RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 GTPBP8Q8N3Z3 284 aaPredicted RBP12.05□□□□□ -0.48
SKA3-202ENST00000314759 DMBX1Q8NFW5 382 aa12.05□□□□□ -0.48
SKA3-202ENST00000314759 SLC25A36Q96CQ1 311 aa12.05□□□□□ -0.48
SKA3-202ENST00000314759 CPNE2Q96FN4 548 aaPredicted RBP12.05□□□□□ -0.48
SKA3-202ENST00000314759 ADOQ96SZ5 270 aa12.05□□□□□ -0.48
SKA3-202ENST00000314759 FAM96BQ9Y3D0 163 aa12.05□□□□□ -0.48
SKA3-202ENST00000314759 C9orf170A2RU37 121 aa12.05□□□□□ -0.48
SKA3-202ENST00000314759 C17orf105B2RV13 164 aa12.05□□□□□ -0.48
SKA3-202ENST00000314759 DCNP07585 359 aaKnown RBP12.05□□□□□ -0.48
SKA3-202ENST00000314759 ZNF117Q03924 483 aa12.05□□□□□ -0.48
SKA3-202ENST00000314759 GPM6BQ13491 265 aa12.05□□□□□ -0.48
SKA3-202ENST00000314759 EIF2B1Q14232 305 aaKnown RBP12.05□□□□□ -0.48
SKA3-202ENST00000314759 AVPI1Q5T686 147 aa12.05□□□□□ -0.48
SKA3-202ENST00000314759 KCTD18Q6PI47 426 aaPredicted RBP12.05□□□□□ -0.48
SKA3-202ENST00000314759 SLC22A18ASQ8N1D0 253 aa12.05□□□□□ -0.48
SKA3-202ENST00000314759 OR5AP2Q8NGF4 316 aa12.05□□□□□ -0.48
SKA3-202ENST00000314759 OR4D6Q8NGJ1 314 aa12.05□□□□□ -0.48
SKA3-202ENST00000314759 MITD1Q8WV92 249 aa12.05□□□□□ -0.48
SKA3-202ENST00000314759 NKD1Q969G9 470 aa12.05□□□□□ -0.48
SKA3-202ENST00000314759 RELTQ969Z4 430 aa12.05□□□□□ -0.48
SKA3-202ENST00000314759 NUDT9Q9BW91 350 aa12.05□□□□□ -0.48
SKA3-202ENST00000314759 ZFP57Q9NU63 452 aa12.05□□□□□ -0.48
SKA3-202ENST00000314759 MBD2Q9UBB5 411 aa12.05□□□□□ -0.48
SKA3-202ENST00000314759 FREM3P0C091 2139 aa12.05□□□□□ -0.48
SKA3-202ENST00000314759 FGF16O43320 207 aa12.04□□□□□ -0.48
SKA3-202ENST00000314759 LMX1BO60663 402 aa12.04□□□□□ -0.48
SKA3-202ENST00000314759 CXCR1P25024 350 aa12.04□□□□□ -0.48
SKA3-202ENST00000314759 PRKXP51817 358 aa12.04□□□□□ -0.48
SKA3-202ENST00000314759 RPL27P61353 136 aaKnown RBP12.04□□□□□ -0.48
SKA3-202ENST00000314759 SKP1P63208 163 aa12.04□□□□□ -0.48
SKA3-202ENST00000314759 BIKQ13323 160 aa12.04□□□□□ -0.48
SKA3-202ENST00000314759 SLC22A6Q4U2R8 563 aa12.04□□□□□ -0.48
SKA3-202ENST00000314759 ARMC6Q6NXE6 501 aa12.04□□□□□ -0.48
SKA3-202ENST00000314759 PRR22Q8IZ63 422 aa12.04□□□□□ -0.48
SKA3-202ENST00000314759 GVQW1Q8N7I0 195 aa12.04□□□□□ -0.48
SKA3-202ENST00000314759 OR13H1Q8NG92 308 aa12.04□□□□□ -0.48
SKA3-202ENST00000314759 ZNF519Q8TB69 540 aa12.04□□□□□ -0.48
SKA3-202ENST00000314759 AQP3Q92482 292 aa12.04□□□□□ -0.48
SKA3-202ENST00000314759 CMBLQ96DG6 245 aa12.04□□□□□ -0.48
SKA3-202ENST00000314759 MMABQ96EY8 250 aaPredicted RBP12.04□□□□□ -0.48
SKA3-202ENST00000314759 MRGPRX1Q96LB2 322 aa12.04□□□□□ -0.48
SKA3-202ENST00000314759 PRRT1Q99946 306 aa12.04□□□□□ -0.48
SKA3-202ENST00000314759 S1PR5Q9H228 398 aa12.04□□□□□ -0.48
SKA3-202ENST00000314759 TREM1Q9NP99 234 aa12.04□□□□□ -0.48
SKA3-202ENST00000314759 SLC2A8Q9NY64 477 aa12.04□□□□□ -0.48
SKA3-202ENST00000314759 CARHSP1Q9Y2V2 147 aaKnown RBP12.04□□□□□ -0.48
SKA3-202ENST00000314759 A0A0A6YYH2 397 aa12.04□□□□□ -0.48
SKA3-202ENST00000314759 A6NJ64 397 aa12.04□□□□□ -0.48
SKA3-202ENST00000314759 SGCEO43556 437 aa12.04□□□□□ -0.48
SKA3-202ENST00000314759 HCRTR2O43614 444 aa12.04□□□□□ -0.48
SKA3-202ENST00000314759 MPZL1O95297 269 aa12.04□□□□□ -0.48
SKA3-202ENST00000314759 IL2RAP01589 272 aa12.04□□□□□ -0.48
SKA3-202ENST00000314759 SLC37A1P57057 533 aa12.04□□□□□ -0.48
SKA3-202ENST00000314759 IL13RA1P78552 427 aa12.04□□□□□ -0.48
SKA3-202ENST00000314759 HHEXQ03014 270 aa12.04□□□□□ -0.48
SKA3-202ENST00000314759 MEF2DQ14814 521 aa12.04□□□□□ -0.48
SKA3-202ENST00000314759 RNASE10Q5GAN6 216 aaKnown RBP12.04□□□□□ -0.48
SKA3-202ENST00000314759 OR52W1Q6IF63 320 aa12.04□□□□□ -0.48
SKA3-202ENST00000314759 MARCH3Q86UD3 253 aa12.04□□□□□ -0.48
SKA3-202ENST00000314759 FJX1Q86VR8 437 aa12.04□□□□□ -0.48
SKA3-202ENST00000314759 INO80EQ8NBZ0 244 aaPredicted RBP12.04□□□□□ -0.48
SKA3-202ENST00000314759 OR13C3Q8NGS6 347 aa12.04□□□□□ -0.48
SKA3-202ENST00000314759 PTPMT1Q8WUK0 201 aaPredicted RBP12.04□□□□□ -0.48
SKA3-202ENST00000314759 SELENOIQ9C0D9 397 aa12.04□□□□□ -0.48
SKA3-202ENST00000314759 CERS4Q9HA82 394 aa12.04□□□□□ -0.48
SKA3-202ENST00000314759 EMC9Q9Y3B6 208 aa12.04□□□□□ -0.48
SKA3-202ENST00000314759 TRAV36DV7A0A075B6V5 113 aa12.04□□□□□ -0.48
SKA3-202ENST00000314759 KIR2DS5A0A0G2JLQ3 304 aa12.04□□□□□ -0.48
SKA3-202ENST00000314759 A0A0G2JNG1 304 aa12.04□□□□□ -0.48
SKA3-202ENST00000314759 KIR2DS3K7RE56 304 aa12.04□□□□□ -0.48
SKA3-202ENST00000314759 ICOSLGO75144 302 aa12.04□□□□□ -0.48
SKA3-202ENST00000314759 TNFP01375 233 aa12.04□□□□□ -0.48
SKA3-202ENST00000314759 FABP1P07148 127 aa12.04□□□□□ -0.48
SKA3-202ENST00000314759 PGAM2P15259 253 aa12.04□□□□□ -0.48
SKA3-202ENST00000314759 DNASE1L1P49184 302 aa12.04□□□□□ -0.48
SKA3-202ENST00000314759 HSD17B7P56937 341 aa12.04□□□□□ -0.48
SKA3-202ENST00000314759 KIR2DS5Q14953 304 aa12.04□□□□□ -0.48
SKA3-202ENST00000314759 LYPD6Q86Y78 171 aa12.04□□□□□ -0.48
SKA3-202ENST00000314759 LAT2Q9GZY6 243 aa12.04□□□□□ -0.48
SKA3-202ENST00000314759 ACKR4Q9NPB9 350 aa12.04□□□□□ -0.48
SKA3-202ENST00000314759 GSN-AS1Q9NRJ2 163 aa12.04□□□□□ -0.48
SKA3-202ENST00000314759 GDF2Q9UK05 429 aaPredicted RBP12.04□□□□□ -0.48
SKA3-202ENST00000314759 RHBDD3Q9Y3P4 386 aa12.04□□□□□ -0.48
SKA3-202ENST00000314759 BLACEA4D250 179 aa12.03□□□□□ -0.48
SKA3-202ENST00000314759 MEGF11A6BM72 1044 aa12.03□□□□□ -0.48
SKA3-202ENST00000314759 EEF1E1-BLOC1S5C9J1V9 151 aa12.03□□□□□ -0.48
SKA3-202ENST00000314759 RAB27BO00194 218 aa12.03□□□□□ -0.48
SKA3-202ENST00000314759 SRSF10O75494 262 aaKnown RBP12.03□□□□□ -0.48
SKA3-202ENST00000314759 NSA2O95478 260 aaKnown RBP12.03□□□□□ -0.48
SKA3-202ENST00000314759 PPICP45877 212 aa12.03□□□□□ -0.48
SKA3-202ENST00000314759 YPEL5P62699 121 aa12.03□□□□□ -0.48
SKA3-202ENST00000314759 ZNF260Q3ZCT1 412 aa12.03□□□□□ -0.48
SKA3-202ENST00000314759 ADAD2Q8NCV1 583 aaKnown RBP12.03□□□□□ -0.48
SKA3-202ENST00000314759 CASTOR1Q8WTX7 329 aa12.03□□□□□ -0.48
SKA3-202ENST00000314759 TMED6Q8WW62 240 aa12.03□□□□□ -0.48
SKA3-202ENST00000314759 CNTNAP3BQ96NU0 1288 aa12.03□□□□□ -0.48
SKA3-202ENST00000314759 PHB2Q99623 299 aa12.03□□□□□ -0.48
SKA3-202ENST00000314759 VSX1Q9NZR4 365 aaPredicted RBP12.03□□□□□ -0.48
SKA3-202ENST00000314759 HHLA2Q9UM44 414 aa12.03□□□□□ -0.48
SKA3-202ENST00000314759 LOC390937A0A1W2PQ73 354 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms