RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 PLPP2O43688 288 aa13.3□□□□□ -0.28
CCDC88B-205ENST00000472524 DEAF1O75398 565 aaPredicted RBP13.3□□□□□ -0.28
CCDC88B-205ENST00000472524 PNPP00491 289 aa13.3□□□□□ -0.28
CCDC88B-205ENST00000472524 ATP6V1B2P21281 511 aa13.3□□□□□ -0.28
CCDC88B-205ENST00000472524 KITLGP21583 273 aa13.3□□□□□ -0.28
CCDC88B-205ENST00000472524 TNFSF4P23510 183 aa13.3□□□□□ -0.28
CCDC88B-205ENST00000472524 GSSP48637 474 aa13.3□□□□□ -0.28
CCDC88B-205ENST00000472524 KCNMB1Q16558 191 aa13.3□□□□□ -0.28
CCDC88B-205ENST00000472524 PGBD2Q6P3X8 592 aa13.3□□□□□ -0.28
CCDC88B-205ENST00000472524 PGM2L1Q6PCE3 622 aa13.3□□□□□ -0.28
CCDC88B-205ENST00000472524 ZNF620Q6ZNG0 422 aa13.3□□□□□ -0.28
CCDC88B-205ENST00000472524 Q6ZR03 302 aa13.3□□□□□ -0.28
CCDC88B-205ENST00000472524 PEG10Q86TG7 708 aaKnown RBP13.3□□□□□ -0.28
CCDC88B-205ENST00000472524 LINC00346Q8IVM7 164 aa13.3□□□□□ -0.28
CCDC88B-205ENST00000472524 OR6V1Q8N148 313 aa13.3□□□□□ -0.28
CCDC88B-205ENST00000472524 GJC3Q8NFK1 279 aa13.3□□□□□ -0.28
CCDC88B-205ENST00000472524 OR9Q2Q8NGE9 314 aa13.3□□□□□ -0.28
CCDC88B-205ENST00000472524 COG8Q96MW5 612 aa13.3□□□□□ -0.28
CCDC88B-205ENST00000472524 DCLRE1CQ96SD1 692 aaKnown RBP13.3□□□□□ -0.28
CCDC88B-205ENST00000472524 OCEL1Q9H607 264 aa13.3□□□□□ -0.28
CCDC88B-205ENST00000472524 METRNQ9UJH8 293 aa13.3□□□□□ -0.28
CCDC88B-205ENST00000472524 ARPC3O15145 178 aa13.29□□□□□ -0.28
CCDC88B-205ENST00000472524 VENTXO95231 258 aa13.29□□□□□ -0.28
CCDC88B-205ENST00000472524 HLA-DQA2P01906 255 aa13.29□□□□□ -0.28
CCDC88B-205ENST00000472524 TUBG1P23258 451 aa13.29□□□□□ -0.28
CCDC88B-205ENST00000472524 TSPAN31Q12999 210 aa13.29□□□□□ -0.28
CCDC88B-205ENST00000472524 HLXQ14774 488 aaPredicted RBP13.29□□□□□ -0.28
CCDC88B-205ENST00000472524 SPATS1Q496A3 300 aa13.29□□□□□ -0.28
CCDC88B-205ENST00000472524 CLEC12AQ5QGZ9 265 aa13.29□□□□□ -0.28
CCDC88B-205ENST00000472524 SLC35F1Q5T1Q4 408 aa13.29□□□□□ -0.28
CCDC88B-205ENST00000472524 SLC26A10Q8NG04 563 aa13.29□□□□□ -0.28
CCDC88B-205ENST00000472524 OR52E2Q8NGJ4 325 aa13.29□□□□□ -0.28
CCDC88B-205ENST00000472524 ITLN1Q8WWA0 313 aa13.29□□□□□ -0.28
CCDC88B-205ENST00000472524 PTP4A1Q93096 173 aa13.29□□□□□ -0.28
CCDC88B-205ENST00000472524 HAVCR1Q96D42 359 aa13.29□□□□□ -0.28
CCDC88B-205ENST00000472524 COQ7Q99807 217 aa13.29□□□□□ -0.28
CCDC88B-205ENST00000472524 HDHD2Q9H0R4 259 aa13.29□□□□□ -0.28
CCDC88B-205ENST00000472524 EGLN3Q9H6Z9 239 aa13.29□□□□□ -0.28
CCDC88B-205ENST00000472524 G6PC2Q9NQR9 355 aa13.29□□□□□ -0.28
CCDC88B-205ENST00000472524 TUBG2Q9NRH3 451 aa13.29□□□□□ -0.28
CCDC88B-205ENST00000472524 ATPIF1Q9UII2 106 aa13.29□□□□□ -0.28
CCDC88B-205ENST00000472524 LOC105371242A0A075B767 164 aa13.28□□□□□ -0.28
CCDC88B-205ENST00000472524 OR6C68A6NDL8 312 aa13.28□□□□□ -0.28
CCDC88B-205ENST00000472524 B2RBV5 119 aa13.28□□□□□ -0.28
CCDC88B-205ENST00000472524 TNFRSF11BO00300 401 aa13.28□□□□□ -0.28
CCDC88B-205ENST00000472524 RAC2P15153 192 aa13.28□□□□□ -0.28
CCDC88B-205ENST00000472524 RGS6P49758 472 aa13.28□□□□□ -0.28
CCDC88B-205ENST00000472524 MNAT1P51948 309 aa13.28□□□□□ -0.28
CCDC88B-205ENST00000472524 HIST1H3AP68431 136 aa13.28□□□□□ -0.28
CCDC88B-205ENST00000472524 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.28□□□□□ -0.28
CCDC88B-205ENST00000472524 COX10Q12887 443 aa13.28□□□□□ -0.28
CCDC88B-205ENST00000472524 HIST2H3PS2Q5TEC6 136 aa13.28□□□□□ -0.28
CCDC88B-205ENST00000472524 OR2T2Q6IF00 324 aa13.28□□□□□ -0.28
CCDC88B-205ENST00000472524 CFAP77Q6ZQR2 320 aa13.28□□□□□ -0.28
CCDC88B-205ENST00000472524 HIST2H3AQ71DI3 136 aa13.28□□□□□ -0.28
CCDC88B-205ENST00000472524 FITM2Q8N6M3 262 aa13.28□□□□□ -0.28
CCDC88B-205ENST00000472524 OR52L1Q8NGH7 329 aa13.28□□□□□ -0.28
CCDC88B-205ENST00000472524 OR5L1Q8NGL2 311 aa13.28□□□□□ -0.28
CCDC88B-205ENST00000472524 APOBEC3DQ96AK3 386 aaPredicted RBP13.28□□□□□ -0.28
CCDC88B-205ENST00000472524 TMEM106BQ9NUM4 274 aa13.28□□□□□ -0.28
CCDC88B-205ENST00000472524 ACTR3BQ9P1U1 418 aa13.28□□□□□ -0.28
CCDC88B-205ENST00000472524 LYVE1Q9Y5Y7 322 aa13.28□□□□□ -0.28
CCDC88B-205ENST00000472524 NPTNQ9Y639 398 aa13.28□□□□□ -0.28
CCDC88B-205ENST00000472524 A0A0G2JMP0 313 aa13.27□□□□□ -0.29
CCDC88B-205ENST00000472524 A0A0X1KG70 313 aa13.27□□□□□ -0.29
CCDC88B-205ENST00000472524 IDH3BO43837 385 aa13.27□□□□□ -0.29
CCDC88B-205ENST00000472524 RGS9O75916 674 aaPredicted RBP13.27□□□□□ -0.29
CCDC88B-205ENST00000472524 KRT36O76013 467 aa13.27□□□□□ -0.29
CCDC88B-205ENST00000472524 AVPP01185 164 aa13.27□□□□□ -0.29
CCDC88B-205ENST00000472524 SBK2P0C263 348 aa13.27□□□□□ -0.29
CCDC88B-205ENST00000472524 TNFRSF1AP19438 455 aa13.27□□□□□ -0.29
CCDC88B-205ENST00000472524 LCN2P80188 198 aa13.27□□□□□ -0.29
CCDC88B-205ENST00000472524 PPP1R8Q12972 351 aaKnown RBP13.27□□□□□ -0.29
CCDC88B-205ENST00000472524 SLC36A3Q495N2 470 aa13.27□□□□□ -0.29
CCDC88B-205ENST00000472524 DCAF12L2Q5VW00 463 aa13.27□□□□□ -0.29
CCDC88B-205ENST00000472524 SLC18B1Q6NT16 456 aa13.27□□□□□ -0.29
CCDC88B-205ENST00000472524 ZBTB46Q86UZ6 589 aa13.27□□□□□ -0.29
CCDC88B-205ENST00000472524 ATG16L2Q8NAA4 619 aa13.27□□□□□ -0.29
CCDC88B-205ENST00000472524 CYB561A3Q8NBI2 242 aa13.27□□□□□ -0.29
CCDC88B-205ENST00000472524 SEMA6DQ8NFY4 1073 aa13.27□□□□□ -0.29
CCDC88B-205ENST00000472524 OR4M2Q8NGB6 313 aa13.27□□□□□ -0.29
CCDC88B-205ENST00000472524 OR10AD1Q8NGE0 317 aa13.27□□□□□ -0.29
CCDC88B-205ENST00000472524 ST7LQ8TDW4 575 aa13.27□□□□□ -0.29
CCDC88B-205ENST00000472524 NSL1Q96IY1 281 aa13.27□□□□□ -0.29
CCDC88B-205ENST00000472524 OR2V2Q96R30 315 aa13.27□□□□□ -0.29
CCDC88B-205ENST00000472524 CCT8L2Q96SF2 557 aa13.27□□□□□ -0.29
CCDC88B-205ENST00000472524 PITX2Q99697 317 aa13.27□□□□□ -0.29
CCDC88B-205ENST00000472524 BTBD10Q9BSF8 475 aa13.27□□□□□ -0.29
CCDC88B-205ENST00000472524 CDADC1Q9BWV3 514 aa13.27□□□□□ -0.29
CCDC88B-205ENST00000472524 WDR76Q9H967 626 aa13.27□□□□□ -0.29
CCDC88B-205ENST00000472524 IL19Q9UHD0 177 aa13.27□□□□□ -0.29
CCDC88B-205ENST00000472524 CDH10Q9Y6N8 788 aa13.27□□□□□ -0.29
CCDC88B-205ENST00000472524 F5H5K5 113 aa13.26□□□□□ -0.29
CCDC88B-205ENST00000472524 J3QW42 95 aa13.26□□□□□ -0.29
CCDC88B-205ENST00000472524 SURF4O15260 269 aa13.26□□□□□ -0.29
CCDC88B-205ENST00000472524 IGHV2-70P01814 119 aa13.26□□□□□ -0.29
CCDC88B-205ENST00000472524 CFPP27918 469 aa13.26□□□□□ -0.29
CCDC88B-205ENST00000472524 PYCR1P32322 319 aa13.26□□□□□ -0.29
CCDC88B-205ENST00000472524 C12orf54Q6X4T0 127 aa13.26□□□□□ -0.29
CCDC88B-205ENST00000472524 FBXW12Q6X9E4 464 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms