RNA–Protein interactions for RNA: ENST00000477520.1

PTCD3-212, Transcript of pentatricopeptide repeat domain 3, human

TSL 4

Gene PTCD3, Length 556 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-212	ENST00000477520	LY6G6F	Q5SQ64	297 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	COL5A1-AS1	Q5SY13	56 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	C1orf194	Q5T5A4	169 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	TMEM268	Q5VZI3	342 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	C18orf63	Q68DL7	685 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	SLC25A24	Q6NUK1	477 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	OPN5	Q6U736	354 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	CD300LG	Q6UXG3	332 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	GDPD4	Q6W3E5	623 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	SLC25A26	Q70HW3	274 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	SSX7	Q7RTT5	188 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	SZRD1	Q7Z422	152 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	GLT6D1	Q7Z4J2	308 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	LYG2	Q86SG7	212 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	NR2C2AP	Q86WQ0	139 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	TMEM183A	Q8IXX5	376 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	APCDD1	Q8J025	514 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	MMP21	Q8N119	569 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	FAM24B	Q8N5W8	94 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	TMEM104	Q8NE00	496 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	PLPP5	Q8NEB5	264 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	CCDC54	Q8NEL0	328 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	OR2T33	Q8NG76	320 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	OR4K5	Q8NGD3	323 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	OR56B2P	Q8NGI1	322 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	OR2A12	Q8NGT7	310 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	OR51F2	Q8NH61	342 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	DUSP19	Q8WTR2	217 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	ORAOV1	Q8WV07	137 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	MITD1	Q8WV92	249 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	PPP1R1C	Q8WVI7	109 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	TNFRSF14	Q92956	283 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	TMEM18	Q96B42	140 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	APOLD1	Q96LR9	279 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	C5orf34	Q96MH7	638 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	WDR92	Q96MX6	357 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	PRRT1	Q99946	306 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	ADAT1	Q9BUB4	502 aa	Known RBP	4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	TRMT61B	Q9BVS5	477 aa	Known RBP	4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	ACTRT3	Q9BYD9	372 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	ULBP1	Q9BZM6	244 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	WWTR1	Q9GZV5	400 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	ZNF350	Q9GZX5	532 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	CXCL16	Q9H2A7	254 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	PRO3102	Q9H379	93 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	CAPN10	Q9HC96	672 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	ADAP2	Q9NPF8	381 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	IL26	Q9NPH9	171 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	LHX9	Q9NQ69	397 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	MEPE	Q9NQ76	525 aa	Predicted RBP	4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	GPR173	Q9NS66	373 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	LYRM2	Q9NU23	88 aa	Predicted RBP	4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	OR5AC2	Q9NZP5	309 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	LUZP4	Q9P127	313 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	OR14J1	Q9UGF5	321 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	IL20RA	Q9UHF4	553 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	A4GNT	Q9UNA3	340 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	SLC22A14	Q9Y267	594 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	MEMO1	Q9Y316	297 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	PPIL1	Q9Y3C6	166 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520		V9GY05	133 aa		4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	PRRC2B	Q5JSZ5	2229 aa	Known RBP	4.23	□□□□□ -1.73
PTCD3-212	ENST00000477520	COL4A4	P53420	1690 aa	Predicted RBP	4.22	□□□□□ -1.73
PTCD3-212	ENST00000477520	BRWD1	Q9NSI6	2320 aa		4.22	□□□□□ -1.73
PTCD3-212	ENST00000477520		A0A1B0GVC2	190 aa		4.22	□□□□□ -1.73
PTCD3-212	ENST00000477520		A0A1W2PPH5	198 aa		4.22	□□□□□ -1.73
PTCD3-212	ENST00000477520	C20orf202	A1L168	122 aa		4.22	□□□□□ -1.73
PTCD3-212	ENST00000477520	SMIM30	A4D0T7	59 aa		4.22	□□□□□ -1.73
PTCD3-212	ENST00000477520	C2orf78	A6NCI8	922 aa		4.22	□□□□□ -1.73
PTCD3-212	ENST00000477520	PRAMEF25	A6NGN4	478 aa		4.22	□□□□□ -1.73
PTCD3-212	ENST00000477520	IFITM10	A6NMD0	228 aa		4.22	□□□□□ -1.73
PTCD3-212	ENST00000477520	DRGX	A6NNA5	263 aa		4.22	□□□□□ -1.73
PTCD3-212	ENST00000477520		H3BNC9	293 aa		4.22	□□□□□ -1.73
PTCD3-212	ENST00000477520		J3KTA2	159 aa		4.22	□□□□□ -1.73
PTCD3-212	ENST00000477520		M0R129	80 aa		4.22	□□□□□ -1.73
PTCD3-212	ENST00000477520	RAB27B	O00194	218 aa		4.22	□□□□□ -1.73
PTCD3-212	ENST00000477520	FOXE1	O00358	373 aa	Predicted RBP	4.22	□□□□□ -1.73
PTCD3-212	ENST00000477520	BHLHE40	O14503	412 aa		4.22	□□□□□ -1.73
PTCD3-212	ENST00000477520	PHOX2A	O14813	284 aa		4.22	□□□□□ -1.73
PTCD3-212	ENST00000477520	FFAR1	O14842	300 aa		4.22	□□□□□ -1.73
PTCD3-212	ENST00000477520	OR1F1	O43749	312 aa		4.22	□□□□□ -1.73
PTCD3-212	ENST00000477520	SRPX2	O60687	465 aa	Predicted RBP	4.22	□□□□□ -1.73
PTCD3-212	ENST00000477520	SCGN	O76038	276 aa		4.22	□□□□□ -1.73
PTCD3-212	ENST00000477520	YIF1A	O95070	293 aa		4.22	□□□□□ -1.73
PTCD3-212	ENST00000477520	RCBTB2	O95199	551 aa		4.22	□□□□□ -1.73
PTCD3-212	ENST00000477520	SOX14	O95416	240 aa		4.22	□□□□□ -1.73
PTCD3-212	ENST00000477520	DUS4L	O95620	317 aa	Known RBP	4.22	□□□□□ -1.73
PTCD3-212	ENST00000477520	MPIG6B	O95866	241 aa		4.22	□□□□□ -1.73
PTCD3-212	ENST00000477520	PMP2	P02689	132 aa		4.22	□□□□□ -1.73
PTCD3-212	ENST00000477520	SNRNP70	P08621	437 aa	Known RBP	4.22	□□□□□ -1.73
PTCD3-212	ENST00000477520	OR2T7	P0C7T2	308 aa		4.22	□□□□□ -1.73
PTCD3-212	ENST00000477520	GZMB	P10144	247 aa		4.22	□□□□□ -1.73
PTCD3-212	ENST00000477520	CTSA	P10619	480 aa		4.22	□□□□□ -1.73
PTCD3-212	ENST00000477520	LAMP1	P11279	417 aa		4.22	□□□□□ -1.73
PTCD3-212	ENST00000477520	GTF2F2	P13984	249 aa		4.22	□□□□□ -1.73
PTCD3-212	ENST00000477520	SRM	P19623	302 aa		4.22	□□□□□ -1.73
PTCD3-212	ENST00000477520	G0S2	P27469	103 aa		4.22	□□□□□ -1.73
PTCD3-212	ENST00000477520	TEAD1	P28347	426 aa		4.22	□□□□□ -1.73
PTCD3-212	ENST00000477520	AQP1	P29972	269 aa		4.22	□□□□□ -1.73
PTCD3-212	ENST00000477520	TIA1	P31483	386 aa	Known RBP eCLIP	4.22	□□□□□ -1.73	7e-6	■■■□□ 17.1

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