RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 RASL10BQ96S79 203 aa7.96□□□□□ -1.14
SYNE1-217ENST00000466159 B3GNT4Q9C0J1 378 aa7.96□□□□□ -1.14
SYNE1-217ENST00000466159 PRO3102Q9H379 93 aa7.96□□□□□ -1.14
SYNE1-217ENST00000466159 SEC61A2Q9H9S3 476 aa7.96□□□□□ -1.14
SYNE1-217ENST00000466159 FANCFQ9NPI8 374 aa7.96□□□□□ -1.14
SYNE1-217ENST00000466159 KLHL13Q9P2N7 655 aa7.96□□□□□ -1.14
SYNE1-217ENST00000466159 RHBDD3Q9Y3P4 386 aa7.96□□□□□ -1.14
SYNE1-217ENST00000466159 WDFY4Q6ZS81 3184 aa7.96□□□□□ -1.14
SYNE1-217ENST00000466159 LOC390937A0A1W2PQ73 354 aa7.96□□□□□ -1.14
SYNE1-217ENST00000466159 PLSCR5A0PG75 271 aa7.96□□□□□ -1.14
SYNE1-217ENST00000466159 LPLP06858 475 aa7.96□□□□□ -1.14
SYNE1-217ENST00000466159 CELA2AP08217 269 aa7.96□□□□□ -1.14
SYNE1-217ENST00000466159 UBCP0CG48 685 aaKnown RBP7.96□□□□□ -1.14
SYNE1-217ENST00000466159 MSX1P28360 303 aa7.96□□□□□ -1.14
SYNE1-217ENST00000466159 LAP3P28838 519 aa7.96□□□□□ -1.14
SYNE1-217ENST00000466159 SFTPDP35247 375 aa7.96□□□□□ -1.14
SYNE1-217ENST00000466159 GNALP38405 381 aa7.96□□□□□ -1.14
SYNE1-217ENST00000466159 P2RY4P51582 365 aa7.96□□□□□ -1.14
SYNE1-217ENST00000466159 P2RX3P56373 397 aa7.96□□□□□ -1.14
SYNE1-217ENST00000466159 PMPCAQ10713 525 aa7.96□□□□□ -1.14
SYNE1-217ENST00000466159 TOMM20Q15388 145 aa7.96□□□□□ -1.14
SYNE1-217ENST00000466159 ESCO2Q56NI9 601 aa7.96□□□□□ -1.14
SYNE1-217ENST00000466159 PRAMEF20Q5VT98 475 aa7.96□□□□□ -1.14
SYNE1-217ENST00000466159 CFAP77Q6ZQR2 320 aa7.96□□□□□ -1.14
SYNE1-217ENST00000466159 UEVLDQ8IX04 471 aa7.96□□□□□ -1.14
SYNE1-217ENST00000466159 GALNT16Q8N428 558 aa7.96□□□□□ -1.14
SYNE1-217ENST00000466159 ACBD4Q8NC06 268 aa7.96□□□□□ -1.14
SYNE1-217ENST00000466159 OR2M3Q8NG83 312 aa7.96□□□□□ -1.14
SYNE1-217ENST00000466159 OR52N4Q8NGI2 321 aa7.96□□□□□ -1.14
SYNE1-217ENST00000466159 ADAT3Q96EY9 351 aaPredicted RBP7.96□□□□□ -1.14
SYNE1-217ENST00000466159 DEFB126Q9BYW3 111 aa7.96□□□□□ -1.14
SYNE1-217ENST00000466159 TINAGL1Q9GZM7 467 aaPredicted RBP7.96□□□□□ -1.14
SYNE1-217ENST00000466159 PBOV1Q9GZY1 135 aa7.96□□□□□ -1.14
SYNE1-217ENST00000466159 C1orf198Q9H425 327 aa7.96□□□□□ -1.14
SYNE1-217ENST00000466159 EXO5Q9H790 373 aa7.96□□□□□ -1.14
SYNE1-217ENST00000466159 PTGES2Q9H7Z7 377 aa7.96□□□□□ -1.14
SYNE1-217ENST00000466159 CNTD2Q9H8S5 307 aa7.96□□□□□ -1.14
SYNE1-217ENST00000466159 TMA7Q9Y2S6 64 aaKnown RBP7.96□□□□□ -1.14
SYNE1-217ENST00000466159 RTTNQ86VV8 2226 aa7.95□□□□□ -1.14
SYNE1-217ENST00000466159 IGLV3-32A0A0A0MS00 114 aa7.95□□□□□ -1.14
SYNE1-217ENST00000466159 UBE2QL1A1L167 161 aa7.95□□□□□ -1.14
SYNE1-217ENST00000466159 TMEM235A6NFC5 223 aa7.95□□□□□ -1.14
SYNE1-217ENST00000466159 WIPF3A6NGB9 483 aa7.95□□□□□ -1.14
SYNE1-217ENST00000466159 M0R233 179 aa7.95□□□□□ -1.14
SYNE1-217ENST00000466159 SYT7O43581 403 aa7.95□□□□□ -1.14
SYNE1-217ENST00000466159 RAB3DO95716 219 aa7.95□□□□□ -1.14
SYNE1-217ENST00000466159 ZNF28P17035 718 aa7.95□□□□□ -1.14
SYNE1-217ENST00000466159 CLRN1P58418 232 aa7.95□□□□□ -1.14
SYNE1-217ENST00000466159 ACTBP60709 375 aa7.95□□□□□ -1.14
SYNE1-217ENST00000466159 RAP2BP61225 183 aa7.95□□□□□ -1.14
SYNE1-217ENST00000466159 ACTG1P63261 375 aa7.95□□□□□ -1.14
SYNE1-217ENST00000466159 C1orf100Q5SVJ3 147 aa7.95□□□□□ -1.14
SYNE1-217ENST00000466159 MRPL14Q6P1L8 145 aaKnown RBP7.95□□□□□ -1.14
SYNE1-217ENST00000466159 C3orf33Q6P1S2 294 aa7.95□□□□□ -1.14
SYNE1-217ENST00000466159 KLHL24Q6TFL4 600 aa7.95□□□□□ -1.14
SYNE1-217ENST00000466159 FAM198BQ6UWH4 519 aa7.95□□□□□ -1.14
SYNE1-217ENST00000466159 ZNF813Q6ZN06 617 aa7.95□□□□□ -1.14
SYNE1-217ENST00000466159 ELMOD2Q8IZ81 293 aa7.95□□□□□ -1.14
SYNE1-217ENST00000466159 WDSUB1Q8N9V3 476 aa7.95□□□□□ -1.14
SYNE1-217ENST00000466159 SLC22A8Q8TCC7 542 aa7.95□□□□□ -1.14
SYNE1-217ENST00000466159 SPACA9Q96E40 222 aaPredicted RBP7.95□□□□□ -1.14
SYNE1-217ENST00000466159 ELMOD3Q96FG2 381 aa7.95□□□□□ -1.14
SYNE1-217ENST00000466159 GDF2Q9UK05 429 aaPredicted RBP7.95□□□□□ -1.14
SYNE1-217ENST00000466159 B3GALT1Q9Y5Z6 326 aa7.95□□□□□ -1.14
SYNE1-217ENST00000466159 LHFPL6Q9Y693 200 aa7.95□□□□□ -1.14
SYNE1-217ENST00000466159 CNTRLQ7Z7A1 2325 aa7.95□□□□□ -1.14
SYNE1-217ENST00000466159 FREM2Q5SZK8 3169 aa7.95□□□□□ -1.14
SYNE1-217ENST00000466159 SDK2Q58EX2 2172 aa7.95□□□□□ -1.14
SYNE1-217ENST00000466159 RPS10-NUDT3A0A1W2PQS6 291 aa7.95□□□□□ -1.14
SYNE1-217ENST00000466159 LINC00862A6NCI5 91 aa7.95□□□□□ -1.14
SYNE1-217ENST00000466159 GOSR2O14653 212 aa7.95□□□□□ -1.14
SYNE1-217ENST00000466159 TRAF3IP2O43734 574 aaPredicted RBP7.95□□□□□ -1.14
SYNE1-217ENST00000466159 DKK1O94907 266 aa7.95□□□□□ -1.14
SYNE1-217ENST00000466159 ONECUT2O95948 504 aa7.95□□□□□ -1.14
SYNE1-217ENST00000466159 IFNA7P01567 189 aa7.95□□□□□ -1.14
SYNE1-217ENST00000466159 PGA4P0DJD7 388 aa7.95□□□□□ -1.14
SYNE1-217ENST00000466159 PGA3P0DJD8 388 aa7.95□□□□□ -1.14
SYNE1-217ENST00000466159 ANOS1P23352 680 aa7.95□□□□□ -1.14
SYNE1-217ENST00000466159 NFYAP23511 347 aaPredicted RBP7.95□□□□□ -1.14
SYNE1-217ENST00000466159 BDKRB2P30411 391 aa7.95□□□□□ -1.14
SYNE1-217ENST00000466159 TAS2R19P59542 299 aa7.95□□□□□ -1.14
SYNE1-217ENST00000466159 OPCMLQ14982 345 aa7.95□□□□□ -1.14
SYNE1-217ENST00000466159 TMEM176BQ3YBM2 270 aaPredicted RBP7.95□□□□□ -1.14
SYNE1-217ENST00000466159 C4orf46Q504U0 113 aa7.95□□□□□ -1.14
SYNE1-217ENST00000466159 THEM4Q5T1C6 240 aa7.95□□□□□ -1.14
SYNE1-217ENST00000466159 DCAF12L2Q5VW00 463 aa7.95□□□□□ -1.14
SYNE1-217ENST00000466159 B3GNTL1Q67FW5 361 aaPredicted RBP7.95□□□□□ -1.14
SYNE1-217ENST00000466159 IDO2Q6ZQW0 420 aa7.95□□□□□ -1.14
SYNE1-217ENST00000466159 PAQR4Q8N4S7 273 aaPredicted RBP7.95□□□□□ -1.14
SYNE1-217ENST00000466159 OR2AK2Q8NG84 335 aa7.95□□□□□ -1.14
SYNE1-217ENST00000466159 OR4S1Q8NGB4 309 aa7.95□□□□□ -1.14
SYNE1-217ENST00000466159 OR1J2Q8NGS2 313 aa7.95□□□□□ -1.14
SYNE1-217ENST00000466159 FAM46BQ96A09 425 aa7.95□□□□□ -1.14
SYNE1-217ENST00000466159 CMBLQ96DG6 245 aa7.95□□□□□ -1.14
SYNE1-217ENST00000466159 SOX7Q9BT81 388 aa7.95□□□□□ -1.14
SYNE1-217ENST00000466159 POFUT1Q9H488 388 aa7.95□□□□□ -1.14
SYNE1-217ENST00000466159 TMEM138Q9NPI0 162 aa7.95□□□□□ -1.14
SYNE1-217ENST00000466159 C19orf25Q9UFG5 118 aaPredicted RBP7.95□□□□□ -1.14
SYNE1-217ENST00000466159 PILRBQ9UKJ0 227 aa7.95□□□□□ -1.14
SYNE1-217ENST00000466159 KLK13Q9UKR3 277 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms