RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 ITLN1Q8WWA0 313 aa9.74□□□□□ -0.85
SQSTM1-203ENST00000422245 SLC7A6Q92536 515 aa9.74□□□□□ -0.85
SQSTM1-203ENST00000422245 GCDHQ92947 438 aaPredicted RBP9.74□□□□□ -0.85
SQSTM1-203ENST00000422245 PTP4A1Q93096 173 aa9.74□□□□□ -0.85
SQSTM1-203ENST00000422245 POP5Q969H6 163 aaKnown RBP9.74□□□□□ -0.85
SQSTM1-203ENST00000422245 APOBEC3DQ96AK3 386 aaPredicted RBP9.74□□□□□ -0.85
SQSTM1-203ENST00000422245 C7orf34Q96L11 122 aa9.74□□□□□ -0.85
SQSTM1-203ENST00000422245 OR2V2Q96R30 315 aa9.74□□□□□ -0.85
SQSTM1-203ENST00000422245 SIGLEC11Q96RL6 698 aa9.74□□□□□ -0.85
SQSTM1-203ENST00000422245 COQ7Q99807 217 aa9.74□□□□□ -0.85
SQSTM1-203ENST00000422245 FUZQ9BT04 418 aa9.74□□□□□ -0.85
SQSTM1-203ENST00000422245 MYLK2Q9H1R3 596 aa9.74□□□□□ -0.85
SQSTM1-203ENST00000422245 PATZ1Q9HBE1 687 aaKnown RBP9.74□□□□□ -0.85
SQSTM1-203ENST00000422245 EGFL7Q9UHF1 273 aa9.74□□□□□ -0.85
SQSTM1-203ENST00000422245 IL20RAQ9UHF4 553 aa9.74□□□□□ -0.85
SQSTM1-203ENST00000422245 POLR3KQ9Y2Y1 108 aaPredicted RBP9.74□□□□□ -0.85
SQSTM1-203ENST00000422245 IGLV1-36A0A0B4J1U3 117 aa9.73□□□□□ -0.85
SQSTM1-203ENST00000422245 TMEM89A2RUT3 159 aa9.73□□□□□ -0.85
SQSTM1-203ENST00000422245 F5H0A9 414 aaPredicted RBP9.73□□□□□ -0.85
SQSTM1-203ENST00000422245 IMPA2O14732 288 aa9.73□□□□□ -0.85
SQSTM1-203ENST00000422245 DBHP09172 617 aa9.73□□□□□ -0.85
SQSTM1-203ENST00000422245 CPT2P23786 658 aa9.73□□□□□ -0.85
SQSTM1-203ENST00000422245 FPR3P25089 353 aa9.73□□□□□ -0.85
SQSTM1-203ENST00000422245 ZFP36P26651 326 aaKnown RBP9.73□□□□□ -0.85
SQSTM1-203ENST00000422245 SLC6A6P31641 620 aa9.73□□□□□ -0.85
SQSTM1-203ENST00000422245 ERFP50548 548 aa9.73□□□□□ -0.85
SQSTM1-203ENST00000422245 COX10Q12887 443 aa9.73□□□□□ -0.85
SQSTM1-203ENST00000422245 ARMCX4Q5H9R4 360 aa9.73□□□□□ -0.85
SQSTM1-203ENST00000422245 OTPQ5XKR4 325 aa9.73□□□□□ -0.85
SQSTM1-203ENST00000422245 JAZF1Q86VZ6 243 aa9.73□□□□□ -0.85
SQSTM1-203ENST00000422245 LRRC28Q86X40 367 aaPredicted RBP9.73□□□□□ -0.85
SQSTM1-203ENST00000422245 FAM86B1Q8N7N1 296 aa9.73□□□□□ -0.85
SQSTM1-203ENST00000422245 GJC3Q8NFK1 279 aa9.73□□□□□ -0.85
SQSTM1-203ENST00000422245 OR13G1Q8NGZ3 307 aa9.73□□□□□ -0.85
SQSTM1-203ENST00000422245 OR52J3Q8NH60 311 aa9.73□□□□□ -0.85
SQSTM1-203ENST00000422245 ZNF582Q96NG8 517 aaPredicted RBP9.73□□□□□ -0.85
SQSTM1-203ENST00000422245 GORASP2Q9H8Y8 452 aa9.73□□□□□ -0.85
SQSTM1-203ENST00000422245 NTN4Q9HB63 628 aa9.73□□□□□ -0.85
SQSTM1-203ENST00000422245 ADA2Q9NZK5 511 aa9.73□□□□□ -0.85
SQSTM1-203ENST00000422245 OR5V1Q9UGF6 321 aa9.73□□□□□ -0.85
SQSTM1-203ENST00000422245 MAGEL2Q9UJ55 1249 aa9.73□□□□□ -0.85
SQSTM1-203ENST00000422245 LRCH1Q9Y2L9 728 aa9.73□□□□□ -0.85
SQSTM1-203ENST00000422245 LHFPL6Q9Y693 200 aa9.73□□□□□ -0.85
SQSTM1-203ENST00000422245 ARHGAP32A7KAX9 2087 aa9.72□□□□□ -0.85
SQSTM1-203ENST00000422245 TMEM178BH3BS89 294 aa9.72□□□□□ -0.85
SQSTM1-203ENST00000422245 ARPC3O15145 178 aa9.72□□□□□ -0.85
SQSTM1-203ENST00000422245 DIRAS1O95057 198 aa9.72□□□□□ -0.85
SQSTM1-203ENST00000422245 PPP1R3DO95685 299 aa9.72□□□□□ -0.85
SQSTM1-203ENST00000422245 RENP00797 406 aa9.72□□□□□ -0.85
SQSTM1-203ENST00000422245 SEMG1P04279 462 aa9.72□□□□□ -0.85
SQSTM1-203ENST00000422245 SELEP16581 610 aa9.72□□□□□ -0.85
SQSTM1-203ENST00000422245 ZNF12P17014 697 aa9.72□□□□□ -0.85
SQSTM1-203ENST00000422245 IFNGR2P38484 337 aa9.72□□□□□ -0.85
SQSTM1-203ENST00000422245 CDKN2AP42771 156 aaKnown RBP9.72□□□□□ -0.85
SQSTM1-203ENST00000422245 SLC6A9P48067 706 aa9.72□□□□□ -0.85
SQSTM1-203ENST00000422245 CENPAP49450 140 aa9.72□□□□□ -0.85
SQSTM1-203ENST00000422245 SRP9P49458 86 aaKnown RBP9.72□□□□□ -0.85
SQSTM1-203ENST00000422245 HIST1H3AP68431 136 aa9.72□□□□□ -0.85
SQSTM1-203ENST00000422245 SPIBQ01892 262 aa9.72□□□□□ -0.85
SQSTM1-203ENST00000422245 ZNF154Q13106 437 aa9.72□□□□□ -0.85
SQSTM1-203ENST00000422245 HNRNPA0Q13151 305 aaKnown RBP9.72□□□□□ -0.85
SQSTM1-203ENST00000422245 HLXQ14774 488 aaPredicted RBP9.72□□□□□ -0.85
SQSTM1-203ENST00000422245 ESCO2Q56NI9 601 aa9.72□□□□□ -0.85
SQSTM1-203ENST00000422245 HIST2H3PS2Q5TEC6 136 aa9.72□□□□□ -0.85
SQSTM1-203ENST00000422245 OR2T2Q6IF00 324 aa9.72□□□□□ -0.85
SQSTM1-203ENST00000422245 LEG1Q6P5S2 330 aa9.72□□□□□ -0.85
SQSTM1-203ENST00000422245 RBMS3Q6XE24 437 aaKnown RBP9.72□□□□□ -0.85
SQSTM1-203ENST00000422245 HIST2H3AQ71DI3 136 aa9.72□□□□□ -0.85
SQSTM1-203ENST00000422245 ZSCAN2Q7Z7L9 614 aaPredicted RBP9.72□□□□□ -0.85
SQSTM1-203ENST00000422245 OR5AS1Q8N127 324 aa9.72□□□□□ -0.85
SQSTM1-203ENST00000422245 C3orf56Q8N813 242 aa9.72□□□□□ -0.85
SQSTM1-203ENST00000422245 ATG16L2Q8NAA4 619 aa9.72□□□□□ -0.85
SQSTM1-203ENST00000422245 SLC26A10Q8NG04 563 aa9.72□□□□□ -0.85
SQSTM1-203ENST00000422245 OR8G5Q8NG78 346 aa9.72□□□□□ -0.85
SQSTM1-203ENST00000422245 OR10AD1Q8NGE0 317 aa9.72□□□□□ -0.85
SQSTM1-203ENST00000422245 DVL3Q92997 716 aaPredicted RBP9.72□□□□□ -0.85
SQSTM1-203ENST00000422245 MCUR1Q96AQ8 359 aa9.72□□□□□ -0.85
SQSTM1-203ENST00000422245 MEGF10Q96KG7 1140 aa9.72□□□□□ -0.85
SQSTM1-203ENST00000422245 ERMAPQ96PL5 475 aaPredicted RBP9.72□□□□□ -0.85
SQSTM1-203ENST00000422245 GPA33Q99795 319 aa9.72□□□□□ -0.85
SQSTM1-203ENST00000422245 MRI1Q9BV20 369 aa9.72□□□□□ -0.85
SQSTM1-203ENST00000422245 NSRP1Q9H0G5 558 aaKnown RBP9.72□□□□□ -0.85
SQSTM1-203ENST00000422245 OR52D1Q9H346 318 aa9.72□□□□□ -0.85
SQSTM1-203ENST00000422245 ZMAT3Q9HA38 289 aaKnown RBP9.72□□□□□ -0.85
SQSTM1-203ENST00000422245 GCM1Q9NP62 436 aa9.72□□□□□ -0.85
SQSTM1-203ENST00000422245 PTTG3PQ9NZH4 202 aa9.72□□□□□ -0.85
SQSTM1-203ENST00000422245 AUP1Q9Y679 476 aa9.72□□□□□ -0.85
SQSTM1-203ENST00000422245 LRRC30A6NM36 301 aa9.71□□□□□ -0.86
SQSTM1-203ENST00000422245 CEACAM18A8MTB9 384 aa9.71□□□□□ -0.86
SQSTM1-203ENST00000422245 IQCF6A8MYZ5 107 aa9.71□□□□□ -0.86
SQSTM1-203ENST00000422245 DCTN6O00399 190 aa9.71□□□□□ -0.86
SQSTM1-203ENST00000422245 GADD45GO95257 159 aa9.71□□□□□ -0.86
SQSTM1-203ENST00000422245 HSD17B1P14061 328 aa9.71□□□□□ -0.86
SQSTM1-203ENST00000422245 UBA52P62987 128 aaKnown RBP9.71□□□□□ -0.86
SQSTM1-203ENST00000422245 ECH1Q13011 328 aa9.71□□□□□ -0.86
SQSTM1-203ENST00000422245 MEP1BQ16820 701 aa9.71□□□□□ -0.86
SQSTM1-203ENST00000422245 ZNF181Q2M3W8 571 aa9.71□□□□□ -0.86
SQSTM1-203ENST00000422245 RFX4Q33E94 735 aa9.71□□□□□ -0.86
SQSTM1-203ENST00000422245 KRTAP27-1Q3LI81 207 aa9.71□□□□□ -0.86
SQSTM1-203ENST00000422245 SLC36A3Q495N2 470 aa9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms