RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 BLVRAP53004 296 aa15.99■□□□□ 0.15
SHH-204ENST00000441114 RPS7P62081 194 aaKnown RBP15.99■□□□□ 0.15
SHH-204ENST00000441114 LINC01590Q5TEZ4 76 aa15.99■□□□□ 0.15
SHH-204ENST00000441114 CLEC2AQ6UVW9 174 aa15.99■□□□□ 0.15
SHH-204ENST00000441114 CXXC5Q7LFL8 322 aaKnown RBP15.99■□□□□ 0.15
SHH-204ENST00000441114 DCXRQ7Z4W1 244 aa15.99■□□□□ 0.15
SHH-204ENST00000441114 BBS1Q8NFJ9 593 aa15.99■□□□□ 0.15
SHH-204ENST00000441114 OR6N2Q8NGY6 317 aa15.99■□□□□ 0.15
SHH-204ENST00000441114 KLF14Q8TD94 323 aaPredicted RBP15.99■□□□□ 0.15
SHH-204ENST00000441114 IPCEF1Q8WWN9 437 aaPredicted RBP15.99■□□□□ 0.15
SHH-204ENST00000441114 ATF6BQ99941 703 aa15.99■□□□□ 0.15
SHH-204ENST00000441114 RHNO1Q9BSD3 238 aa15.99■□□□□ 0.15
SHH-204ENST00000441114 OSBPL10Q9BXB5 764 aa15.99■□□□□ 0.15
SHH-204ENST00000441114 MS4A5Q9H3V2 200 aa15.99■□□□□ 0.15
SHH-204ENST00000441114 RIBC2Q9H4K1 309 aa15.99■□□□□ 0.15
SHH-204ENST00000441114 TMEFF2Q9UIK5 374 aaPredicted RBP15.99■□□□□ 0.15
SHH-204ENST00000441114 STARD10Q9Y365 291 aa15.99■□□□□ 0.15
SHH-204ENST00000441114 ANKRD65E5RJM6 399 aa15.98■□□□□ 0.15
SHH-204ENST00000441114 RNF223E7ERA6 249 aa15.98■□□□□ 0.15
SHH-204ENST00000441114 M0R129 80 aa15.98■□□□□ 0.15
SHH-204ENST00000441114 SPATC1Q76KD6 591 aa15.98■□□□□ 0.15
SHH-204ENST00000441114 SNX33Q8WV41 574 aa15.98■□□□□ 0.15
SHH-204ENST00000441114 C18orf12Q96KH6 178 aa15.98■□□□□ 0.15
SHH-204ENST00000441114 INTS14Q96SY0 518 aa15.98■□□□□ 0.15
SHH-204ENST00000441114 PNRC2Q9NPJ4 139 aaKnown RBP15.98■□□□□ 0.15
SHH-204ENST00000441114 CENPMQ9NSP4 180 aa15.98■□□□□ 0.15
SHH-204ENST00000441114 TBCCD1Q9NVR7 557 aa15.98■□□□□ 0.15
SHH-204ENST00000441114 SLCO1C1Q9NYB5 712 aa15.98■□□□□ 0.15
SHH-204ENST00000441114 PTTG3PQ9NZH4 202 aa15.98■□□□□ 0.15
SHH-204ENST00000441114 ATPIF1Q9UII2 106 aa15.98■□□□□ 0.15
SHH-204ENST00000441114 GPR160Q9UJ42 338 aa15.98■□□□□ 0.15
SHH-204ENST00000441114 MAP1AP78559 2803 aaPredicted RBP15.97■□□□□ 0.15
SHH-204ENST00000441114 CELSR1Q9NYQ6 3014 aa15.97■□□□□ 0.15
SHH-204ENST00000441114 IGLV3-9A0A075B6K5 115 aa15.97■□□□□ 0.15
SHH-204ENST00000441114 PRKYO43930 277 aa15.97■□□□□ 0.15
SHH-204ENST00000441114 BAG2O95816 211 aa15.97■□□□□ 0.15
SHH-204ENST00000441114 POLR2IP36954 125 aaKnown RBP15.97■□□□□ 0.15
SHH-204ENST00000441114 PPP2R2BQ00005 443 aa15.97■□□□□ 0.15
SHH-204ENST00000441114 APOFQ13790 326 aa15.97■□□□□ 0.15
SHH-204ENST00000441114 EIF2B1Q14232 305 aaKnown RBP15.97■□□□□ 0.15
SHH-204ENST00000441114 TAF13Q15543 124 aa15.97■□□□□ 0.15
SHH-204ENST00000441114 RSPO1Q2MKA7 263 aaPredicted RBP15.97■□□□□ 0.15
SHH-204ENST00000441114 SLX4IPQ5VYV7 408 aa15.97■□□□□ 0.15
SHH-204ENST00000441114 NAA40Q86UY6 237 aa15.97■□□□□ 0.15
SHH-204ENST00000441114 MAPK1IP1LQ8NDC0 245 aa15.97■□□□□ 0.15
SHH-204ENST00000441114 OR10S1Q8NGN2 331 aa15.97■□□□□ 0.15
SHH-204ENST00000441114 NEU4Q8WWR8 484 aaPredicted RBP15.97■□□□□ 0.15
SHH-204ENST00000441114 FAM168AQ92567 244 aa15.97■□□□□ 0.15
SHH-204ENST00000441114 GTF3AQ92664 365 aaKnown RBP15.97■□□□□ 0.15
SHH-204ENST00000441114 STMN2Q93045 179 aa15.97■□□□□ 0.15
SHH-204ENST00000441114 DCLRE1CQ96SD1 692 aaKnown RBP15.97■□□□□ 0.15
SHH-204ENST00000441114 RBM4BQ9BQ04 359 aaKnown RBP15.97■□□□□ 0.15
SHH-204ENST00000441114 PRRG3Q9BZD7 231 aa15.97■□□□□ 0.15
SHH-204ENST00000441114 DLL4Q9NR61 685 aa15.97■□□□□ 0.15
SHH-204ENST00000441114 ENOPH1Q9UHY7 261 aa15.97■□□□□ 0.15
SHH-204ENST00000441114 F8P00451 2351 aa15.96■□□□□ 0.15
SHH-204ENST00000441114 IGHV4-30-2A0A087WSY4 118 aa15.96■□□□□ 0.15
SHH-204ENST00000441114 ZAR1LA6NP61 321 aa15.96■□□□□ 0.15
SHH-204ENST00000441114 EI24O14681 340 aa15.96■□□□□ 0.15
SHH-204ENST00000441114 SELENOFO60613 162 aa15.96■□□□□ 0.15
SHH-204ENST00000441114 ICMTO60725 284 aa15.96■□□□□ 0.15
SHH-204ENST00000441114 IGHV3-13P01766 116 aa15.96■□□□□ 0.15
SHH-204ENST00000441114 INHBBP09529 407 aa15.96■□□□□ 0.15
SHH-204ENST00000441114 PDLIM4P50479 330 aa15.96■□□□□ 0.15
SHH-204ENST00000441114 ECH1Q13011 328 aa15.96■□□□□ 0.15
SHH-204ENST00000441114 MOGQ16653 247 aa15.96■□□□□ 0.15
SHH-204ENST00000441114 ZSCAN26Q16670 478 aa15.96■□□□□ 0.15
SHH-204ENST00000441114 TMEM255AQ5JRV8 349 aa15.96■□□□□ 0.15
SHH-204ENST00000441114 MBNL2Q5VZF2 373 aaKnown RBP15.96■□□□□ 0.15
SHH-204ENST00000441114 DNM1P46Q6ZS02 220 aa15.96■□□□□ 0.15
SHH-204ENST00000441114 DPY19L4Q7Z388 723 aa15.96■□□□□ 0.15
SHH-204ENST00000441114 C1orf174Q8IYL3 243 aa15.96■□□□□ 0.15
SHH-204ENST00000441114 TCEANCQ8N8B7 351 aa15.96■□□□□ 0.15
SHH-204ENST00000441114 SLAMF6Q96DU3 332 aa15.96■□□□□ 0.15
SHH-204ENST00000441114 SMR3AQ99954 134 aa15.96■□□□□ 0.15
SHH-204ENST00000441114 HIVEP1P15822 2718 aa15.95■□□□□ 0.14
SHH-204ENST00000441114 LYNX1G3V0Z9 82 aa15.95■□□□□ 0.14
SHH-204ENST00000441114 PRODHO43272 600 aa15.95■□□□□ 0.14
SHH-204ENST00000441114 TLX2O43763 284 aaPredicted RBP15.95■□□□□ 0.14
SHH-204ENST00000441114 TIMM8AO60220 97 aaPredicted RBP15.95■□□□□ 0.14
SHH-204ENST00000441114 LCATP04180 440 aa15.95■□□□□ 0.14
SHH-204ENST00000441114 ACSM4P0C7M7 580 aa15.95■□□□□ 0.14
SHH-204ENST00000441114 LYNX1P0DP58 116 aa15.95■□□□□ 0.14
SHH-204ENST00000441114 DAOP14920 347 aa15.95■□□□□ 0.14
SHH-204ENST00000441114 NAA10P41227 235 aaPredicted RBP15.95■□□□□ 0.14
SHH-204ENST00000441114 RGS6P49758 472 aa15.95■□□□□ 0.14
SHH-204ENST00000441114 TPTEP56180 551 aa15.95■□□□□ 0.14
SHH-204ENST00000441114 DSCR9P59020 149 aa15.95■□□□□ 0.14
SHH-204ENST00000441114 GABPB1Q06547 395 aaPredicted RBP15.95■□□□□ 0.14
SHH-204ENST00000441114 HLXQ14774 488 aaPredicted RBP15.95■□□□□ 0.14
SHH-204ENST00000441114 ZIK1Q3SY52 487 aaPredicted RBP15.95■□□□□ 0.14
SHH-204ENST00000441114 TEX30Q5JUR7 227 aa15.95■□□□□ 0.14
SHH-204ENST00000441114 C12orf73Q69YU5 71 aa15.95■□□□□ 0.14
SHH-204ENST00000441114 BCDIN3DQ7Z5W3 292 aaKnown RBP15.95■□□□□ 0.14
SHH-204ENST00000441114 OR5L1Q8NGL2 311 aa15.95■□□□□ 0.14
SHH-204ENST00000441114 APOBEC3DQ96AK3 386 aaPredicted RBP15.95■□□□□ 0.14
SHH-204ENST00000441114 CMBLQ96DG6 245 aa15.95■□□□□ 0.14
SHH-204ENST00000441114 IL4I1Q96RQ9 567 aa15.95■□□□□ 0.14
SHH-204ENST00000441114 COPS4Q9BT78 406 aa15.95■□□□□ 0.14
SHH-204ENST00000441114 REG4Q9BYZ8 158 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms