RNA–Protein interactions for RNA: ENST00000455883.2

CSMD3-204, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 12,485 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-204ENST00000455883 LINC01599Q8WXQ3 324 aa4.79□□□□□ -1.64
CSMD3-204ENST00000455883 NIPSNAP1Q9BPW8 284 aa4.79□□□□□ -1.64
CSMD3-204ENST00000455883 UCK1Q9HA47 277 aa4.79□□□□□ -1.64
CSMD3-204ENST00000455883 SEBOXQ9HB31 216 aaPredicted RBP4.79□□□□□ -1.64
CSMD3-204ENST00000455883 FGF20Q9NP95 211 aaPredicted RBP4.79□□□□□ -1.64
CSMD3-204ENST00000455883 AKIP1Q9NQ31 210 aa4.79□□□□□ -1.64
CSMD3-204ENST00000455883 SLC52A3Q9NQ40 469 aa4.79□□□□□ -1.64
CSMD3-204ENST00000455883 HRASLS2Q9NWW9 162 aa4.79□□□□□ -1.64
CSMD3-204ENST00000455883 IL17CQ9P0M4 197 aa4.79□□□□□ -1.64
CSMD3-204ENST00000455883 CXorf49A8MYA2 514 aaPredicted RBP4.79□□□□□ -1.64
CSMD3-204ENST00000455883 K7ERQ8 282 aa4.79□□□□□ -1.64
CSMD3-204ENST00000455883 TNFRSF10CO14798 259 aa4.79□□□□□ -1.64
CSMD3-204ENST00000455883 GEMIN2O14893 280 aaKnown RBP4.79□□□□□ -1.64
CSMD3-204ENST00000455883 GALR2O43603 387 aaPredicted RBP4.79□□□□□ -1.64
CSMD3-204ENST00000455883 TPST2O60704 377 aa4.79□□□□□ -1.64
CSMD3-204ENST00000455883 FABP9Q0Z7S8 132 aa4.79□□□□□ -1.64
CSMD3-204ENST00000455883 IL13RA2Q14627 380 aa4.79□□□□□ -1.64
CSMD3-204ENST00000455883 SLC35E3Q7Z769 313 aa4.79□□□□□ -1.64
CSMD3-204ENST00000455883 TRAPPC6BQ86SZ2 158 aa4.79□□□□□ -1.64
CSMD3-204ENST00000455883 GSX1Q9H4S2 264 aaPredicted RBP4.79□□□□□ -1.64
CSMD3-204ENST00000455883 ALKBH4Q9NXW9 302 aa4.79□□□□□ -1.64
CSMD3-204ENST00000455883 ELF5Q9UKW6 265 aaPredicted RBP4.79□□□□□ -1.64
CSMD3-204ENST00000455883 C5orf52A6NGY3 159 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 RAD52P43351 418 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 TNFRSF4P43489 277 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 AMTP48728 403 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 CARD17Q5XLA6 110 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 H2BFWTQ7Z2G1 175 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 DUSP18Q8NEJ0 188 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 SFT2D1Q8WV19 159 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 FAM117AQ9C073 453 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 HAO2Q9NYQ3 351 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 ZNF346Q9UL40 294 aaKnown RBP4.78□□□□□ -1.64
CSMD3-204ENST00000455883 CTSAP10619 480 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 SRP14P37108 136 aaKnown RBP4.78□□□□□ -1.64
CSMD3-204ENST00000455883 ALKBH1Q13686 389 aaKnown RBP4.78□□□□□ -1.64
CSMD3-204ENST00000455883 BCL7AQ4VC05 210 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 PRSS42Q7Z5A4 293 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 CCDC190Q86UF4 302 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 OR5D18Q8NGL1 313 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 OR1L1Q8NH94 360 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 HDAC8Q9BY41 377 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 IL21RQ9HBE5 538 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 RHOFQ9HBH0 211 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 CSNK1G1Q9HCP0 422 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 ZNF443Q9Y2A4 671 aaPredicted RBP4.78□□□□□ -1.64
CSMD3-204ENST00000455883 LRRC3CA6NJW4 275 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 ZNF727A8MUV8 499 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 CBR1P16152 277 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 DRD5P21918 477 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 HNRNPA2B1P22626 353 aaKnown RBP4.78□□□□□ -1.64
CSMD3-204ENST00000455883 AFMIDQ63HM1 303 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 CLEC10AQ8IUN9 316 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 GPR119Q8TDV5 335 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 C2orf50Q96LR7 162 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 ARHGAP9Q9BRR9 750 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 ACKR4Q9NPB9 350 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 PUS1Q9Y606 427 aaKnown RBP eCLIP4.78□□□□□ -1.64
CSMD3-204ENST00000455883 A0A1B0GW15 77 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 CER1O95813 267 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 HOXB2P14652 356 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 PRKACGP22612 351 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 PTGFRP43088 359 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 RUNX2Q13950 521 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 NPSR1Q6W5P4 371 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 TSEN54Q7Z6J9 526 aaKnown RBP4.78□□□□□ -1.64
CSMD3-204ENST00000455883 TMEM102Q8N9M5 508 aaPredicted RBP4.78□□□□□ -1.64
CSMD3-204ENST00000455883 ST8SIA2Q92186 375 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 C3orf30Q96M34 536 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 RNF208Q9H0X6 261 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 USP22Q9UPT9 525 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 ACP5P13686 325 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 FUT1P19526 365 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 KCNJ10P78508 379 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 FAM53BQ14153 422 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 SLC5A12Q1EHB4 618 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 TRIM61Q5EBN2 209 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 TOR2AQ5JU69 321 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 ENTPD8Q5MY95 495 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 TMEM71Q6P5X7 295 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 NHLRC1Q6VVB1 395 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 GLDNQ6ZMI3 551 aaPredicted RBP4.78□□□□□ -1.64
CSMD3-204ENST00000455883 CMTM8Q8IZV2 173 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 NLGN4XQ8N0W4 816 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 GALMQ96C23 342 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 RASD2Q96D21 266 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 SMIM12Q96EX1 92 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 TIMD4Q96H15 378 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 SMOQ99835 787 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 A0A1W2PPK0 400 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 EPXP11678 715 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 PWWP2BQ6NUJ5 590 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 UBE3DQ7Z6J8 389 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 SOD3P08294 240 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 FABP4P15090 132 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 ADH7P40394 386 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 PRDX1Q06830 199 aaKnown RBP4.78□□□□□ -1.64
CSMD3-204ENST00000455883 FAHD1Q6P587 224 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 ACOT4Q8N9L9 421 aa4.78□□□□□ -1.64
CSMD3-204ENST00000455883 OR5AK3PQ8NH89 298 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms