RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 SLC35G3Q8N808 338 aa15.81■□□□□ 0.12
SYNPO-201ENST00000307662 SLAMF6Q96DU3 332 aa15.81■□□□□ 0.12
SYNPO-201ENST00000307662 TVP23CQ96ET8 276 aa15.81■□□□□ 0.12
SYNPO-201ENST00000307662 ZNF251Q9BRH9 671 aa15.81■□□□□ 0.12
SYNPO-201ENST00000307662 C12orf10Q9HB07 376 aa15.81■□□□□ 0.12
SYNPO-201ENST00000307662 PYCARD-AS1I3L0S3 204 aa15.8■□□□□ 0.12
SYNPO-201ENST00000307662 ENPP1P22413 925 aa15.8■□□□□ 0.12
SYNPO-201ENST00000307662 CYHR1Q6ZMK1 362 aa15.8■□□□□ 0.12
SYNPO-201ENST00000307662 CMTM3Q96MX0 182 aa15.8■□□□□ 0.12
SYNPO-201ENST00000307662 DERL3Q96Q80 235 aa15.8■□□□□ 0.12
SYNPO-201ENST00000307662 A0A087WV62 115 aa15.8■□□□□ 0.12
SYNPO-201ENST00000307662 ZNF816-ZNF321PA0A0X1KG74 233 aa15.8■□□□□ 0.12
SYNPO-201ENST00000307662 ZNF814B7Z6K7 855 aa15.8■□□□□ 0.12
SYNPO-201ENST00000307662 TRAF3IP2O43734 574 aaPredicted RBP15.8■□□□□ 0.12
SYNPO-201ENST00000307662 SSSCA1O60232 199 aa15.8■□□□□ 0.12
SYNPO-201ENST00000307662 ZNF321PQ8N8H1 164 aa15.8■□□□□ 0.12
SYNPO-201ENST00000307662 TMEM229BQ8NBD8 167 aa15.8■□□□□ 0.12
SYNPO-201ENST00000307662 OR5M1Q8NGP8 315 aa15.8■□□□□ 0.12
SYNPO-201ENST00000307662 PBX4Q9BYU1 374 aa15.8■□□□□ 0.12
SYNPO-201ENST00000307662 WSB2Q9NYS7 404 aaPredicted RBP15.8■□□□□ 0.12
SYNPO-201ENST00000307662 RNASEK-C17orf49H0YIS7 233 aa15.8■□□□□ 0.12
SYNPO-201ENST00000307662 FCMRO60667 390 aa15.8■□□□□ 0.12
SYNPO-201ENST00000307662 DTYMKP23919 212 aa15.8■□□□□ 0.12
SYNPO-201ENST00000307662 FGF9P31371 208 aaPredicted RBP15.8■□□□□ 0.12
SYNPO-201ENST00000307662 ZNF787Q6DD87 383 aa15.8■□□□□ 0.12
SYNPO-201ENST00000307662 SIGLECL1Q8N7X8 197 aa15.8■□□□□ 0.12
SYNPO-201ENST00000307662 OR1J1Q8NGS3 322 aa15.8■□□□□ 0.12
SYNPO-201ENST00000307662 PRR35P0CG20 571 aa15.8■□□□□ 0.12
SYNPO-201ENST00000307662 PI3P19957 117 aa15.8■□□□□ 0.12
SYNPO-201ENST00000307662 AKR1E2Q96JD6 320 aa15.8■□□□□ 0.12
SYNPO-201ENST00000307662 PLA2G12AQ9BZM1 189 aa15.8■□□□□ 0.12
SYNPO-201ENST00000307662 HCFC2Q9Y5Z7 792 aa15.8■□□□□ 0.12
SYNPO-201ENST00000307662 BTAF1O14981 1849 aa15.79■□□□□ 0.12
SYNPO-201ENST00000307662 ASPDHA6ND91 283 aa15.79■□□□□ 0.12
SYNPO-201ENST00000307662 CD38P28907 300 aa15.79■□□□□ 0.12
SYNPO-201ENST00000307662 CLPPQ16740 277 aaPredicted RBP15.79■□□□□ 0.12
SYNPO-201ENST00000307662 ARIH2OSQ8N7S6 290 aa15.79■□□□□ 0.12
SYNPO-201ENST00000307662 GPR173Q9NS66 373 aa15.79■□□□□ 0.12
SYNPO-201ENST00000307662 GHRLQ9UBU3 117 aa15.79■□□□□ 0.12
SYNPO-201ENST00000307662 PHOX2AO14813 284 aa15.79■□□□□ 0.12
SYNPO-201ENST00000307662 LRP3O75074 770 aa15.79■□□□□ 0.12
SYNPO-201ENST00000307662 RBP2P50120 134 aa15.79■□□□□ 0.12
SYNPO-201ENST00000307662 FAM27D1Q5T7N8 215 aa15.79■□□□□ 0.12
SYNPO-201ENST00000307662 ZNF813Q6ZN06 617 aa15.79■□□□□ 0.12
SYNPO-201ENST00000307662 REEP6Q96HR9 211 aa15.79■□□□□ 0.12
SYNPO-201ENST00000307662 SLC35D1Q9NTN3 355 aa15.79■□□□□ 0.12
SYNPO-201ENST00000307662 ABLIM3O94929 683 aa15.79■□□□□ 0.12
SYNPO-201ENST00000307662 AKR7A3O95154 331 aa15.79■□□□□ 0.12
SYNPO-201ENST00000307662 FABP1P07148 127 aa15.79■□□□□ 0.12
SYNPO-201ENST00000307662 OR10J4P0C629 311 aa15.79■□□□□ 0.12
SYNPO-201ENST00000307662 H2BFWTQ7Z2G1 175 aa15.79■□□□□ 0.12
SYNPO-201ENST00000307662 CNEP1R1Q8N9A8 125 aa15.79■□□□□ 0.12
SYNPO-201ENST00000307662 HHIPQ96QV1 700 aa15.79■□□□□ 0.12
SYNPO-201ENST00000307662 IGLV3-25P01717 112 aa15.79■□□□□ 0.12
SYNPO-201ENST00000307662 CRYBB2P43320 205 aa15.79■□□□□ 0.12
SYNPO-201ENST00000307662 SSR4P51571 173 aa15.79■□□□□ 0.12
SYNPO-201ENST00000307662 ACKR1Q16570 336 aa15.79■□□□□ 0.12
SYNPO-201ENST00000307662 PLPP6Q8IY26 295 aa15.79■□□□□ 0.12
SYNPO-201ENST00000307662 GPX8Q8TED1 209 aa15.79■□□□□ 0.12
SYNPO-201ENST00000307662 PIGQQ9BRB3 760 aa15.79■□□□□ 0.12
SYNPO-201ENST00000307662 FAM103A1Q9BTL3 118 aaKnown RBP15.79■□□□□ 0.12
SYNPO-201ENST00000307662 SCRG1O75711 98 aa15.78■□□□□ 0.12
SYNPO-201ENST00000307662 GLI4P10075 376 aa15.78■□□□□ 0.12
SYNPO-201ENST00000307662 APOBEC1P41238 236 aaKnown RBP15.78■□□□□ 0.12
SYNPO-201ENST00000307662 BAMBIQ13145 260 aa15.78■□□□□ 0.12
SYNPO-201ENST00000307662 PRTGQ2VWP7 1150 aa15.78■□□□□ 0.12
SYNPO-201ENST00000307662 CST9Q5W186 159 aa15.78■□□□□ 0.12
SYNPO-201ENST00000307662 SPNS2Q8IVW8 549 aa15.78■□□□□ 0.12
SYNPO-201ENST00000307662 LHX4Q969G2 390 aa15.78■□□□□ 0.12
SYNPO-201ENST00000307662 RPUSD4Q96CM3 377 aaKnown RBP15.78■□□□□ 0.12
SYNPO-201ENST00000307662 SMIM7Q9BQ49 75 aa15.78■□□□□ 0.12
SYNPO-201ENST00000307662 CTSFQ9UBX1 484 aa15.78■□□□□ 0.12
SYNPO-201ENST00000307662 CYB5R1Q9UHQ9 305 aa15.78■□□□□ 0.12
SYNPO-201ENST00000307662 CARD18P57730 90 aa15.78■□□□□ 0.12
SYNPO-201ENST00000307662 HSF1Q00613 529 aa15.78■□□□□ 0.12
SYNPO-201ENST00000307662 TMEM268Q5VZI3 342 aa15.78■□□□□ 0.12
SYNPO-201ENST00000307662 SYT13Q7L8C5 426 aa15.78■□□□□ 0.12
SYNPO-201ENST00000307662 CAMKMTQ7Z624 323 aa15.78■□□□□ 0.12
SYNPO-201ENST00000307662 LMAN1LQ9HAT1 526 aa15.78■□□□□ 0.12
SYNPO-201ENST00000307662 LAMTOR5O43504 91 aa15.78■□□□□ 0.12
SYNPO-201ENST00000307662 ETHE1O95571 254 aa15.78■□□□□ 0.12
SYNPO-201ENST00000307662 EDN3P14138 238 aa15.78■□□□□ 0.12
SYNPO-201ENST00000307662 BSGP35613 385 aa15.78■□□□□ 0.12
SYNPO-201ENST00000307662 CD300CQ08708 224 aa15.78■□□□□ 0.12
SYNPO-201ENST00000307662 HLXQ14774 488 aaPredicted RBP15.78■□□□□ 0.12
SYNPO-201ENST00000307662 ST3GAL2Q16842 350 aa15.78■□□□□ 0.12
SYNPO-201ENST00000307662 SIRT6Q8N6T7 355 aa15.78■□□□□ 0.12
SYNPO-201ENST00000307662 ACTR3CQ9C0K3 210 aaPredicted RBP15.78■□□□□ 0.12
SYNPO-201ENST00000307662 SIRT5Q9NXA8 310 aa15.78■□□□□ 0.12
SYNPO-201ENST00000307662 R4GMQ9 66 aa15.78■□□□□ 0.12
SYNPO-201ENST00000307662 G3V3Q6 166 aa15.78■□□□□ 0.12
SYNPO-201ENST00000307662 SPINT2O43291 252 aa15.78■□□□□ 0.12
SYNPO-201ENST00000307662 TIMM8AO60220 97 aaPredicted RBP15.78■□□□□ 0.12
SYNPO-201ENST00000307662 RAG2P55895 527 aa15.78■□□□□ 0.12
SYNPO-201ENST00000307662 SUMO1P63165 101 aaKnown RBP15.78■□□□□ 0.12
SYNPO-201ENST00000307662 SLC17A1Q14916 467 aa15.78■□□□□ 0.12
SYNPO-201ENST00000307662 BCORP1Q8N888 145 aa15.78■□□□□ 0.12
SYNPO-201ENST00000307662 DUSP23Q9BVJ7 150 aa15.78■□□□□ 0.12
SYNPO-201ENST00000307662 TPPP3Q9BW30 176 aa15.78■□□□□ 0.12
SYNPO-201ENST00000307662 NDUFB6O95139 128 aa15.77■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms