RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 NEDD4LQ96PU5 975 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 SRXN1Q9BYN0 137 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 C11orf54Q9H0W9 315 aaPredicted RBP9.01□□□□□ -0.97
VPS53-202ENST00000389040 WDR76Q9H967 626 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 B3GAT2Q9NPZ5 323 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 CYSLTR2Q9NS75 346 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 PARPBPQ9NWS1 579 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 VSX1Q9NZR4 365 aaPredicted RBP9.01□□□□□ -0.97
VPS53-202ENST00000389040 KLHL13Q9P2N7 655 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 MRM2Q9UI43 246 aaKnown RBP9.01□□□□□ -0.97
VPS53-202ENST00000389040 SH3BGRL2Q9UJC5 107 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 FOXD3Q9UJU5 478 aaPredicted RBP9.01□□□□□ -0.97
VPS53-202ENST00000389040 ZNF281Q9Y2X9 895 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 KLF2Q9Y5W3 355 aaPredicted RBP9.01□□□□□ -0.97
VPS53-202ENST00000389040 TMEM14AQ9Y6G1 99 aa9.01□□□□□ -0.97
VPS53-202ENST00000389040 A0A0G2JNJ9 132 aa9□□□□□ -0.97
VPS53-202ENST00000389040 NOTOA8MTQ0 251 aa9□□□□□ -0.97
VPS53-202ENST00000389040 PHYHO14832 338 aa9□□□□□ -0.97
VPS53-202ENST00000389040 SMAD9O15198 467 aaKnown RBP9□□□□□ -0.97
VPS53-202ENST00000389040 UPK3AO75631 287 aa9□□□□□ -0.97
VPS53-202ENST00000389040 ZFPL1O95159 310 aa9□□□□□ -0.97
VPS53-202ENST00000389040 ABHD16AO95870 558 aa9□□□□□ -0.97
VPS53-202ENST00000389040 OPN1LWP04000 364 aa9□□□□□ -0.97
VPS53-202ENST00000389040 EIF4EP06730 217 aaKnown RBP9□□□□□ -0.97
VPS53-202ENST00000389040 NPR2P20594 1047 aa9□□□□□ -0.97
VPS53-202ENST00000389040 EIF2B2P49770 351 aaKnown RBP9□□□□□ -0.97
VPS53-202ENST00000389040 ADORA2A-AS1P86434 159 aa9□□□□□ -0.97
VPS53-202ENST00000389040 RASGEF1BQ0VAM2 473 aa9□□□□□ -0.97
VPS53-202ENST00000389040 OR7A5Q15622 319 aa9□□□□□ -0.97
VPS53-202ENST00000389040 CARTPTQ16568 116 aa9□□□□□ -0.97
VPS53-202ENST00000389040 CEP78Q5JTW2 689 aa9□□□□□ -0.97
VPS53-202ENST00000389040 LIPNQ5VXI9 398 aa9□□□□□ -0.97
VPS53-202ENST00000389040 TMEM225Q6GV28 225 aa9□□□□□ -0.97
VPS53-202ENST00000389040 ABLIM2Q6H8Q1 611 aa9□□□□□ -0.97
VPS53-202ENST00000389040 UNQ9370/PRO34162Q6UXP9 181 aa9□□□□□ -0.97
VPS53-202ENST00000389040 DPY19L4Q7Z388 723 aa9□□□□□ -0.97
VPS53-202ENST00000389040 MRGPRGQ86SM5 289 aa9□□□□□ -0.97
VPS53-202ENST00000389040 YIPF7Q8N8F6 280 aa9□□□□□ -0.97
VPS53-202ENST00000389040 C19orf18Q8NEA5 215 aa9□□□□□ -0.97
VPS53-202ENST00000389040 OR6K3Q8NGY3 331 aa9□□□□□ -0.97
VPS53-202ENST00000389040 OR6N2Q8NGY6 317 aa9□□□□□ -0.97
VPS53-202ENST00000389040 TRMT10AQ8TBZ6 339 aaKnown RBP9□□□□□ -0.97
VPS53-202ENST00000389040 CA5BP1Q8WTZ4 195 aa9□□□□□ -0.97
VPS53-202ENST00000389040 CHAC2Q8WUX2 184 aa9□□□□□ -0.97
VPS53-202ENST00000389040 PLSCR4Q9NRQ2 329 aa9□□□□□ -0.97
VPS53-202ENST00000389040 Q9UFV3 132 aa9□□□□□ -0.97
VPS53-202ENST00000389040 B9D1Q9UPM9 204 aa9□□□□□ -0.97
VPS53-202ENST00000389040 FKBP7Q9Y680 259 aa9□□□□□ -0.97
VPS53-202ENST00000389040 PCNX3Q9H6A9 2034 aa9□□□□□ -0.97
VPS53-202ENST00000389040 ZNF407Q9C0G0 2248 aa9□□□□□ -0.97
VPS53-202ENST00000389040 A0A0G2JMP0 313 aa8.99□□□□□ -0.97
VPS53-202ENST00000389040 A0A0X1KG70 313 aa8.99□□□□□ -0.97
VPS53-202ENST00000389040 A0A1W2PNV4 684 aa8.99□□□□□ -0.97
VPS53-202ENST00000389040 OR6C65A6NJZ3 312 aa8.99□□□□□ -0.97
VPS53-202ENST00000389040 MSTNO14793 375 aa8.99□□□□□ -0.97
VPS53-202ENST00000389040 PLA2G10O15496 165 aa8.99□□□□□ -0.97
VPS53-202ENST00000389040 AQP8O94778 261 aa8.99□□□□□ -0.97
VPS53-202ENST00000389040 RPP14O95059 124 aaKnown RBP8.99□□□□□ -0.97
VPS53-202ENST00000389040 GPANK1O95872 356 aa8.99□□□□□ -0.97
VPS53-202ENST00000389040 EPXP11678 715 aa8.99□□□□□ -0.97
VPS53-202ENST00000389040 ALOX5APP20292 161 aa8.99□□□□□ -0.97
VPS53-202ENST00000389040 CENPAP49450 140 aa8.99□□□□□ -0.97
VPS53-202ENST00000389040 TPTEP56180 551 aa8.99□□□□□ -0.97
VPS53-202ENST00000389040 ZP4Q12836 540 aa8.99□□□□□ -0.97
VPS53-202ENST00000389040 SLC17A1Q14916 467 aa8.99□□□□□ -0.97
VPS53-202ENST00000389040 FBXL19-AS1Q494R0 122 aa8.99□□□□□ -0.97
VPS53-202ENST00000389040 AGAP6Q5VW22 663 aa8.99□□□□□ -0.97
VPS53-202ENST00000389040 SYT9Q86SS6 491 aa8.99□□□□□ -0.97
VPS53-202ENST00000389040 OR4M2Q8NGB6 313 aa8.99□□□□□ -0.97
VPS53-202ENST00000389040 OR4M1Q8NGD0 313 aa8.99□□□□□ -0.97
VPS53-202ENST00000389040 HSD17B8Q92506 261 aa8.99□□□□□ -0.97
VPS53-202ENST00000389040 RGP1Q92546 391 aaPredicted RBP8.99□□□□□ -0.97
VPS53-202ENST00000389040 MAP6Q96JE9 813 aa8.99□□□□□ -0.97
VPS53-202ENST00000389040 ZCCHC4Q9H5U6 513 aa8.99□□□□□ -0.97
VPS53-202ENST00000389040 CHST11Q9NPF2 352 aa8.99□□□□□ -0.97
VPS53-202ENST00000389040 NOX4Q9NPH5 578 aa8.99□□□□□ -0.97
VPS53-202ENST00000389040 NPAP1Q9NZP6 1156 aa8.99□□□□□ -0.97
VPS53-202ENST00000389040 ABRACLQ9P1F3 81 aa8.99□□□□□ -0.97
VPS53-202ENST00000389040 IKZF2Q9UKS7 526 aa8.99□□□□□ -0.97
VPS53-202ENST00000389040 ESPL1Q14674 2120 aa8.99□□□□□ -0.97
VPS53-202ENST00000389040 NCKAP5O14513 1909 aa8.99□□□□□ -0.97
VPS53-202ENST00000389040 SLC22A23A1A5C7 686 aa8.99□□□□□ -0.97
VPS53-202ENST00000389040 ZNF716A6NP11 495 aa8.99□□□□□ -0.97
VPS53-202ENST00000389040 SLC16A7O60669 478 aa8.99□□□□□ -0.97
VPS53-202ENST00000389040 CLDN14O95500 239 aa8.99□□□□□ -0.97
VPS53-202ENST00000389040 PAHP00439 452 aa8.99□□□□□ -0.97
VPS53-202ENST00000389040 HLA-DQA2P01906 255 aa8.99□□□□□ -0.97
VPS53-202ENST00000389040 ATF1P18846 271 aa8.99□□□□□ -0.97
VPS53-202ENST00000389040 SRMP19623 302 aa8.99□□□□□ -0.97
VPS53-202ENST00000389040 RPS27P42677 84 aaKnown RBP8.99□□□□□ -0.97
VPS53-202ENST00000389040 KIR2DL2P43627 348 aaPredicted RBP8.99□□□□□ -0.97
VPS53-202ENST00000389040 PITPNBP48739 271 aa8.99□□□□□ -0.97
VPS53-202ENST00000389040 BLVRAP53004 296 aa8.99□□□□□ -0.97
VPS53-202ENST00000389040 PUDPQ08623 228 aa8.99□□□□□ -0.97
VPS53-202ENST00000389040 ALKBH1Q13686 389 aaKnown RBP8.99□□□□□ -0.97
VPS53-202ENST00000389040 RPRMLQ8N4K4 120 aa8.99□□□□□ -0.97
VPS53-202ENST00000389040 OTOSQ8NHW6 89 aa8.99□□□□□ -0.97
VPS53-202ENST00000389040 ITLN2Q8WWU7 325 aaPredicted RBP8.99□□□□□ -0.97
VPS53-202ENST00000389040 ROBO4Q8WZ75 1007 aa8.99□□□□□ -0.97
VPS53-202ENST00000389040 TMEM45BQ96B21 275 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms