RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 MMP11P24347 488 aa12.69□□□□□ -0.38
CSPG4-201ENST00000308508 TNFRSF4P43489 277 aa12.69□□□□□ -0.38
CSPG4-201ENST00000308508 HTR3DQ70Z44 454 aa12.69□□□□□ -0.38
CSPG4-201ENST00000308508 TIPARPQ7Z3E1 657 aaKnown RBP12.69□□□□□ -0.38
CSPG4-201ENST00000308508 ZFPM2Q8WW38 1151 aa12.69□□□□□ -0.38
CSPG4-201ENST00000308508 JAM3Q9BX67 310 aa12.69□□□□□ -0.38
CSPG4-201ENST00000308508 CHST11Q9NPF2 352 aa12.69□□□□□ -0.38
CSPG4-201ENST00000308508 NDRG4Q9ULP0 352 aaKnown RBP12.69□□□□□ -0.38
CSPG4-201ENST00000308508 ZNF142P52746 1687 aaPredicted RBP12.69□□□□□ -0.38
CSPG4-201ENST00000308508 RNASEK-C17orf49H0YIS7 233 aa12.69□□□□□ -0.38
CSPG4-201ENST00000308508 HOXC11O43248 304 aaPredicted RBP12.69□□□□□ -0.38
CSPG4-201ENST00000308508 SDHAP31040 664 aa12.69□□□□□ -0.38
CSPG4-201ENST00000308508 PCBP4P57723 403 aaKnown RBP12.69□□□□□ -0.38
CSPG4-201ENST00000308508 HAPLN2Q9GZV7 340 aa12.69□□□□□ -0.38
CSPG4-201ENST00000308508 DUSP22Q9NRW4 184 aa12.69□□□□□ -0.38
CSPG4-201ENST00000308508 POLDIP2Q9Y2S7 368 aa12.69□□□□□ -0.38
CSPG4-201ENST00000308508 A0A0U1RQS6 177 aa12.69□□□□□ -0.38
CSPG4-201ENST00000308508 GRPP07492 148 aa12.69□□□□□ -0.38
CSPG4-201ENST00000308508 SLC25A4P12235 298 aa12.69□□□□□ -0.38
CSPG4-201ENST00000308508 EN2P19622 333 aaPredicted RBP12.69□□□□□ -0.38
CSPG4-201ENST00000308508 CNN1P51911 297 aaKnown RBP12.69□□□□□ -0.38
CSPG4-201ENST00000308508 RPL27P61353 136 aaKnown RBP12.69□□□□□ -0.38
CSPG4-201ENST00000308508 TMEM268Q5VZI3 342 aa12.69□□□□□ -0.38
CSPG4-201ENST00000308508 OR10D4PQ8NGN7 298 aa12.69□□□□□ -0.38
CSPG4-201ENST00000308508 OR10X1Q8NGY0 326 aa12.69□□□□□ -0.38
CSPG4-201ENST00000308508 OBP2AQ9NY56 170 aa12.69□□□□□ -0.38
CSPG4-201ENST00000308508 HEXAP06865 529 aa12.69□□□□□ -0.38
CSPG4-201ENST00000308508 NAT1P18440 290 aa12.69□□□□□ -0.38
CSPG4-201ENST00000308508 PMCHP20382 165 aa12.69□□□□□ -0.38
CSPG4-201ENST00000308508 ANKRD16Q6P6B7 361 aa12.69□□□□□ -0.38
CSPG4-201ENST00000308508 SCD5Q86SK9 330 aa12.69□□□□□ -0.38
CSPG4-201ENST00000308508 PCED1AQ9H1Q7 454 aa12.69□□□□□ -0.38
CSPG4-201ENST00000308508 GDE1Q9NZC3 331 aa12.69□□□□□ -0.38
CSPG4-201ENST00000308508 LOC107986453A0A1B0GWG9 222 aa12.68□□□□□ -0.38
CSPG4-201ENST00000308508 PRSS42Q7Z5A4 293 aa12.68□□□□□ -0.38
CSPG4-201ENST00000308508 CPEB3Q8NE35 698 aaKnown RBP12.68□□□□□ -0.38
CSPG4-201ENST00000308508 FAM3CQ92520 227 aa12.68□□□□□ -0.38
CSPG4-201ENST00000308508 PINX1Q96BK5 328 aaKnown RBP12.68□□□□□ -0.38
CSPG4-201ENST00000308508 KLF16Q9BXK1 252 aaPredicted RBP12.68□□□□□ -0.38
CSPG4-201ENST00000308508 MS4A8Q9BY19 250 aa12.68□□□□□ -0.38
CSPG4-201ENST00000308508 TPSD1Q9BZJ3 242 aa12.68□□□□□ -0.38
CSPG4-201ENST00000308508 A0A087WV62 115 aa12.68□□□□□ -0.38
CSPG4-201ENST00000308508 ZNF813Q6ZN06 617 aa12.68□□□□□ -0.38
CSPG4-201ENST00000308508 ZNF66Q6ZN08 573 aa12.68□□□□□ -0.38
CSPG4-201ENST00000308508 ZNF429Q86V71 674 aa12.68□□□□□ -0.38
CSPG4-201ENST00000308508 LKAAEAR1Q8TD35 194 aa12.68□□□□□ -0.38
CSPG4-201ENST00000308508 SMIM19Q96E16 107 aa12.68□□□□□ -0.38
CSPG4-201ENST00000308508 CMTM3Q96MX0 182 aa12.68□□□□□ -0.38
CSPG4-201ENST00000308508 CTSFQ9UBX1 484 aa12.68□□□□□ -0.38
CSPG4-201ENST00000308508 CYB5R1Q9UHQ9 305 aa12.68□□□□□ -0.38
CSPG4-201ENST00000308508 AKR7A2O43488 359 aa12.68□□□□□ -0.38
CSPG4-201ENST00000308508 CTSLP07711 333 aa12.68□□□□□ -0.38
CSPG4-201ENST00000308508 PVRP15151 417 aa12.68□□□□□ -0.38
CSPG4-201ENST00000308508 ZNF17P17021 662 aa12.68□□□□□ -0.38
CSPG4-201ENST00000308508 CD1CP29017 333 aa12.68□□□□□ -0.38
CSPG4-201ENST00000308508 GZMKP49863 264 aa12.68□□□□□ -0.38
CSPG4-201ENST00000308508 C1orf140Q5VVS0 124 aa12.68□□□□□ -0.38
CSPG4-201ENST00000308508 MAVSQ7Z434 540 aa12.68□□□□□ -0.38
CSPG4-201ENST00000308508 C12orf76Q8N812 135 aaPredicted RBP12.68□□□□□ -0.38
CSPG4-201ENST00000308508 OR51F2Q8NH61 342 aa12.68□□□□□ -0.38
CSPG4-201ENST00000308508 SMIM12Q96EX1 92 aa12.68□□□□□ -0.38
CSPG4-201ENST00000308508 OPALINQ96PE5 141 aa12.68□□□□□ -0.38
CSPG4-201ENST00000308508 EGLN1Q9GZT9 426 aa12.68□□□□□ -0.38
CSPG4-201ENST00000308508 SLC35E2P0CK97 266 aa12.68□□□□□ -0.38
CSPG4-201ENST00000308508 SNRPNP63162 240 aaKnown RBP12.68□□□□□ -0.38
CSPG4-201ENST00000308508 TM4SF18Q96CE8 201 aa12.68□□□□□ -0.38
CSPG4-201ENST00000308508 PTGESO14684 152 aa12.68□□□□□ -0.38
CSPG4-201ENST00000308508 ARRB2P32121 409 aa12.68□□□□□ -0.38
CSPG4-201ENST00000308508 NOVA1P51513 510 aaKnown RBP12.68□□□□□ -0.38
CSPG4-201ENST00000308508 CLLU1Q5K131 121 aa12.68□□□□□ -0.38
CSPG4-201ENST00000308508 PRR27Q6MZM9 219 aa12.68□□□□□ -0.38
CSPG4-201ENST00000308508 LRP10Q7Z4F1 713 aa12.68□□□□□ -0.38
CSPG4-201ENST00000308508 ZDHHC5Q9C0B5 715 aa12.68□□□□□ -0.38
CSPG4-201ENST00000308508 BMPR1BO00238 502 aa12.68□□□□□ -0.38
CSPG4-201ENST00000308508 BCAT2O15382 392 aaPredicted RBP12.68□□□□□ -0.38
CSPG4-201ENST00000308508 BMPR1AP36894 532 aa12.68□□□□□ -0.38
CSPG4-201ENST00000308508 GALR1P47211 349 aa12.68□□□□□ -0.38
CSPG4-201ENST00000308508 OR8G1Q15617 311 aa12.68□□□□□ -0.38
CSPG4-201ENST00000308508 SLCO4C1Q6ZQN7 724 aa12.68□□□□□ -0.38
CSPG4-201ENST00000308508 TCEAL8Q8IYN2 117 aa12.68□□□□□ -0.38
CSPG4-201ENST00000308508 NTNG1Q9Y2I2 539 aa12.68□□□□□ -0.38
CSPG4-201ENST00000308508 CSF2RBP32927 897 aa12.67□□□□□ -0.38
CSPG4-201ENST00000308508 IFI44Q8TCB0 444 aa12.67□□□□□ -0.38
CSPG4-201ENST00000308508 ZNF775Q96BV0 537 aaPredicted RBP12.67□□□□□ -0.38
CSPG4-201ENST00000308508 RNF167Q9H6Y7 350 aa12.67□□□□□ -0.38
CSPG4-201ENST00000308508 ZBTB32Q9Y2Y4 487 aaPredicted RBP12.67□□□□□ -0.38
CSPG4-201ENST00000308508 PIGPP57054 158 aa12.67□□□□□ -0.38
CSPG4-201ENST00000308508 GPR32P1Q8NGA4 272 aa12.67□□□□□ -0.38
CSPG4-201ENST00000308508 CAMTA1Q9Y6Y1 1673 aa12.67□□□□□ -0.38
CSPG4-201ENST00000308508 C1SP09871 688 aa12.67□□□□□ -0.38
CSPG4-201ENST00000308508 DCDP81605 110 aaKnown RBP12.67□□□□□ -0.38
CSPG4-201ENST00000308508 CYHR1Q6ZMK1 362 aa12.67□□□□□ -0.38
CSPG4-201ENST00000308508 TTC9BQ8N6N2 239 aa12.67□□□□□ -0.38
CSPG4-201ENST00000308508 MAP6Q96JE9 813 aa12.67□□□□□ -0.38
CSPG4-201ENST00000308508 CSF3RQ99062 836 aa12.67□□□□□ -0.38
CSPG4-201ENST00000308508 M0R143 59 aa12.67□□□□□ -0.38
CSPG4-201ENST00000308508 CER1O95813 267 aa12.67□□□□□ -0.38
CSPG4-201ENST00000308508 TOMM34Q15785 309 aaPredicted RBP12.67□□□□□ -0.38
CSPG4-201ENST00000308508 UBE2FQ969M7 185 aa12.67□□□□□ -0.38
CSPG4-201ENST00000308508 MMACHCQ9Y4U1 282 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms