RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 LIX1LQ8IVB5 337 aa11.94□□□□□ -0.5
VPS54-203ENST00000409558 UCN2Q96RP3 112 aa11.94□□□□□ -0.5
VPS54-203ENST00000409558 LEUTXA8MZ59 168 aa11.94□□□□□ -0.5
VPS54-203ENST00000409558 TRAPPC6AO75865 159 aa11.94□□□□□ -0.5
VPS54-203ENST00000409558 TCEAL6Q6IPX3 200 aa11.94□□□□□ -0.5
VPS54-203ENST00000409558 ZNF704Q6ZNC4 412 aaPredicted RBP11.94□□□□□ -0.5
VPS54-203ENST00000409558 GABRG1Q8N1C3 465 aa11.94□□□□□ -0.5
VPS54-203ENST00000409558 TCEAL3Q969E4 200 aa11.94□□□□□ -0.5
VPS54-203ENST00000409558 EXOSC3Q9NQT5 275 aaKnown RBP11.94□□□□□ -0.5
VPS54-203ENST00000409558 ICE1Q9Y2F5 2266 aa11.94□□□□□ -0.5
VPS54-203ENST00000409558 EML6Q6ZMW3 1958 aa11.94□□□□□ -0.5
VPS54-203ENST00000409558 TRBV5-5A0A0J9YX44 114 aa11.94□□□□□ -0.5
VPS54-203ENST00000409558 IGHV5-10-1A0A0J9YXX1 117 aa11.94□□□□□ -0.5
VPS54-203ENST00000409558 ZNF736B4DX44 427 aaPredicted RBP11.94□□□□□ -0.5
VPS54-203ENST00000409558 AVPR2P30518 371 aa11.94□□□□□ -0.5
VPS54-203ENST00000409558 OTX2P32243 289 aa11.94□□□□□ -0.5
VPS54-203ENST00000409558 P2RX3P56373 397 aa11.94□□□□□ -0.5
VPS54-203ENST00000409558 PDCD1Q15116 288 aa11.94□□□□□ -0.5
VPS54-203ENST00000409558 TMEM81Q6P7N7 255 aa11.94□□□□□ -0.5
VPS54-203ENST00000409558 OGFOD3Q6PK18 319 aa11.94□□□□□ -0.5
VPS54-203ENST00000409558 GLDNQ6ZMI3 551 aaPredicted RBP11.94□□□□□ -0.5
VPS54-203ENST00000409558 TRAPPC6BQ86SZ2 158 aa11.94□□□□□ -0.5
VPS54-203ENST00000409558 ZNF584Q8IVC4 421 aa11.94□□□□□ -0.5
VPS54-203ENST00000409558 ZNF519Q8TB69 540 aa11.94□□□□□ -0.5
VPS54-203ENST00000409558 DDIT4LQ96D03 193 aa11.94□□□□□ -0.5
VPS54-203ENST00000409558 ST6GALNAC5Q9BVH7 336 aa11.94□□□□□ -0.5
VPS54-203ENST00000409558 ACTR6Q9GZN1 396 aa11.94□□□□□ -0.5
VPS54-203ENST00000409558 SDCBPO00560 298 aaPredicted RBP11.93□□□□□ -0.5
VPS54-203ENST00000409558 QDPRP09417 244 aa11.93□□□□□ -0.5
VPS54-203ENST00000409558 AKAIN1P0CW23 69 aa11.93□□□□□ -0.5
VPS54-203ENST00000409558 PNLIPP16233 465 aa11.93□□□□□ -0.5
VPS54-203ENST00000409558 GUCA1AP43080 201 aaPredicted RBP11.93□□□□□ -0.5
VPS54-203ENST00000409558 RBMS2Q15434 407 aaKnown RBP11.93□□□□□ -0.5
VPS54-203ENST00000409558 ZNF767PQ75MW2 155 aa11.93□□□□□ -0.5
VPS54-203ENST00000409558 SUN5Q8TC36 379 aa11.93□□□□□ -0.5
VPS54-203ENST00000409558 CHST11Q9NPF2 352 aa11.93□□□□□ -0.5
VPS54-203ENST00000409558 MYOTQ9UBF9 498 aa11.93□□□□□ -0.5
VPS54-203ENST00000409558 UBQLN2Q9UHD9 624 aa11.93□□□□□ -0.5
VPS54-203ENST00000409558 H3BMH7 237 aa11.93□□□□□ -0.5
VPS54-203ENST00000409558 SLC17A2O00624 439 aa11.93□□□□□ -0.5
VPS54-203ENST00000409558 ACSM4P0C7M7 580 aa11.93□□□□□ -0.5
VPS54-203ENST00000409558 SNU13P55769 128 aaKnown RBP11.93□□□□□ -0.5
VPS54-203ENST00000409558 TMEM71Q6P5X7 295 aa11.93□□□□□ -0.5
VPS54-203ENST00000409558 CPEB2Q7Z5Q1 589 aaKnown RBP11.93□□□□□ -0.5
VPS54-203ENST00000409558 IFT46Q9NQC8 304 aa11.93□□□□□ -0.5
VPS54-203ENST00000409558 NBEAQ8NFP9 2946 aa11.93□□□□□ -0.5
VPS54-203ENST00000409558 BLACEA4D250 179 aa11.93□□□□□ -0.5
VPS54-203ENST00000409558 H7C417 338 aa11.93□□□□□ -0.5
VPS54-203ENST00000409558 TSPAN4O14817 238 aa11.93□□□□□ -0.5
VPS54-203ENST00000409558 DXOO77932 396 aaKnown RBP11.93□□□□□ -0.5
VPS54-203ENST00000409558 MT-ATP6P00846 226 aa11.93□□□□□ -0.5
VPS54-203ENST00000409558 HLA-AP01891 365 aaKnown RBP11.93□□□□□ -0.5
VPS54-203ENST00000409558 LAP3P28838 519 aa11.93□□□□□ -0.5
VPS54-203ENST00000409558 ARFRP1Q13795 201 aa11.93□□□□□ -0.5
VPS54-203ENST00000409558 EMC4Q5J8M3 183 aa11.93□□□□□ -0.5
VPS54-203ENST00000409558 ANKRD16Q6P6B7 361 aa11.93□□□□□ -0.5
VPS54-203ENST00000409558 BRICD5Q6PL45 260 aa11.93□□□□□ -0.5
VPS54-203ENST00000409558 SPEM1Q8N4L4 309 aa11.93□□□□□ -0.5
VPS54-203ENST00000409558 MVB12AQ96EY5 273 aa11.93□□□□□ -0.5
VPS54-203ENST00000409558 CXorf58Q96LI9 332 aa11.93□□□□□ -0.5
VPS54-203ENST00000409558 MTFP1Q9UDX5 166 aa11.93□□□□□ -0.5
VPS54-203ENST00000409558 NCOA6Q14686 2063 aaPredicted RBP11.93□□□□□ -0.5
VPS54-203ENST00000409558 NDUFB6O95139 128 aa11.92□□□□□ -0.5
VPS54-203ENST00000409558 IGF2P01344 180 aa11.92□□□□□ -0.5
VPS54-203ENST00000409558 IFNA6P05013 189 aa11.92□□□□□ -0.5
VPS54-203ENST00000409558 DBHP09172 617 aa11.92□□□□□ -0.5
VPS54-203ENST00000409558 ACHEP22303 614 aa11.92□□□□□ -0.5
VPS54-203ENST00000409558 STARP49675 285 aa11.92□□□□□ -0.5
VPS54-203ENST00000409558 YRDCQ86U90 279 aaKnown RBP11.92□□□□□ -0.5
VPS54-203ENST00000409558 CADM4Q8NFZ8 388 aa11.92□□□□□ -0.5
VPS54-203ENST00000409558 PIGTQ969N2 578 aa11.92□□□□□ -0.5
VPS54-203ENST00000409558 TWSG1Q9GZX9 223 aa11.92□□□□□ -0.5
VPS54-203ENST00000409558 NARFLQ9H6Q4 476 aa11.92□□□□□ -0.5
VPS54-203ENST00000409558 GPN3Q9UHW5 284 aaPredicted RBP11.92□□□□□ -0.5
VPS54-203ENST00000409558 CRTAPO75718 401 aaPredicted RBP11.92□□□□□ -0.5
VPS54-203ENST00000409558 NFYAP23511 347 aaPredicted RBP11.92□□□□□ -0.5
VPS54-203ENST00000409558 NKAPLQ5M9Q1 402 aa11.92□□□□□ -0.5
VPS54-203ENST00000409558 RHBDD2Q6NTF9 364 aa11.92□□□□□ -0.5
VPS54-203ENST00000409558 FJX1Q86VR8 437 aa11.92□□□□□ -0.5
VPS54-203ENST00000409558 PBOV1Q9GZY1 135 aa11.92□□□□□ -0.5
VPS54-203ENST00000409558 GPR84Q9NQS5 396 aa11.92□□□□□ -0.5
VPS54-203ENST00000409558 TMEM82A0PJX8 343 aa11.92□□□□□ -0.5
VPS54-203ENST00000409558 C5orf51A6NDU8 294 aa11.92□□□□□ -0.5
VPS54-203ENST00000409558 CCNOP22674 350 aa11.92□□□□□ -0.5
VPS54-203ENST00000409558 MCHR2Q969V1 340 aa11.92□□□□□ -0.5
VPS54-203ENST00000409558 RADILQ96JH8 1075 aa11.92□□□□□ -0.5
VPS54-203ENST00000409558 LRFN5Q96NI6 719 aa11.92□□□□□ -0.5
VPS54-203ENST00000409558 GLTPQ9NZD2 209 aa11.92□□□□□ -0.5
VPS54-203ENST00000409558 GDF2Q9UK05 429 aaPredicted RBP11.92□□□□□ -0.5
VPS54-203ENST00000409558 MAB21L2Q9Y586 359 aa11.92□□□□□ -0.5
VPS54-203ENST00000409558 R4GMQ9 66 aa11.92□□□□□ -0.5
VPS54-203ENST00000409558 ZFAND5O76080 213 aa11.92□□□□□ -0.5
VPS54-203ENST00000409558 IFNA7P01567 189 aa11.92□□□□□ -0.5
VPS54-203ENST00000409558 GAAP10253 952 aa11.92□□□□□ -0.5
VPS54-203ENST00000409558 SRYQ05066 204 aa11.92□□□□□ -0.5
VPS54-203ENST00000409558 SHBQ15464 509 aa11.92□□□□□ -0.5
VPS54-203ENST00000409558 CDCP2Q5VXM1 449 aa11.92□□□□□ -0.5
VPS54-203ENST00000409558 BAIAP2L2Q6UXY1 529 aa11.92□□□□□ -0.5
VPS54-203ENST00000409558 TMEM104Q8NE00 496 aa11.92□□□□□ -0.5
VPS54-203ENST00000409558 ASB10Q8WXI3 467 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms