RNA–Protein interactions for RNA: ENST00000459775.5

USP39-210, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 2,148 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-210ENST00000459775 TRIB1Q96RU8 372 aa9.13□□□□□ -0.95
USP39-210ENST00000459775 RSRP1Q9BUV0 290 aa9.13□□□□□ -0.95
USP39-210ENST00000459775 NUAK2Q9H093 628 aa9.13□□□□□ -0.95
USP39-210ENST00000459775 SAV1Q9H4B6 383 aaPredicted RBP9.13□□□□□ -0.95
USP39-210ENST00000459775 PLGRKTQ9HBL7 147 aa9.13□□□□□ -0.95
USP39-210ENST00000459775 ERVK-18Q9QC07 812 aa9.13□□□□□ -0.95
USP39-210ENST00000459775 MARCH11A6NNE9 402 aa9.13□□□□□ -0.95
USP39-210ENST00000459775 AQP7O14520 342 aa9.13□□□□□ -0.95
USP39-210ENST00000459775 ITGB1BP1O14713 200 aa9.13□□□□□ -0.95
USP39-210ENST00000459775 EIF1BO60739 113 aaKnown RBP9.13□□□□□ -0.95
USP39-210ENST00000459775 FAM20BO75063 409 aa9.13□□□□□ -0.95
USP39-210ENST00000459775 MPZL1O95297 269 aa9.13□□□□□ -0.95
USP39-210ENST00000459775 APOA1P02647 267 aa9.13□□□□□ -0.95
USP39-210ENST00000459775 MRPL3P09001 348 aaKnown RBP9.13□□□□□ -0.95
USP39-210ENST00000459775 GSTP1P09211 210 aaKnown RBP9.13□□□□□ -0.95
USP39-210ENST00000459775 H2AFB2P0C5Z0 115 aa9.13□□□□□ -0.95
USP39-210ENST00000459775 C21orf33P30042 268 aaPredicted RBP9.13□□□□□ -0.95
USP39-210ENST00000459775 THBS2P35442 1172 aa9.13□□□□□ -0.95
USP39-210ENST00000459775 RPS27P42677 84 aaKnown RBP9.13□□□□□ -0.95
USP39-210ENST00000459775 TDGF1P3P51864 188 aa9.13□□□□□ -0.95
USP39-210ENST00000459775 EIF2S3LQ2VIR3 472 aaKnown RBP9.13□□□□□ -0.95
USP39-210ENST00000459775 RPTNQ6XPR3 784 aa9.13□□□□□ -0.95
USP39-210ENST00000459775 AHSA2Q719I0 299 aa9.13□□□□□ -0.95
USP39-210ENST00000459775 ZNF511Q8NB15 262 aa9.13□□□□□ -0.95
USP39-210ENST00000459775 GGHQ92820 318 aa9.13□□□□□ -0.95
USP39-210ENST00000459775 ZNF837Q96EG3 531 aaPredicted RBP9.13□□□□□ -0.95
USP39-210ENST00000459775 NAA11Q9BSU3 229 aaPredicted RBP9.13□□□□□ -0.95
USP39-210ENST00000459775 PRRG4Q9BZD6 226 aa9.13□□□□□ -0.95
USP39-210ENST00000459775 PRDM13Q9H4Q3 707 aa9.13□□□□□ -0.95
USP39-210ENST00000459775 CALHM2Q9HA72 323 aa9.13□□□□□ -0.95
USP39-210ENST00000459775 CLN6Q9NWW5 311 aa9.13□□□□□ -0.95
USP39-210ENST00000459775 PRELID3BQ9Y3B1 194 aa9.13□□□□□ -0.95
USP39-210ENST00000459775 PRSS37A4D1T9 235 aa9.12□□□□□ -0.95
USP39-210ENST00000459775 PRODHO43272 600 aa9.12□□□□□ -0.95
USP39-210ENST00000459775 TRMUO75648 421 aaKnown RBP9.12□□□□□ -0.95
USP39-210ENST00000459775 TXNDC12O95881 172 aa9.12□□□□□ -0.95
USP39-210ENST00000459775 CTLA4P16410 223 aa9.12□□□□□ -0.95
USP39-210ENST00000459775 EEF1B2P24534 225 aaKnown RBP9.12□□□□□ -0.95
USP39-210ENST00000459775 RPS7P62081 194 aaKnown RBP9.12□□□□□ -0.95
USP39-210ENST00000459775 ZNF91Q05481 1191 aa9.12□□□□□ -0.95
USP39-210ENST00000459775 SLAQ13239 276 aa9.12□□□□□ -0.95
USP39-210ENST00000459775 DOC2BQ14184 412 aa9.12□□□□□ -0.95
USP39-210ENST00000459775 NIPAL3Q6P499 406 aa9.12□□□□□ -0.95
USP39-210ENST00000459775 COLCA1Q6ZS62 124 aa9.12□□□□□ -0.95
USP39-210ENST00000459775 CHMP1BQ7LBR1 199 aa9.12□□□□□ -0.95
USP39-210ENST00000459775 MOGAT3Q86VF5 341 aa9.12□□□□□ -0.95
USP39-210ENST00000459775 OR4F15Q8NGB8 312 aa9.12□□□□□ -0.95
USP39-210ENST00000459775 OR6Q1Q8NGQ2 317 aa9.12□□□□□ -0.95
USP39-210ENST00000459775 NSMAFQ92636 917 aa9.12□□□□□ -0.95
USP39-210ENST00000459775 MUL1Q969V5 352 aa9.12□□□□□ -0.95
USP39-210ENST00000459775 CPNE4Q96A23 557 aaPredicted RBP9.12□□□□□ -0.95
USP39-210ENST00000459775 ZHX1-C8orf76Q96EF9 292 aa9.12□□□□□ -0.95
USP39-210ENST00000459775 TTTY10Q9BZA0 68 aa9.12□□□□□ -0.95
USP39-210ENST00000459775 PRDM14Q9GZV8 571 aa9.12□□□□□ -0.95
USP39-210ENST00000459775 SIAEQ9HAT2 523 aa9.12□□□□□ -0.95
USP39-210ENST00000459775 BAIAP2Q9UQB8 552 aa9.12□□□□□ -0.95
USP39-210ENST00000459775 RASD1Q9Y272 281 aa9.12□□□□□ -0.95
USP39-210ENST00000459775 MYRFQ9Y2G1 1151 aa9.12□□□□□ -0.95
USP39-210ENST00000459775 FLVCR1Q9Y5Y0 555 aa9.12□□□□□ -0.95
USP39-210ENST00000459775 HSPE1-MOB4S4R3N1 261 aa9.12□□□□□ -0.95
USP39-210ENST00000459775 SLC22A23A1A5C7 686 aa9.11□□□□□ -0.95
USP39-210ENST00000459775 CCDC182A6NF36 153 aa9.11□□□□□ -0.95
USP39-210ENST00000459775 TVP23AA6NH52 213 aa9.11□□□□□ -0.95
USP39-210ENST00000459775 SLC22A20A6NK97 555 aa9.11□□□□□ -0.95
USP39-210ENST00000459775 C22orf46C9J442 243 aa9.11□□□□□ -0.95
USP39-210ENST00000459775 CCRL2O00421 344 aa9.11□□□□□ -0.95
USP39-210ENST00000459775 XKRYO14609 159 aa9.11□□□□□ -0.95
USP39-210ENST00000459775 SLC16A7O60669 478 aa9.11□□□□□ -0.95
USP39-210ENST00000459775 SYNGR4O95473 234 aa9.11□□□□□ -0.95
USP39-210ENST00000459775 IFNGP01579 166 aa9.11□□□□□ -0.95
USP39-210ENST00000459775 SPI1P17947 270 aa9.11□□□□□ -0.95
USP39-210ENST00000459775 SLC2A5P22732 501 aa9.11□□□□□ -0.95
USP39-210ENST00000459775 FHITP49789 147 aa9.11□□□□□ -0.95
USP39-210ENST00000459775 CAPZA1P52907 286 aa9.11□□□□□ -0.95
USP39-210ENST00000459775 CDH11P55287 796 aa9.11□□□□□ -0.95
USP39-210ENST00000459775 IFITM2Q01629 132 aa9.11□□□□□ -0.95
USP39-210ENST00000459775 SLC3A1Q07837 685 aa9.11□□□□□ -0.95
USP39-210ENST00000459775 MEP1BQ16820 701 aa9.11□□□□□ -0.95
USP39-210ENST00000459775 ABLIM2Q6H8Q1 611 aa9.11□□□□□ -0.95
USP39-210ENST00000459775 RTL6Q6ICC9 239 aa9.11□□□□□ -0.95
USP39-210ENST00000459775 GID4Q8IVV7 300 aa9.11□□□□□ -0.95
USP39-210ENST00000459775 OR6K6Q8NGW6 343 aa9.11□□□□□ -0.95
USP39-210ENST00000459775 ST7LQ8TDW4 575 aa9.11□□□□□ -0.95
USP39-210ENST00000459775 RNF128Q8TEB7 428 aa9.11□□□□□ -0.95
USP39-210ENST00000459775 TRUB1Q8WWH5 349 aaKnown RBP9.11□□□□□ -0.95
USP39-210ENST00000459775 TMEM80Q96HE8 168 aa9.11□□□□□ -0.95
USP39-210ENST00000459775 TEAD3Q99594 435 aa9.11□□□□□ -0.95
USP39-210ENST00000459775 TEX12Q9BXU0 123 aa9.11□□□□□ -0.95
USP39-210ENST00000459775 NMNAT2Q9BZQ4 307 aa9.11□□□□□ -0.95
USP39-210ENST00000459775 TMEM160Q9NX00 188 aa9.11□□□□□ -0.95
USP39-210ENST00000459775 RPH3ALQ9UNE2 315 aa9.11□□□□□ -0.95
USP39-210ENST00000459775 RP1L1Q8IWN7 2480 aaPredicted RBP9.11□□□□□ -0.95
USP39-210ENST00000459775 TRAV34A0A0B4J273 112 aa9.11□□□□□ -0.95
USP39-210ENST00000459775 M0R3G1 203 aa9.11□□□□□ -0.95
USP39-210ENST00000459775 LRRTM2O43300 516 aa9.11□□□□□ -0.95
USP39-210ENST00000459775 GMDSO60547 372 aa9.11□□□□□ -0.95
USP39-210ENST00000459775 IGHMP01871 453 aa9.11□□□□□ -0.95
USP39-210ENST00000459775 PSKH1P11801 424 aa9.11□□□□□ -0.95
USP39-210ENST00000459775 CDAP32320 146 aa9.11□□□□□ -0.95
USP39-210ENST00000459775 NAA10P41227 235 aaPredicted RBP9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms