RNA–Protein interactions for RNA: ENST00000356000.7

RTN3-205, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,645 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-205ENST00000356000 CD82P27701 267 aa14.17□□□□□ -0.14
RTN3-205ENST00000356000 TACR3P29371 465 aa14.17□□□□□ -0.14
RTN3-205ENST00000356000 TAGLN2P37802 199 aaKnown RBP14.17□□□□□ -0.14
RTN3-205ENST00000356000 PAX5Q02548 391 aa14.17□□□□□ -0.14
RTN3-205ENST00000356000 CDKN3Q16667 212 aa14.17□□□□□ -0.14
RTN3-205ENST00000356000 C1orf194Q5T5A4 169 aa14.17□□□□□ -0.14
RTN3-205ENST00000356000 THSD4Q6ZMP0 1018 aa14.17□□□□□ -0.14
RTN3-205ENST00000356000 MTSS1LQ765P7 747 aa14.17□□□□□ -0.14
RTN3-205ENST00000356000 OR51D1Q8NGF3 324 aa14.17□□□□□ -0.14
RTN3-205ENST00000356000 RAB39BQ96DA2 213 aa14.17□□□□□ -0.14
RTN3-205ENST00000356000 SNX22Q96L94 193 aa14.17□□□□□ -0.14
RTN3-205ENST00000356000 PBDC1Q9BVG4 233 aa14.17□□□□□ -0.14
RTN3-205ENST00000356000 SLCO5A1Q9H2Y9 848 aa14.17□□□□□ -0.14
RTN3-205ENST00000356000 CDV3Q9UKY7 258 aaKnown RBP14.17□□□□□ -0.14
RTN3-205ENST00000356000 TMED7Q9Y3B3 224 aa14.17□□□□□ -0.14
RTN3-205ENST00000356000 PLXND1Q9Y4D7 1925 aa14.17□□□□□ -0.14
RTN3-205ENST00000356000 YLPM1P49750 1951 aaKnown RBP14.17□□□□□ -0.14
RTN3-205ENST00000356000 HTTP42858 3142 aa14.17□□□□□ -0.14
RTN3-205ENST00000356000 KIR2DL5BA0A0G2JN68 375 aa14.16□□□□□ -0.14
RTN3-205ENST00000356000 KIR2DL5BA0A0G2JPC4 375 aa14.16□□□□□ -0.14
RTN3-205ENST00000356000 A0A1B0GW64 132 aa14.16□□□□□ -0.14
RTN3-205ENST00000356000 M0QZQ0 153 aa14.16□□□□□ -0.14
RTN3-205ENST00000356000 NME2P1O60361 137 aa14.16□□□□□ -0.14
RTN3-205ENST00000356000 TSPAN2O60636 221 aa14.16□□□□□ -0.14
RTN3-205ENST00000356000 GAPDHP04406 335 aaKnown RBP14.16□□□□□ -0.14
RTN3-205ENST00000356000 PGA3P0DJD8 388 aa14.16□□□□□ -0.14
RTN3-205ENST00000356000 PTNP21246 168 aa14.16□□□□□ -0.14
RTN3-205ENST00000356000 LMO1P25800 156 aa14.16□□□□□ -0.14
RTN3-205ENST00000356000 NANOS3P60323 173 aaKnown RBP14.16□□□□□ -0.14
RTN3-205ENST00000356000 UPP1Q16831 310 aa14.16□□□□□ -0.14
RTN3-205ENST00000356000 ZNF101Q8IZC7 436 aa14.16□□□□□ -0.14
RTN3-205ENST00000356000 KIR2DL5AQ8N109 375 aa14.16□□□□□ -0.14
RTN3-205ENST00000356000 MRGPRFQ96AM1 343 aa14.16□□□□□ -0.14
RTN3-205ENST00000356000 TIFAQ96CG3 184 aa14.16□□□□□ -0.14
RTN3-205ENST00000356000 PRRT1Q99946 306 aa14.16□□□□□ -0.14
RTN3-205ENST00000356000 PDE7BQ9NP56 450 aa14.16□□□□□ -0.14
RTN3-205ENST00000356000 H3BNC9 293 aa14.16□□□□□ -0.14
RTN3-205ENST00000356000 EFSO43281 561 aa14.16□□□□□ -0.14
RTN3-205ENST00000356000 CD160O95971 181 aa14.16□□□□□ -0.14
RTN3-205ENST00000356000 CYB5AP00167 134 aa14.16□□□□□ -0.14
RTN3-205ENST00000356000 GSTP1P09211 210 aaKnown RBP14.16□□□□□ -0.14
RTN3-205ENST00000356000 BRS3P32247 399 aa14.16□□□□□ -0.14
RTN3-205ENST00000356000 KHKP50053 298 aa14.16□□□□□ -0.14
RTN3-205ENST00000356000 CDC42EP1Q00587 391 aa14.16□□□□□ -0.14
RTN3-205ENST00000356000 Q499Y3 187 aa14.16□□□□□ -0.14
RTN3-205ENST00000356000 SLC35F2Q8IXU6 374 aa14.16□□□□□ -0.14
RTN3-205ENST00000356000 PLPP5Q8NEB5 264 aa14.16□□□□□ -0.14
RTN3-205ENST00000356000 OR5AK2Q8NH90 309 aa14.16□□□□□ -0.14
RTN3-205ENST00000356000 ZMYND19Q96E35 227 aaPredicted RBP14.16□□□□□ -0.14
RTN3-205ENST00000356000 MCHR1Q99705 422 aa14.16□□□□□ -0.14
RTN3-205ENST00000356000 OR8D2Q9GZM6 311 aa14.16□□□□□ -0.14
RTN3-205ENST00000356000 SLC17A5Q9NRA2 495 aa14.16□□□□□ -0.14
RTN3-205ENST00000356000 GPR173Q9NS66 373 aa14.16□□□□□ -0.14
RTN3-205ENST00000356000 MARCH2Q9P0N8 246 aa14.16□□□□□ -0.14
RTN3-205ENST00000356000 IGLV3-16A0A075B6K0 115 aa14.15□□□□□ -0.14
RTN3-205ENST00000356000 RCBTB2O95199 551 aa14.15□□□□□ -0.14
RTN3-205ENST00000356000 PGA4P0DJD7 388 aa14.15□□□□□ -0.14
RTN3-205ENST00000356000 PGA5P0DJD9 388 aa14.15□□□□□ -0.14
RTN3-205ENST00000356000 MAKP20794 623 aa14.15□□□□□ -0.14
RTN3-205ENST00000356000 TANGO2Q6ICL3 276 aa14.15□□□□□ -0.14
RTN3-205ENST00000356000 LEG1Q6P5S2 330 aa14.15□□□□□ -0.14
RTN3-205ENST00000356000 SZRD1Q7Z422 152 aa14.15□□□□□ -0.14
RTN3-205ENST00000356000 SUMF2Q8NBJ7 301 aa14.15□□□□□ -0.14
RTN3-205ENST00000356000 OR4S1Q8NGB4 309 aa14.15□□□□□ -0.14
RTN3-205ENST00000356000 FAM210BQ96KR6 192 aa14.15□□□□□ -0.14
RTN3-205ENST00000356000 CNN2Q99439 309 aaKnown RBP14.15□□□□□ -0.14
RTN3-205ENST00000356000 NKX3-1Q99801 234 aaPredicted RBP14.15□□□□□ -0.14
RTN3-205ENST00000356000 MENTQ9BUN1 341 aa14.15□□□□□ -0.14
RTN3-205ENST00000356000 SMDT1Q9H4I9 107 aa14.15□□□□□ -0.14
RTN3-205ENST00000356000 DNAJC4Q9NNZ3 241 aa14.15□□□□□ -0.14
RTN3-205ENST00000356000 LHX3Q9UBR4 397 aa14.15□□□□□ -0.14
RTN3-205ENST00000356000 A0A1W2PN81 502 aa14.15□□□□□ -0.14
RTN3-205ENST00000356000 H3BQ15 152 aa14.15□□□□□ -0.14
RTN3-205ENST00000356000 CDC40O60508 579 aaKnown RBP eCLIP14.15□□□□□ -0.14
RTN3-205ENST00000356000 ERCC1P07992 297 aaPredicted RBP14.15□□□□□ -0.14
RTN3-205ENST00000356000 IL6RP08887 468 aaPredicted RBP14.15□□□□□ -0.14
RTN3-205ENST00000356000 ZNF28P17035 718 aa14.15□□□□□ -0.14
RTN3-205ENST00000356000 IMPA1P29218 277 aa14.15□□□□□ -0.14
RTN3-205ENST00000356000 CHRNA7P36544 502 aa14.15□□□□□ -0.14
RTN3-205ENST00000356000 CHRFAM7AQ494W8 412 aa14.15□□□□□ -0.14
RTN3-205ENST00000356000 GXYLT1Q4G148 440 aa14.15□□□□□ -0.14
RTN3-205ENST00000356000 C9orf50Q5SZB4 431 aa14.15□□□□□ -0.14
RTN3-205ENST00000356000 BTNL3Q6UXE8 466 aa14.15□□□□□ -0.14
RTN3-205ENST00000356000 ZNF836Q6ZNA1 936 aa14.15□□□□□ -0.14
RTN3-205ENST00000356000 TMEM40Q8WWA1 233 aa14.15□□□□□ -0.14
RTN3-205ENST00000356000 WDR34Q96EX3 536 aa14.15□□□□□ -0.14
RTN3-205ENST00000356000 LGR4Q9BXB1 951 aa14.15□□□□□ -0.14
RTN3-205ENST00000356000 PARP12Q9H0J9 701 aaKnown RBP14.15□□□□□ -0.14
RTN3-205ENST00000356000 PRDM6Q9NQX0 595 aa14.15□□□□□ -0.14
RTN3-205ENST00000356000 LRFN1Q9P244 771 aa14.15□□□□□ -0.14
RTN3-205ENST00000356000 PADI1Q9ULC6 663 aa14.15□□□□□ -0.14
RTN3-205ENST00000356000 TRIOBPQ9H2D6 2365 aa14.15□□□□□ -0.14
RTN3-205ENST00000356000 HSBP1L1C9JCN9 74 aa14.14□□□□□ -0.15
RTN3-205ENST00000356000 JTBO76095 146 aa14.14□□□□□ -0.15
RTN3-205ENST00000356000 CST2P09228 141 aa14.14□□□□□ -0.15
RTN3-205ENST00000356000 IRF2P14316 349 aa14.14□□□□□ -0.15
RTN3-205ENST00000356000 CFPP27918 469 aa14.14□□□□□ -0.15
RTN3-205ENST00000356000 ARRB1P49407 418 aaPredicted RBP14.14□□□□□ -0.15
RTN3-205ENST00000356000 GAS6Q14393 721 aa14.14□□□□□ -0.15
RTN3-205ENST00000356000 CCSMST1Q4G0I0 132 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms