RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 C8orf82Q6P1X6 216 aaPredicted RBP9.72□□□□□ -0.85
USP4-204ENST00000416417 ARPINQ7Z6K5 226 aa9.72□□□□□ -0.85
USP4-204ENST00000416417 CYP4Z1Q86W10 505 aa9.72□□□□□ -0.85
USP4-204ENST00000416417 C1orf174Q8IYL3 243 aa9.72□□□□□ -0.85
USP4-204ENST00000416417 SPICQ8N5J4 248 aa9.72□□□□□ -0.85
USP4-204ENST00000416417 RNF148Q8N7C7 305 aa9.72□□□□□ -0.85
USP4-204ENST00000416417 C19orf18Q8NEA5 215 aa9.72□□□□□ -0.85
USP4-204ENST00000416417 PTP4A1Q93096 173 aa9.72□□□□□ -0.85
USP4-204ENST00000416417 MEGF10Q96KG7 1140 aa9.72□□□□□ -0.85
USP4-204ENST00000416417 C1orf147Q96MC9 270 aaPredicted RBP9.72□□□□□ -0.85
USP4-204ENST00000416417 KCTD14Q9BQ13 255 aaPredicted RBP9.72□□□□□ -0.85
USP4-204ENST00000416417 GCM1Q9NP62 436 aa9.72□□□□□ -0.85
USP4-204ENST00000416417 NRIP3Q9NQ35 241 aa9.72□□□□□ -0.85
USP4-204ENST00000416417 DDX28Q9NUL7 540 aaKnown RBP9.72□□□□□ -0.85
USP4-204ENST00000416417 MRGBPQ9NV56 204 aa9.72□□□□□ -0.85
USP4-204ENST00000416417 NDUFAF4Q9P032 175 aa9.72□□□□□ -0.85
USP4-204ENST00000416417 IL19Q9UHD0 177 aa9.72□□□□□ -0.85
USP4-204ENST00000416417 NUP50Q9UKX7 468 aa9.72□□□□□ -0.85
USP4-204ENST00000416417 INSIG2Q9Y5U4 225 aa9.72□□□□□ -0.85
USP4-204ENST00000416417 MDFIC2A0A1B0GVS7 189 aa9.71□□□□□ -0.86
USP4-204ENST00000416417 UNC119BA6NIH7 251 aa9.71□□□□□ -0.86
USP4-204ENST00000416417 F5H5P2 479 aa9.71□□□□□ -0.86
USP4-204ENST00000416417 MLNRO43193 412 aa9.71□□□□□ -0.86
USP4-204ENST00000416417 HLA-DPB1P04440 258 aa9.71□□□□□ -0.86
USP4-204ENST00000416417 IGHV4-38-2P0DP08 117 aa9.71□□□□□ -0.86
USP4-204ENST00000416417 TNFRSF1AP19438 455 aa9.71□□□□□ -0.86
USP4-204ENST00000416417 CD80P33681 288 aa9.71□□□□□ -0.86
USP4-204ENST00000416417 PMELP40967 661 aa9.71□□□□□ -0.86
USP4-204ENST00000416417 TMEM155Q4W5P6 130 aa9.71□□□□□ -0.86
USP4-204ENST00000416417 NAA40Q86UY6 237 aa9.71□□□□□ -0.86
USP4-204ENST00000416417 MOGAT3Q86VF5 341 aa9.71□□□□□ -0.86
USP4-204ENST00000416417 LINC00346Q8IVM7 164 aa9.71□□□□□ -0.86
USP4-204ENST00000416417 FAM156AQ8NDB6 213 aa9.71□□□□□ -0.86
USP4-204ENST00000416417 FN3KQ9H479 309 aa9.71□□□□□ -0.86
USP4-204ENST00000416417 SRA1Q9HD15 236 aaKnown RBP9.71□□□□□ -0.86
USP4-204ENST00000416417 VSX1Q9NZR4 365 aaPredicted RBP9.71□□□□□ -0.86
USP4-204ENST00000416417 RPS6KA6Q9UK32 745 aa9.71□□□□□ -0.86
USP4-204ENST00000416417 TMEM5Q9Y2B1 443 aa9.71□□□□□ -0.86
USP4-204ENST00000416417 LHFPL6Q9Y693 200 aa9.71□□□□□ -0.86
USP4-204ENST00000416417 MEGF8Q7Z7M0 2845 aa9.7□□□□□ -0.86
USP4-204ENST00000416417 WNT2P09544 360 aa9.7□□□□□ -0.86
USP4-204ENST00000416417 RAC2P15153 192 aa9.7□□□□□ -0.86
USP4-204ENST00000416417 PSME3P61289 254 aa9.7□□□□□ -0.86
USP4-204ENST00000416417 LSM6P62312 80 aaKnown RBP9.7□□□□□ -0.86
USP4-204ENST00000416417 BAMBIQ13145 260 aa9.7□□□□□ -0.86
USP4-204ENST00000416417 RSPO1Q2MKA7 263 aaPredicted RBP9.7□□□□□ -0.86
USP4-204ENST00000416417 ESCO2Q56NI9 601 aa9.7□□□□□ -0.86
USP4-204ENST00000416417 LEG1Q6P5S2 330 aa9.7□□□□□ -0.86
USP4-204ENST00000416417 RBMS3Q6XE24 437 aaKnown RBP9.7□□□□□ -0.86
USP4-204ENST00000416417 OR8G5Q8NG78 346 aa9.7□□□□□ -0.86
USP4-204ENST00000416417 POP5Q969H6 163 aaKnown RBP9.7□□□□□ -0.86
USP4-204ENST00000416417 C7orf34Q96L11 122 aa9.7□□□□□ -0.86
USP4-204ENST00000416417 ERMAPQ96PL5 475 aaPredicted RBP9.7□□□□□ -0.86
USP4-204ENST00000416417 HOPXQ9BPY8 73 aaPredicted RBP9.7□□□□□ -0.86
USP4-204ENST00000416417 MRI1Q9BV20 369 aa9.7□□□□□ -0.86
USP4-204ENST00000416417 EFCAB1Q9HAE3 211 aa9.7□□□□□ -0.86
USP4-204ENST00000416417 NTN4Q9HB63 628 aa9.7□□□□□ -0.86
USP4-204ENST00000416417 TMEM165Q9HC07 324 aa9.7□□□□□ -0.86
USP4-204ENST00000416417 AURKCQ9UQB9 309 aa9.7□□□□□ -0.86
USP4-204ENST00000416417 AP3M1Q9Y2T2 418 aa9.7□□□□□ -0.86
USP4-204ENST00000416417 FAM32AQ9Y421 112 aaKnown RBP9.7□□□□□ -0.86
USP4-204ENST00000416417 WNK2Q9Y3S1 2297 aa9.69□□□□□ -0.86
USP4-204ENST00000416417 PPIAL4EA0A075B759 164 aa9.69□□□□□ -0.86
USP4-204ENST00000416417 IGLV1-36A0A0B4J1U3 117 aa9.69□□□□□ -0.86
USP4-204ENST00000416417 PPIAL4CA0A0B4J2A2 164 aa9.69□□□□□ -0.86
USP4-204ENST00000416417 A0A1W2PRQ8 180 aa9.69□□□□□ -0.86
USP4-204ENST00000416417 PPIAL4DF5H284 164 aa9.69□□□□□ -0.86
USP4-204ENST00000416417 SLC22A2O15244 555 aa9.69□□□□□ -0.86
USP4-204ENST00000416417 SURF4O15260 269 aa9.69□□□□□ -0.86
USP4-204ENST00000416417 KCNAB3O43448 404 aa9.69□□□□□ -0.86
USP4-204ENST00000416417 AHCYL1O43865 530 aa9.69□□□□□ -0.86
USP4-204ENST00000416417 PPIAL4FP0DN26 164 aa9.69□□□□□ -0.86
USP4-204ENST00000416417 RPS2P15880 293 aaKnown RBP9.69□□□□□ -0.86
USP4-204ENST00000416417 ANOS1P23352 680 aa9.69□□□□□ -0.86
USP4-204ENST00000416417 MSX2P35548 267 aaPredicted RBP9.69□□□□□ -0.86
USP4-204ENST00000416417 MDH2P40926 338 aaKnown RBP9.69□□□□□ -0.86
USP4-204ENST00000416417 DGCR6Q14129 220 aa9.69□□□□□ -0.86
USP4-204ENST00000416417 GPR139Q6DWJ6 353 aa9.69□□□□□ -0.86
USP4-204ENST00000416417 GLYATQ6IB77 296 aa9.69□□□□□ -0.86
USP4-204ENST00000416417 LYPD2Q6UXB3 125 aa9.69□□□□□ -0.86
USP4-204ENST00000416417 FBXW12Q6X9E4 464 aa9.69□□□□□ -0.86
USP4-204ENST00000416417 CFAP77Q6ZQR2 320 aa9.69□□□□□ -0.86
USP4-204ENST00000416417 DOK3Q7L591 496 aa9.69□□□□□ -0.86
USP4-204ENST00000416417 KLBQ86Z14 1044 aa9.69□□□□□ -0.86
USP4-204ENST00000416417 OR4K13Q8NH42 304 aa9.69□□□□□ -0.86
USP4-204ENST00000416417 ZNF582Q96NG8 517 aaPredicted RBP9.69□□□□□ -0.86
USP4-204ENST00000416417 GPX7Q96SL4 187 aaPredicted RBP9.69□□□□□ -0.86
USP4-204ENST00000416417 NMNAT3Q96T66 252 aa9.69□□□□□ -0.86
USP4-204ENST00000416417 TMEM246Q9BRR3 403 aa9.69□□□□□ -0.86
USP4-204ENST00000416417 WACQ9BTA9 647 aa9.69□□□□□ -0.86
USP4-204ENST00000416417 NDEL1Q9GZM8 345 aa9.69□□□□□ -0.86
USP4-204ENST00000416417 MS4A7Q9GZW8 240 aaPredicted RBP9.69□□□□□ -0.86
USP4-204ENST00000416417 ANKRD19PQ9H560 264 aa9.69□□□□□ -0.86
USP4-204ENST00000416417 OR5V1Q9UGF6 321 aa9.69□□□□□ -0.86
USP4-204ENST00000416417 B9D1Q9UPM9 204 aa9.69□□□□□ -0.86
USP4-204ENST00000416417 POLR3KQ9Y2Y1 108 aaPredicted RBP9.69□□□□□ -0.86
USP4-204ENST00000416417 A8MXK9 166 aa9.68□□□□□ -0.86
USP4-204ENST00000416417 TMPRSS2O15393 492 aa9.68□□□□□ -0.86
USP4-204ENST00000416417 HKR1P10072 659 aa9.68□□□□□ -0.86
USP4-204ENST00000416417 PRTN3P24158 256 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms