aa10.85□□□□□ -0.67
PTPRF-212ENST00000477970 ARPC1BO15143 372 aaKnown RBP10.85□□□□□ -0.67
PTPRF-212ENST00000477970 SSNA1O43805 119 aa10.85□□□□□ -0.67
PTPRF-212ENST00000477970 LPLP06858 475 aa10.85□□□□□ -0.67
PTPRF-212ENST00000477970 TPOP07202 933 aa10.85□□□□□ -0.67
PTPRF-212ENST00000477970 ACSM4P0C7M7 580 aa10.85□□□□□ -0.67
PTPRF-212ENST00000477970 CCL1P22362 96 aa10.85□□□□□ -0.67
PTPRF-212ENST00000477970 CTSSP25774 331 aa10.85□□□□□ -0.67
PTPRF-212ENST00000477970 PCGF3Q3KNV8 242 aa10.85□□□□□ -0.67
PTPRF-212ENST00000477970 SLC36A1Q7Z2H8 476 aa10.85□□□□□ -0.67
PTPRF-212ENST00000477970 ZSCAN2Q7Z7L9 614 aaPredicted RBP10.85□□□□□ -0.67
PTPRF-212ENST00000477970 LINC00346Q8IVM7 164 aa10.85□□□□□ -0.67
PTPRF-212ENST00000477970 PBOV1Q9GZY1 135 aa10.85□□□□□ -0.67
PTPRF-212ENST00000477970 MYOZ1Q9NP98 299 aaPredicted RBP10.85□□□□□ -0.67
PTPRF-212ENST00000477970 GTF2A1LQ9UNN4 478 aa10.85□□□□□ -0.67
PTPRF-212ENST00000477970 LHFPL6Q9Y693 200 aa10.85□□□□□ -0.67
PTPRF-212ENST00000477970 GON4LQ3T8J9 2241 aa10.85□□□□□ -0.67
PTPRF-212ENST00000477970 LNP1A1A4G5 178 aa10.85□□□□□ -0.67
PTPRF-212ENST00000477970 AGRPO00253 132 aa10.85□□□□□ -0.67
PTPRF-212ENST00000477970 CFIP05156 583 aa10.85□□□□□ -0.67
PTPRF-212ENST00000477970 GIPP09681 153 aaPredicted RBP10.85□□□□□ -0.67
PTPRF-212ENST00000477970 DSCR4P56555 118 aaPredicted RBP10.85□□□□□ -0.67
PTPRF-212ENST00000477970 GALK2Q01415 458 aa10.85□□□□□ -0.67
PTPRF-212ENST00000477970 TRIM61Q5EBN2 209 aa10.85□□□□□ -0.67
PTPRF-212ENST00000477970 RAB12Q6IQ22 244 aa10.85□□□□□ -0.67
PTPRF-212ENST00000477970 LRFN4Q6PJG9 635 aa10.85□□□□□ -0.67
PTPRF-212ENST00000477970 TMPPEQ6ZT21 453 aa10.85□□□□□ -0.67
PTPRF-212ENST00000477970 PLPP7Q8NBV4 271 aa10.85□□□□□ -0.67
PTPRF-212ENST00000477970 OR4C16Q8NGL9 310 aa10.85□□□□□ -0.67
PTPRF-212ENST00000477970 MS4A3Q96HJ5 214 aa10.85□□□□□ -0.67
PTPRF-212ENST00000477970 TMEM41AQ96HV5 264 aa10.85□□□□□ -0.67
PTPRF-212ENST00000477970 OR10A4Q9H209 315 aa10.85□□□□□ -0.67
PTPRF-212ENST00000477970 MGAT4AQ9UM21 535 aa10.85□□□□□ -0.67
PTPRF-212ENST00000477970 MRPS18BQ9Y676 258 aaKnown RBP10.85□□□□□ -0.67
PTPRF-212ENST00000477970 CREBL2O60519 120 aaPredicted RBP10.84□□□□□ -0.67
PTPRF-212ENST00000477970 OR2A4O95047 310 aa10.84□□□□□ -0.67
PTPRF-212ENST00000477970 MPZP25189 248 aa10.84□□□□□ -0.67
PTPRF-212ENST00000477970 GLYATL3Q5SZD4 288 aa10.84□□□□□ -0.67
PTPRF-212ENST00000477970 C10orf128Q5T292 105 aa10.84□□□□□ -0.67
PTPRF-212ENST00000477970 OTPQ5XKR4 325 aa10.84□□□□□ -0.67
PTPRF-212ENST00000477970 OR5B2Q96R09 309 aa10.84□□□□□ -0.67
PTPRF-212ENST00000477970 OR2A7Q96R45 310 aa10.84□□□□□ -0.67
PTPRF-212ENST00000477970 METTL17Q9H7H0 456 aaPredicted RBP10.84□□□□□ -0.67
PTPRF-212ENST00000477970 AKIRIN1Q9H9L7 192 aaPredicted RBP10.84□□□□□ -0.67
PTPRF-212ENST00000477970 TMEM9BQ9NQ34 198 aa10.84□□□□□ -0.67
PTPRF-212ENST00000477970 GDF2Q9UK05 429 aaPredicted RBP10.84□□□□□ -0.67
PTPRF-212ENST00000477970 FLVCR2Q9UPI3 526 aa10.84□□□□□ -0.67
PTPRF-212ENST00000477970 HS3ST3B1Q9Y662 390 aa10.84□□□□□ -0.67
PTPRF-212ENST00000477970 SEC16AO15027 2179 aa10.84□□□□□ -0.67
PTPRF-212ENST00000477970 ZNF292O60281 2723 aa10.84□□□□□ -0.67
PTPRF-212ENST00000477970 TRAV18A0A075B6X5 111 aa10.84□□□□□ -0.67
PTPRF-212ENST00000477970 G3V3Q6 166 aa10.84□□□□□ -0.67
PTPRF-212ENST00000477970 CDX4O14627 284 aaPredicted RBP10.84□□□□□ -0.67
PTPRF-212ENST00000477970 DNPH1O43598 174 aa10.84□□□□□ -0.67
PTPRF-212ENST00000477970 EIF1BO60739 113 aaKnown RBP10.84□□□□□ -0.67
PTPRF-212ENST00000477970 VAMP5O95183 116 aa10.84□□□□□ -0.67
PTPRF-212ENST00000477970 BPNT1O95861 308 aa10.84□□□□□ -0.67
PTPRF-212ENST00000477970 ACP1P24666 158 aa10.84□□□□□ -0.67
PTPRF-212ENST00000477970 BDKRB2P30411 391 aa10.84□□□□□ -0.67
PTPRF-212ENST00000477970 TAS2R19P59542 299 aa10.84□□□□□ -0.67
PTPRF-212ENST00000477970 LSM6P62312 80 aaKnown RBP10.84□□□□□ -0.67
PTPRF-212ENST00000477970 DBX2Q6ZNG2 339 aa10.84□□□□□ -0.67
PTPRF-212ENST00000477970 TMEM54Q969K7 222 aa10.84□□□□□ -0.67
PTPRF-212ENST00000477970 EDEM2Q9BV94 578 aa10.84□□□□□ -0.67
PTPRF-212ENST00000477970 TMPRSS13Q9BYE2 586 aa10.84□□□□□ -0.67
PTPRF-212ENST00000477970 ATG5Q9H1Y0 275 aa10.84□□□□□ -0.67
PTPRF-212ENST00000477970 ELF5Q9UKW6 265 aaPredicted RBP10.84□□□□□ -0.67
PTPRF-212ENST00000477970 RAB22AQ9UL26 194 aa10.84□□□□□ -0.67
PTPRF-212ENST00000477970 AKR7A2O43488 359 aa10.84□□□□□ -0.67
PTPRF-212ENST00000477970 CD74P04233 296 aa10.84□□□□□ -0.67
PTPRF-212ENST00000477970 LIFP15018 202 aa10.84□□□□□ -0.67
PTPRF-212ENST00000477970 SSR4P51571 173 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms