RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 WNK2Q9Y3S1 2297 aa8.06□□□□□ -1.12
USP4-202ENST00000351842 C5orf63A6NC05 138 aa8.06□□□□□ -1.12
USP4-202ENST00000351842 EFCAB10A6NFE3 127 aa8.06□□□□□ -1.12
USP4-202ENST00000351842 E9PLN8 166 aa8.06□□□□□ -1.12
USP4-202ENST00000351842 CDK2AP1O14519 115 aa8.06□□□□□ -1.12
USP4-202ENST00000351842 SGCEO43556 437 aa8.06□□□□□ -1.12
USP4-202ENST00000351842 LALBAP00709 142 aa8.06□□□□□ -1.12
USP4-202ENST00000351842 KRT8P05787 483 aa8.06□□□□□ -1.12
USP4-202ENST00000351842 KLHL22Q53GT1 634 aa8.06□□□□□ -1.12
USP4-202ENST00000351842 SLC18B1Q6NT16 456 aa8.06□□□□□ -1.12
USP4-202ENST00000351842 SLC25A47Q6Q0C1 308 aa8.06□□□□□ -1.12
USP4-202ENST00000351842 NHLRC1Q6VVB1 395 aa8.06□□□□□ -1.12
USP4-202ENST00000351842 ADGRE4PQ86SQ3 457 aa8.06□□□□□ -1.12
USP4-202ENST00000351842 MDP1Q86V88 176 aa8.06□□□□□ -1.12
USP4-202ENST00000351842 ANKRD13BQ86YJ7 626 aa8.06□□□□□ -1.12
USP4-202ENST00000351842 OR6K3Q8NGY3 331 aa8.06□□□□□ -1.12
USP4-202ENST00000351842 RORBQ92753 470 aa8.06□□□□□ -1.12
USP4-202ENST00000351842 DDOQ99489 341 aa8.06□□□□□ -1.12
USP4-202ENST00000351842 VKORC1Q9BQB6 163 aa8.06□□□□□ -1.12
USP4-202ENST00000351842 RCE1Q9Y256 329 aa8.06□□□□□ -1.12
USP4-202ENST00000351842 IGKV3D-15A0A087WSY6 115 aa8.05□□□□□ -1.12
USP4-202ENST00000351842 ZNF724A8MTY0 619 aa8.05□□□□□ -1.12
USP4-202ENST00000351842 ZNF670-ZNF695F2Z2N8 137 aa8.05□□□□□ -1.12
USP4-202ENST00000351842 SULT1C4O75897 302 aa8.05□□□□□ -1.12
USP4-202ENST00000351842 IGF2P01344 180 aa8.05□□□□□ -1.12
USP4-202ENST00000351842 LCATP04180 440 aa8.05□□□□□ -1.12
USP4-202ENST00000351842 SLC2A5P22732 501 aa8.05□□□□□ -1.12
USP4-202ENST00000351842 OPRM1P35372 400 aa8.05□□□□□ -1.12
USP4-202ENST00000351842 MADCAM1Q13477 382 aa8.05□□□□□ -1.12
USP4-202ENST00000351842 OCLNQ16625 522 aa8.05□□□□□ -1.12
USP4-202ENST00000351842 TSTQ16762 297 aaKnown RBP8.05□□□□□ -1.12
USP4-202ENST00000351842 LIPNQ5VXI9 398 aa8.05□□□□□ -1.12
USP4-202ENST00000351842 FAM57BQ71RH2 274 aa8.05□□□□□ -1.12
USP4-202ENST00000351842 FAM220AQ7Z4H9 259 aa8.05□□□□□ -1.12
USP4-202ENST00000351842 TIGD4Q8IY51 512 aa8.05□□□□□ -1.12
USP4-202ENST00000351842 NMNAT2Q9BZQ4 307 aa8.05□□□□□ -1.12
USP4-202ENST00000351842 ERVK13-1Q9NX77 482 aa8.05□□□□□ -1.12
USP4-202ENST00000351842 UGT2A1Q9Y4X1 527 aa8.05□□□□□ -1.12
USP4-202ENST00000351842 NBPF19A0A087WUL8 3843 aa8.05□□□□□ -1.12
USP4-202ENST00000351842 A0A1W2PPW3 197 aa8.05□□□□□ -1.12
USP4-202ENST00000351842 CDK1P06493 297 aa8.05□□□□□ -1.12
USP4-202ENST00000351842 LIMS3P0CW19 117 aa8.05□□□□□ -1.12
USP4-202ENST00000351842 LIMS4P0CW20 117 aa8.05□□□□□ -1.12
USP4-202ENST00000351842 MPGP29372 298 aa8.05□□□□□ -1.12
USP4-202ENST00000351842 EFNB1P98172 346 aa8.05□□□□□ -1.12
USP4-202ENST00000351842 ZNF85Q03923 595 aa8.05□□□□□ -1.12
USP4-202ENST00000351842 HNRNPA0Q13151 305 aaKnown RBP8.05□□□□□ -1.12
USP4-202ENST00000351842 TAB1Q15750 504 aa8.05□□□□□ -1.12
USP4-202ENST00000351842 GPR107Q5VW38 600 aa8.05□□□□□ -1.12
USP4-202ENST00000351842 Q6ZT83 130 aa8.05□□□□□ -1.12
USP4-202ENST00000351842 BHLHA15Q7RTS1 189 aaPredicted RBP8.05□□□□□ -1.12
USP4-202ENST00000351842 NPRL2Q8WTW4 380 aa8.05□□□□□ -1.12
USP4-202ENST00000351842 FAM71F1Q96KD3 344 aaPredicted RBP8.05□□□□□ -1.12
USP4-202ENST00000351842 DACH2Q96NX9 599 aa8.05□□□□□ -1.12
USP4-202ENST00000351842 NAA50Q9GZZ1 169 aaKnown RBP8.05□□□□□ -1.12
USP4-202ENST00000351842 C1orf198Q9H425 327 aa8.05□□□□□ -1.12
USP4-202ENST00000351842 ENPP5Q9UJA9 477 aa8.05□□□□□ -1.12
USP4-202ENST00000351842 PTGER4P35408 488 aa8.05□□□□□ -1.12
USP4-202ENST00000351842 TGFBR1P36897 503 aa8.05□□□□□ -1.12
USP4-202ENST00000351842 PSG4Q00888 419 aa8.05□□□□□ -1.12
USP4-202ENST00000351842 RAB40BQ12829 278 aa8.05□□□□□ -1.12
USP4-202ENST00000351842 GSG1Q2KHT4 349 aa8.05□□□□□ -1.12
USP4-202ENST00000351842 FAM209AQ5JX71 171 aa8.05□□□□□ -1.12
USP4-202ENST00000351842 FAM205BPQ63HN1 556 aa8.05□□□□□ -1.12
USP4-202ENST00000351842 HIST2H2BCQ6DN03 193 aa8.05□□□□□ -1.12
USP4-202ENST00000351842 OTOSQ8NHW6 89 aa8.05□□□□□ -1.12
USP4-202ENST00000351842 TMEM54Q969K7 222 aa8.05□□□□□ -1.12
USP4-202ENST00000351842 MUCL1Q96DR8 90 aa8.05□□□□□ -1.12
USP4-202ENST00000351842 SOX7Q9BT81 388 aa8.05□□□□□ -1.12
USP4-202ENST00000351842 HDHD5Q9BXW7 423 aa8.05□□□□□ -1.12
USP4-202ENST00000351842 DUSP21Q9H596 190 aa8.05□□□□□ -1.12
USP4-202ENST00000351842 SIAEQ9HAT2 523 aa8.05□□□□□ -1.12
USP4-202ENST00000351842 KCNJ16Q9NPI9 418 aa8.05□□□□□ -1.12
USP4-202ENST00000351842 MALT1Q9UDY8 824 aa8.05□□□□□ -1.12
USP4-202ENST00000351842 TMEM269A0A1B0GVZ9 245 aa8.04□□□□□ -1.12
USP4-202ENST00000351842 HSPB2A8KAH6 182 aa8.04□□□□□ -1.12
USP4-202ENST00000351842 A8MXE2 369 aa8.04□□□□□ -1.12
USP4-202ENST00000351842 IGHMP01871 453 aa8.04□□□□□ -1.12
USP4-202ENST00000351842 TIMP3P35625 211 aa8.04□□□□□ -1.12
USP4-202ENST00000351842 PLP2Q04941 152 aa8.04□□□□□ -1.12
USP4-202ENST00000351842 ENDOGQ14249 297 aaKnown RBP8.04□□□□□ -1.12
USP4-202ENST00000351842 SPHARQ15513 63 aa8.04□□□□□ -1.12
USP4-202ENST00000351842 HSPB2Q16082 182 aa8.04□□□□□ -1.12
USP4-202ENST00000351842 TIGD6Q17RP2 521 aa8.04□□□□□ -1.12
USP4-202ENST00000351842 ADAM5Q6NVV9 412 aa8.04□□□□□ -1.12
USP4-202ENST00000351842 SLC16A9Q7RTY1 509 aa8.04□□□□□ -1.12
USP4-202ENST00000351842 BATF2Q8N1L9 274 aa8.04□□□□□ -1.12
USP4-202ENST00000351842 KLHL36Q8N4N3 616 aa8.04□□□□□ -1.12
USP4-202ENST00000351842 CHCHD6Q9BRQ6 235 aa8.04□□□□□ -1.12
USP4-202ENST00000351842 MOKQ9UQ07 419 aa8.04□□□□□ -1.12
USP4-202ENST00000351842 LRP12Q9Y561 859 aa8.04□□□□□ -1.12
USP4-202ENST00000351842 VPS13CQ709C8 3753 aa8.04□□□□□ -1.12
USP4-202ENST00000351842 CLPXO76031 633 aa8.04□□□□□ -1.12
USP4-202ENST00000351842 CD8BP10966 210 aa8.04□□□□□ -1.12
USP4-202ENST00000351842 NR2C1P13056 603 aa8.04□□□□□ -1.12
USP4-202ENST00000351842 SLC25A1P53007 311 aa8.04□□□□□ -1.12
USP4-202ENST00000351842 GMFBP60983 142 aa8.04□□□□□ -1.12
USP4-202ENST00000351842 ERVS71-1P61550 626 aa8.04□□□□□ -1.12
USP4-202ENST00000351842 MXD1Q05195 221 aa8.04□□□□□ -1.12
USP4-202ENST00000351842 MFGE8Q08431 387 aaPredicted RBP8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms