RNA–Protein interactions for RNA: ENST00000475470.1

RPUSD3-215, Transcript of RNA pseudouridylate synthase domain containing 3, human

TSL 2

Gene RPUSD3, Length 2,413 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RPUSD3-215	ENST00000475470	MEGF11	A6BM72	1044 aa		13.6	□□□□□ -0.23
RPUSD3-215	ENST00000475470	LMX1B	O60663	402 aa		13.6	□□□□□ -0.23
RPUSD3-215	ENST00000475470	CSRP1	P21291	193 aa	Known RBP	13.6	□□□□□ -0.23
RPUSD3-215	ENST00000475470	MSR1	P21757	451 aa		13.6	□□□□□ -0.23
RPUSD3-215	ENST00000475470	RCVRN	P35243	200 aa		13.6	□□□□□ -0.23
RPUSD3-215	ENST00000475470	GDNF	P39905	211 aa		13.6	□□□□□ -0.23
RPUSD3-215	ENST00000475470	PTH2R	P49190	550 aa		13.6	□□□□□ -0.23
RPUSD3-215	ENST00000475470	POU3F4	P49335	361 aa		13.6	□□□□□ -0.23
RPUSD3-215	ENST00000475470	PRKX	P51817	358 aa		13.6	□□□□□ -0.23
RPUSD3-215	ENST00000475470	PSMA6	P60900	246 aa	Known RBP	13.6	□□□□□ -0.23
RPUSD3-215	ENST00000475470	LSM6	P62312	80 aa	Known RBP	13.6	□□□□□ -0.23
RPUSD3-215	ENST00000475470	FOXO1	Q12778	655 aa		13.6	□□□□□ -0.23
RPUSD3-215	ENST00000475470	GLRX5	Q86SX6	157 aa		13.6	□□□□□ -0.23
RPUSD3-215	ENST00000475470	PIP4P1	Q86T03	277 aa		13.6	□□□□□ -0.23
RPUSD3-215	ENST00000475470	ZIC4	Q8N9L1	334 aa		13.6	□□□□□ -0.23
RPUSD3-215	ENST00000475470	C15orf40	Q8WUR7	153 aa		13.6	□□□□□ -0.23
RPUSD3-215	ENST00000475470	FCAMR	Q8WWV6	532 aa		13.6	□□□□□ -0.23
RPUSD3-215	ENST00000475470	NKD1	Q969G9	470 aa		13.6	□□□□□ -0.23
RPUSD3-215	ENST00000475470	CREB3L1	Q96BA8	519 aa		13.6	□□□□□ -0.23
RPUSD3-215	ENST00000475470	INTS12	Q96CB8	462 aa	Known RBP	13.6	□□□□□ -0.23
RPUSD3-215	ENST00000475470	ZNF416	Q9BWM5	594 aa		13.6	□□□□□ -0.23
RPUSD3-215	ENST00000475470	RBM24	Q9BX46	236 aa	Known RBP	13.6	□□□□□ -0.23
RPUSD3-215	ENST00000475470	NELFA	Q9H3P2	528 aa		13.6	□□□□□ -0.23
RPUSD3-215	ENST00000475470	PARD6A	Q9NPB6	346 aa		13.6	□□□□□ -0.23
RPUSD3-215	ENST00000475470	PHF3	Q92576	2039 aa	Known RBP	13.6	□□□□□ -0.23
RPUSD3-215	ENST00000475470	INMT-MINDY4	F8WBC2	141 aa		13.59	□□□□□ -0.23
RPUSD3-215	ENST00000475470	GABARAP	H6UMI1	98 aa		13.59	□□□□□ -0.23
RPUSD3-215	ENST00000475470	SYT7	O43581	403 aa		13.59	□□□□□ -0.23
RPUSD3-215	ENST00000475470	CXCL13	O43927	109 aa		13.59	□□□□□ -0.23
RPUSD3-215	ENST00000475470	TRAPPC2	P0DI81	140 aa		13.59	□□□□□ -0.23
RPUSD3-215	ENST00000475470	TRAPPC2B	P0DI82	140 aa		13.59	□□□□□ -0.23
RPUSD3-215	ENST00000475470	PLA2G7	Q13093	441 aa		13.59	□□□□□ -0.23
RPUSD3-215	ENST00000475470	C2orf76	Q3KRA6	126 aa		13.59	□□□□□ -0.23
RPUSD3-215	ENST00000475470	PLA1A	Q53H76	456 aa		13.59	□□□□□ -0.23
RPUSD3-215	ENST00000475470	LINC00696	Q6ZRV3	163 aa		13.59	□□□□□ -0.23
RPUSD3-215	ENST00000475470	OR2M7	Q8NG81	312 aa		13.59	□□□□□ -0.23
RPUSD3-215	ENST00000475470	OR6F1	Q8NGZ6	308 aa		13.59	□□□□□ -0.23
RPUSD3-215	ENST00000475470	OR2V1	Q8NHB1	315 aa		13.59	□□□□□ -0.23
RPUSD3-215	ENST00000475470	GCDH	Q92947	438 aa	Predicted RBP	13.59	□□□□□ -0.23
RPUSD3-215	ENST00000475470	FAM3D	Q96BQ1	224 aa		13.59	□□□□□ -0.23
RPUSD3-215	ENST00000475470	ZNF775	Q96BV0	537 aa	Predicted RBP	13.59	□□□□□ -0.23
RPUSD3-215	ENST00000475470	FER1L6-AS2	Q96M78	137 aa		13.59	□□□□□ -0.23
RPUSD3-215	ENST00000475470	ULBP2	Q9BZM5	246 aa		13.59	□□□□□ -0.23
RPUSD3-215	ENST00000475470	MOB1A	Q9H8S9	216 aa		13.59	□□□□□ -0.23
RPUSD3-215	ENST00000475470	ZNF275	Q9NSD4	429 aa	Predicted RBP	13.59	□□□□□ -0.23
RPUSD3-215	ENST00000475470	DDX28	Q9NUL7	540 aa	Known RBP	13.59	□□□□□ -0.23
RPUSD3-215	ENST00000475470	ZNF221	Q9UK13	617 aa		13.59	□□□□□ -0.23
RPUSD3-215	ENST00000475470	KIAA1549	Q9HCM3	1950 aa		13.59	□□□□□ -0.23
RPUSD3-215	ENST00000475470	DHH	O43323	396 aa		13.59	□□□□□ -0.23
RPUSD3-215	ENST00000475470	TMIGD3	P0DMS9	266 aa	Predicted RBP	13.59	□□□□□ -0.23
RPUSD3-215	ENST00000475470	BTC	P35070	178 aa		13.59	□□□□□ -0.23
RPUSD3-215	ENST00000475470	ZNF133	P52736	654 aa	Predicted RBP	13.59	□□□□□ -0.23
RPUSD3-215	ENST00000475470	SUCLG1	P53597	346 aa	Known RBP	13.59	□□□□□ -0.23
RPUSD3-215	ENST00000475470	TAS2R20	P59543	309 aa		13.59	□□□□□ -0.23
RPUSD3-215	ENST00000475470	SPOCK1	Q08629	439 aa		13.59	□□□□□ -0.23
RPUSD3-215	ENST00000475470	OR1C1	Q15619	314 aa		13.59	□□□□□ -0.23
RPUSD3-215	ENST00000475470	SLC7A5P1	Q8MH63	180 aa		13.59	□□□□□ -0.23
RPUSD3-215	ENST00000475470	CLEC1A	Q8NC01	280 aa		13.59	□□□□□ -0.23
RPUSD3-215	ENST00000475470	DEFB124	Q8NES8	71 aa		13.59	□□□□□ -0.23
RPUSD3-215	ENST00000475470	OR51A2	Q8NGJ7	313 aa		13.59	□□□□□ -0.23
RPUSD3-215	ENST00000475470	OR52I2	Q8NH67	350 aa		13.59	□□□□□ -0.23
RPUSD3-215	ENST00000475470	OR10D3	Q8NH80	312 aa		13.59	□□□□□ -0.23
RPUSD3-215	ENST00000475470	FGGY	Q96C11	551 aa		13.59	□□□□□ -0.23
RPUSD3-215	ENST00000475470	B3GNT4	Q9C0J1	378 aa		13.59	□□□□□ -0.23
RPUSD3-215	ENST00000475470	DPAGT1	Q9H3H5	408 aa		13.59	□□□□□ -0.23
RPUSD3-215	ENST00000475470	PNRC2	Q9NPJ4	139 aa	Known RBP	13.59	□□□□□ -0.23
RPUSD3-215	ENST00000475470	NUFIP1	Q9UHK0	495 aa	Known RBP	13.59	□□□□□ -0.23
RPUSD3-215	ENST00000475470	ALG5	Q9Y673	324 aa		13.59	□□□□□ -0.23
RPUSD3-215	ENST00000475470	LOC100289279	A0A1B0GTE1	492 aa		13.58	□□□□□ -0.24
RPUSD3-215	ENST00000475470	DCDC2B	A2VCK2	349 aa		13.58	□□□□□ -0.24
RPUSD3-215	ENST00000475470	KRT33A	O76009	404 aa		13.58	□□□□□ -0.24
RPUSD3-215	ENST00000475470	HLA-DMA	P28067	261 aa		13.58	□□□□□ -0.24
RPUSD3-215	ENST00000475470	HTR2C	P28335	458 aa		13.58	□□□□□ -0.24
RPUSD3-215	ENST00000475470	GNAL	P38405	381 aa		13.58	□□□□□ -0.24
RPUSD3-215	ENST00000475470	ZNF84	P51523	738 aa		13.58	□□□□□ -0.24
RPUSD3-215	ENST00000475470	MRPS10	P82664	201 aa	Known RBP	13.58	□□□□□ -0.24
RPUSD3-215	ENST00000475470	SNTB2	Q13425	540 aa	Known RBP	13.58	□□□□□ -0.24
RPUSD3-215	ENST00000475470	TBRG1	Q3YBR2	411 aa		13.58	□□□□□ -0.24
RPUSD3-215	ENST00000475470	GLYATL3	Q5SZD4	288 aa		13.58	□□□□□ -0.24
RPUSD3-215	ENST00000475470	FAM166A	Q6J272	317 aa		13.58	□□□□□ -0.24
RPUSD3-215	ENST00000475470	ROBO4	Q8WZ75	1007 aa		13.58	□□□□□ -0.24
RPUSD3-215	ENST00000475470	PHF21A	Q96BD5	680 aa		13.58	□□□□□ -0.24
RPUSD3-215	ENST00000475470	NKX3-1	Q99801	234 aa	Predicted RBP	13.58	□□□□□ -0.24
RPUSD3-215	ENST00000475470	C7orf50	Q9BRJ6	194 aa	Known RBP	13.58	□□□□□ -0.24
RPUSD3-215	ENST00000475470	PLEKHA1	Q9HB21	404 aa		13.58	□□□□□ -0.24
RPUSD3-215	ENST00000475470	PLA2G3	Q9NZ20	509 aa		13.58	□□□□□ -0.24
RPUSD3-215	ENST00000475470	B4GALT7	Q9UBV7	327 aa		13.58	□□□□□ -0.24
RPUSD3-215	ENST00000475470	CGGBP1	Q9UFW8	167 aa	Predicted RBP	13.58	□□□□□ -0.24
RPUSD3-215	ENST00000475470	FOXD3	Q9UJU5	478 aa	Predicted RBP	13.58	□□□□□ -0.24
RPUSD3-215	ENST00000475470	FREM2	Q5SZK8	3169 aa		13.58	□□□□□ -0.24
RPUSD3-215	ENST00000475470		A0A1B0GVI7	797 aa		13.58	□□□□□ -0.24
RPUSD3-215	ENST00000475470	SLC2A1	P11166	492 aa		13.58	□□□□□ -0.24
RPUSD3-215	ENST00000475470	RFC3	P40938	356 aa		13.58	□□□□□ -0.24
RPUSD3-215	ENST00000475470	MNDA	P41218	407 aa		13.58	□□□□□ -0.24
RPUSD3-215	ENST00000475470	CX3CR1	P49238	355 aa		13.58	□□□□□ -0.24
RPUSD3-215	ENST00000475470	NUBP1	P53384	320 aa		13.58	□□□□□ -0.24
RPUSD3-215	ENST00000475470	GFRA1	P56159	465 aa		13.58	□□□□□ -0.24
RPUSD3-215	ENST00000475470	RAB25	P57735	213 aa		13.58	□□□□□ -0.24
RPUSD3-215	ENST00000475470	ZNF121	P58317	390 aa	Predicted RBP	13.58	□□□□□ -0.24
RPUSD3-215	ENST00000475470	GRB2	P62993	217 aa	Known RBP	13.58	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms