RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 CNIH3Q8TBE1 160 aa12.97□□□□□ -0.33
SMPDL3A-201ENST00000368440 PLEKHA8Q96JA3 519 aa12.97□□□□□ -0.33
SMPDL3A-201ENST00000368440 MAP6Q96JE9 813 aa12.97□□□□□ -0.33
SMPDL3A-201ENST00000368440 PNRC2Q9NPJ4 139 aaKnown RBP12.97□□□□□ -0.33
SMPDL3A-201ENST00000368440 MYEF2Q9P2K5 600 aaKnown RBP12.97□□□□□ -0.33
SMPDL3A-201ENST00000368440 NDRG4Q9ULP0 352 aaKnown RBP12.97□□□□□ -0.33
SMPDL3A-201ENST00000368440 MYRFQ9Y2G1 1151 aa12.97□□□□□ -0.33
SMPDL3A-201ENST00000368440 CMAHPQ9Y471 501 aa12.97□□□□□ -0.33
SMPDL3A-201ENST00000368440 GLCEO94923 617 aa12.96□□□□□ -0.33
SMPDL3A-201ENST00000368440 NGFP01138 241 aa12.96□□□□□ -0.33
SMPDL3A-201ENST00000368440 LCKP06239 509 aa12.96□□□□□ -0.33
SMPDL3A-201ENST00000368440 PAICSP22234 425 aaKnown RBP12.96□□□□□ -0.33
SMPDL3A-201ENST00000368440 SLC2A5P22732 501 aa12.96□□□□□ -0.33
SMPDL3A-201ENST00000368440 PCSK6P29122 969 aa12.96□□□□□ -0.33
SMPDL3A-201ENST00000368440 CDH15P55291 814 aa12.96□□□□□ -0.33
SMPDL3A-201ENST00000368440 ATP5J2P56134 94 aa12.96□□□□□ -0.33
SMPDL3A-201ENST00000368440 Q5PR19 223 aa12.96□□□□□ -0.33
SMPDL3A-201ENST00000368440 ELFN2Q5R3F8 820 aa12.96□□□□□ -0.33
SMPDL3A-201ENST00000368440 CXXC5Q7LFL8 322 aaKnown RBP12.96□□□□□ -0.33
SMPDL3A-201ENST00000368440 BCDIN3DQ7Z5W3 292 aaKnown RBP12.96□□□□□ -0.33
SMPDL3A-201ENST00000368440 WFDC11Q8NEX6 87 aa12.96□□□□□ -0.33
SMPDL3A-201ENST00000368440 OR10S1Q8NGN2 331 aa12.96□□□□□ -0.33
SMPDL3A-201ENST00000368440 OR1J1Q8NGS3 322 aa12.96□□□□□ -0.33
SMPDL3A-201ENST00000368440 FAM81AQ8TBF8 368 aa12.96□□□□□ -0.33
SMPDL3A-201ENST00000368440 MRPL24Q96A35 216 aaKnown RBP12.96□□□□□ -0.33
SMPDL3A-201ENST00000368440 ZMYND19Q96E35 227 aaPredicted RBP12.96□□□□□ -0.33
SMPDL3A-201ENST00000368440 SYT3Q9BQG1 590 aa12.96□□□□□ -0.33
SMPDL3A-201ENST00000368440 CDADC1Q9BWV3 514 aa12.96□□□□□ -0.33
SMPDL3A-201ENST00000368440 PLK3Q9H4B4 646 aa12.96□□□□□ -0.33
SMPDL3A-201ENST00000368440 CREBBPQ92793 2442 aa12.96□□□□□ -0.34
SMPDL3A-201ENST00000368440 B9A039 149 aa12.95□□□□□ -0.34
SMPDL3A-201ENST00000368440 CLPTM1O96005 669 aa12.95□□□□□ -0.34
SMPDL3A-201ENST00000368440 IGHV4-39P01824 125 aa12.95□□□□□ -0.34
SMPDL3A-201ENST00000368440 SPARCP09486 303 aa12.95□□□□□ -0.34
SMPDL3A-201ENST00000368440 ENTPD1P49961 510 aa12.95□□□□□ -0.34
SMPDL3A-201ENST00000368440 BLMHQ13867 455 aa12.95□□□□□ -0.34
SMPDL3A-201ENST00000368440 KLHL12Q53G59 568 aa12.95□□□□□ -0.34
SMPDL3A-201ENST00000368440 SPATA46Q5T0L3 261 aa12.95□□□□□ -0.34
SMPDL3A-201ENST00000368440 OR2AJ1Q8NGZ0 328 aa12.95□□□□□ -0.34
SMPDL3A-201ENST00000368440 DOK1Q99704 481 aa12.95□□□□□ -0.34
SMPDL3A-201ENST00000368440 APOL4Q9BPW4 351 aa12.95□□□□□ -0.34
SMPDL3A-201ENST00000368440 TEX12Q9BXU0 123 aa12.95□□□□□ -0.34
SMPDL3A-201ENST00000368440 POFUT1Q9H488 388 aa12.95□□□□□ -0.34
SMPDL3A-201ENST00000368440 KCNG2Q9UJ96 466 aa12.95□□□□□ -0.34
SMPDL3A-201ENST00000368440 ZNF593O00488 134 aaPredicted RBP12.95□□□□□ -0.34
SMPDL3A-201ENST00000368440 ICMTO60725 284 aa12.95□□□□□ -0.34
SMPDL3A-201ENST00000368440 GSTT1P30711 240 aa12.95□□□□□ -0.34
SMPDL3A-201ENST00000368440 RAD52P43351 418 aa12.95□□□□□ -0.34
SMPDL3A-201ENST00000368440 RPS23P62266 143 aaKnown RBP12.95□□□□□ -0.34
SMPDL3A-201ENST00000368440 SNRPD2P62316 118 aaKnown RBP12.95□□□□□ -0.34
SMPDL3A-201ENST00000368440 EFNB1P98172 346 aa12.95□□□□□ -0.34
SMPDL3A-201ENST00000368440 PCK2Q16822 640 aa12.95□□□□□ -0.34
SMPDL3A-201ENST00000368440 RSPO1Q2MKA7 263 aaPredicted RBP12.95□□□□□ -0.34
SMPDL3A-201ENST00000368440 TMEM255AQ5JRV8 349 aa12.95□□□□□ -0.34
SMPDL3A-201ENST00000368440 RGS7BPQ6MZT1 257 aaPredicted RBP12.95□□□□□ -0.34
SMPDL3A-201ENST00000368440 ERI1Q8IV48 349 aaKnown RBP12.95□□□□□ -0.34
SMPDL3A-201ENST00000368440 TCEANCQ8N8B7 351 aa12.95□□□□□ -0.34
SMPDL3A-201ENST00000368440 SETD9Q8NE22 299 aa12.95□□□□□ -0.34
SMPDL3A-201ENST00000368440 ABHD4Q8TB40 342 aa12.95□□□□□ -0.34
SMPDL3A-201ENST00000368440 C4orf45Q96LM5 186 aa12.95□□□□□ -0.34
SMPDL3A-201ENST00000368440 PITX2Q99697 317 aa12.95□□□□□ -0.34
SMPDL3A-201ENST00000368440 BCL2L14Q9BZR8 327 aa12.95□□□□□ -0.34
SMPDL3A-201ENST00000368440 HDHD2Q9H0R4 259 aa12.95□□□□□ -0.34
SMPDL3A-201ENST00000368440 ZNF696Q9H7X3 374 aa12.95□□□□□ -0.34
SMPDL3A-201ENST00000368440 MARCH7Q9H992 704 aa12.95□□□□□ -0.34
SMPDL3A-201ENST00000368440 ENOPH1Q9UHY7 261 aa12.95□□□□□ -0.34
SMPDL3A-201ENST00000368440 GRIP1Q9Y3R0 1128 aa12.95□□□□□ -0.34
SMPDL3A-201ENST00000368440 H7C417 338 aa12.94□□□□□ -0.34
SMPDL3A-201ENST00000368440 PRODHO43272 600 aa12.94□□□□□ -0.34
SMPDL3A-201ENST00000368440 ABHD16AO95870 558 aa12.94□□□□□ -0.34
SMPDL3A-201ENST00000368440 ISL1P61371 349 aa12.94□□□□□ -0.34
SMPDL3A-201ENST00000368440 APOFQ13790 326 aa12.94□□□□□ -0.34
SMPDL3A-201ENST00000368440 MAD2L1BPQ15013 274 aaPredicted RBP12.94□□□□□ -0.34
SMPDL3A-201ENST00000368440 SPNS3Q6ZMD2 512 aa12.94□□□□□ -0.34
SMPDL3A-201ENST00000368440 DCXRQ7Z4W1 244 aa12.94□□□□□ -0.34
SMPDL3A-201ENST00000368440 TIGD4Q8IY51 512 aa12.94□□□□□ -0.34
SMPDL3A-201ENST00000368440 ZCCHC24Q8N2G6 241 aaKnown RBP12.94□□□□□ -0.34
SMPDL3A-201ENST00000368440 OR6N2Q8NGY6 317 aa12.94□□□□□ -0.34
SMPDL3A-201ENST00000368440 SLC25A40Q8TBP6 338 aa12.94□□□□□ -0.34
SMPDL3A-201ENST00000368440 TRMT61AQ96FX7 289 aaKnown RBP12.94□□□□□ -0.34
SMPDL3A-201ENST00000368440 HRASLS5Q96KN8 279 aa12.94□□□□□ -0.34
SMPDL3A-201ENST00000368440 INTS14Q96SY0 518 aa12.94□□□□□ -0.34
SMPDL3A-201ENST00000368440 COQ7Q99807 217 aa12.94□□□□□ -0.34
SMPDL3A-201ENST00000368440 EIF3KQ9UBQ5 218 aaKnown RBP12.94□□□□□ -0.34
SMPDL3A-201ENST00000368440 ATPIF1Q9UII2 106 aa12.94□□□□□ -0.34
SMPDL3A-201ENST00000368440 DUSP13Q9UII6 198 aa12.94□□□□□ -0.34
SMPDL3A-201ENST00000368440 ARID1AO14497 2285 aa12.93□□□□□ -0.34
SMPDL3A-201ENST00000368440 CCDC182A6NF36 153 aa12.93□□□□□ -0.34
SMPDL3A-201ENST00000368440 TLX2O43763 284 aaPredicted RBP12.93□□□□□ -0.34
SMPDL3A-201ENST00000368440 SELENOFO60613 162 aa12.93□□□□□ -0.34
SMPDL3A-201ENST00000368440 LY6HO94772 140 aa12.93□□□□□ -0.34
SMPDL3A-201ENST00000368440 SMIM18P0DKX4 95 aa12.93□□□□□ -0.34
SMPDL3A-201ENST00000368440 EEF1B2P24534 225 aaKnown RBP12.93□□□□□ -0.34
SMPDL3A-201ENST00000368440 MPV17P39210 176 aa12.93□□□□□ -0.34
SMPDL3A-201ENST00000368440 IL18R1Q13478 541 aa12.93□□□□□ -0.34
SMPDL3A-201ENST00000368440 TEX30Q5JUR7 227 aa12.93□□□□□ -0.34
SMPDL3A-201ENST00000368440 DPY19L4Q7Z388 723 aa12.93□□□□□ -0.34
SMPDL3A-201ENST00000368440 BPIFB6Q8NFQ5 453 aa12.93□□□□□ -0.34
SMPDL3A-201ENST00000368440 TSPAN14Q8NG11 270 aa12.93□□□□□ -0.34
SMPDL3A-201ENST00000368440 TMEM163Q8TC26 289 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms