RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 B9D1Q9UPM9 204 aa12.11□□□□□ -0.47
SKA3-201ENST00000298260 URGCP-MRPS24S4R325 110 aa12.11□□□□□ -0.47
SKA3-201ENST00000298260 FREM3P0C091 2139 aa12.11□□□□□ -0.47
SKA3-201ENST00000298260 A0A1B0GTQ1 180 aa12.11□□□□□ -0.47
SKA3-201ENST00000298260 ZNF727A8MUV8 499 aa12.11□□□□□ -0.47
SKA3-201ENST00000298260 NPIPB9F8W1W9 429 aa12.11□□□□□ -0.47
SKA3-201ENST00000298260 ATXN7O15265 892 aaPredicted RBP12.11□□□□□ -0.47
SKA3-201ENST00000298260 HLA-DQA2P01906 255 aa12.11□□□□□ -0.47
SKA3-201ENST00000298260 MELTFP08582 738 aa12.11□□□□□ -0.47
SKA3-201ENST00000298260 OR13C7P0DN81 318 aa12.11□□□□□ -0.47
SKA3-201ENST00000298260 MAOAP21397 527 aa12.11□□□□□ -0.47
SKA3-201ENST00000298260 HTR2CP28335 458 aa12.11□□□□□ -0.47
SKA3-201ENST00000298260 RAB28P51157 221 aa12.11□□□□□ -0.47
SKA3-201ENST00000298260 MFGE8Q08431 387 aaPredicted RBP12.11□□□□□ -0.47
SKA3-201ENST00000298260 SURF2Q15527 256 aaPredicted RBP12.11□□□□□ -0.47
SKA3-201ENST00000298260 CEBPEQ15744 281 aa12.11□□□□□ -0.47
SKA3-201ENST00000298260 DMRTC1Q5HYR2 192 aa12.11□□□□□ -0.47
SKA3-201ENST00000298260 CDCP2Q5VXM1 449 aa12.11□□□□□ -0.47
SKA3-201ENST00000298260 DRAM2Q6UX65 266 aa12.11□□□□□ -0.47
SKA3-201ENST00000298260 SLC16A9Q7RTY1 509 aa12.11□□□□□ -0.47
SKA3-201ENST00000298260 MARCH3Q86UD3 253 aa12.11□□□□□ -0.47
SKA3-201ENST00000298260 ZNF595Q8IYB9 648 aa12.11□□□□□ -0.47
SKA3-201ENST00000298260 OR13C9Q8NGT0 318 aa12.11□□□□□ -0.47
SKA3-201ENST00000298260 CXorf40AQ8TE69 158 aa12.11□□□□□ -0.47
SKA3-201ENST00000298260 ZNF514Q96K75 400 aaPredicted RBP12.11□□□□□ -0.47
SKA3-201ENST00000298260 KLHDC3Q9BQ90 382 aa12.11□□□□□ -0.47
SKA3-201ENST00000298260 ELOVL3Q9HB03 270 aa12.11□□□□□ -0.47
SKA3-201ENST00000298260 SPHK2Q9NRA0 654 aa12.11□□□□□ -0.47
SKA3-201ENST00000298260 MFNGO00587 321 aa12.1□□□□□ -0.47
SKA3-201ENST00000298260 PHYHO14832 338 aa12.1□□□□□ -0.47
SKA3-201ENST00000298260 P2RX6O15547 441 aa12.1□□□□□ -0.47
SKA3-201ENST00000298260 GNB3P16520 340 aa12.1□□□□□ -0.47
SKA3-201ENST00000298260 HSD17B2P37059 387 aa12.1□□□□□ -0.47
SKA3-201ENST00000298260 CTXN1P60606 82 aa12.1□□□□□ -0.47
SKA3-201ENST00000298260 ZNF616Q08AN1 781 aa12.1□□□□□ -0.47
SKA3-201ENST00000298260 MEP1BQ16820 701 aa12.1□□□□□ -0.47
SKA3-201ENST00000298260 BTNL8Q6UX41 500 aa12.1□□□□□ -0.47
SKA3-201ENST00000298260 SPNS3Q6ZMD2 512 aa12.1□□□□□ -0.47
SKA3-201ENST00000298260 ZNF565Q8N9K5 539 aa12.1□□□□□ -0.47
SKA3-201ENST00000298260 C4orf45Q96LM5 186 aa12.1□□□□□ -0.47
SKA3-201ENST00000298260 TBX21Q9UL17 535 aa12.1□□□□□ -0.47
SKA3-201ENST00000298260 HRKO00198 91 aa12.1□□□□□ -0.47
SKA3-201ENST00000298260 RPLP2P05387 115 aaKnown RBP12.1□□□□□ -0.47
SKA3-201ENST00000298260 ADH1AP07327 375 aa12.1□□□□□ -0.47
SKA3-201ENST00000298260 CSNK1EP49674 416 aaKnown RBP12.1□□□□□ -0.47
SKA3-201ENST00000298260 ZNF239Q16600 458 aaKnown RBP12.1□□□□□ -0.47
SKA3-201ENST00000298260 ZNF343Q6P1L6 599 aa12.1□□□□□ -0.47
SKA3-201ENST00000298260 FBXO46Q6PJ61 603 aaPredicted RBP12.1□□□□□ -0.47
SKA3-201ENST00000298260 POMZP3Q6PJE2 187 aa12.1□□□□□ -0.47
SKA3-201ENST00000298260 DPY19L2P2Q6ZN68 376 aa12.1□□□□□ -0.47
SKA3-201ENST00000298260 PNLDC1Q8NA58 520 aaKnown RBP12.1□□□□□ -0.47
SKA3-201ENST00000298260 ASB17Q8WXJ9 295 aa12.1□□□□□ -0.47
SKA3-201ENST00000298260 EIF5A2Q9GZV4 153 aaKnown RBP12.1□□□□□ -0.47
SKA3-201ENST00000298260 LMAN2LQ9H0V9 348 aa12.1□□□□□ -0.47
SKA3-201ENST00000298260 MKKSQ9NPJ1 570 aaPredicted RBP12.1□□□□□ -0.47
SKA3-201ENST00000298260 MBNL1Q9NR56 388 aaKnown RBP12.1□□□□□ -0.47
SKA3-201ENST00000298260 FAM86C1Q9NVL1 165 aa12.1□□□□□ -0.47
SKA3-201ENST00000298260 ZDHHC8Q9ULC8 765 aa12.1□□□□□ -0.47
SKA3-201ENST00000298260 IGLON5A6NGN9 336 aa12.1□□□□□ -0.47
SKA3-201ENST00000298260 BRINP1O60477 761 aa12.1□□□□□ -0.47
SKA3-201ENST00000298260 ZNF432O94892 652 aa12.1□□□□□ -0.47
SKA3-201ENST00000298260 IL2RAP01589 272 aa12.1□□□□□ -0.47
SKA3-201ENST00000298260 HOXB5P09067 269 aa12.1□□□□□ -0.47
SKA3-201ENST00000298260 ACTR1BP42025 376 aa12.1□□□□□ -0.47
SKA3-201ENST00000298260 CEBPGP53567 150 aa12.1□□□□□ -0.47
SKA3-201ENST00000298260 FAM78AQ5JUQ0 283 aa12.1□□□□□ -0.47
SKA3-201ENST00000298260 TMEM225Q6GV28 225 aa12.1□□□□□ -0.47
SKA3-201ENST00000298260 PTCRAQ6ISU1 281 aaPredicted RBP12.1□□□□□ -0.47
SKA3-201ENST00000298260 CDC20BQ86Y33 519 aa12.1□□□□□ -0.47
SKA3-201ENST00000298260 OR4D6Q8NGJ1 314 aa12.1□□□□□ -0.47
SKA3-201ENST00000298260 INTS14Q96SY0 518 aa12.1□□□□□ -0.47
SKA3-201ENST00000298260 SLC2A8Q9NY64 477 aa12.1□□□□□ -0.47
SKA3-201ENST00000298260 FBXO7Q9Y3I1 522 aa12.1□□□□□ -0.47
SKA3-201ENST00000298260 HOXC4P09017 264 aaPredicted RBP12.09□□□□□ -0.47
SKA3-201ENST00000298260 RNF144BQ7Z419 303 aa12.09□□□□□ -0.47
SKA3-201ENST00000298260 MISP3Q96FF7 219 aa12.09□□□□□ -0.47
SKA3-201ENST00000298260 BSCL2Q96G97 398 aaPredicted RBP12.09□□□□□ -0.47
SKA3-201ENST00000298260 ZDHHC12Q96GR4 267 aa12.09□□□□□ -0.47
SKA3-201ENST00000298260 SLC17A9Q9BYT1 436 aa12.09□□□□□ -0.47
SKA3-201ENST00000298260 GPR61Q9BZJ8 451 aa12.09□□□□□ -0.47
SKA3-201ENST00000298260 CRISPLD2Q9H0B8 497 aa12.09□□□□□ -0.47
SKA3-201ENST00000298260 C19orf53Q9UNZ5 99 aaPredicted RBP12.09□□□□□ -0.47
SKA3-201ENST00000298260 PUS1Q9Y606 427 aaKnown RBP eCLIP12.09□□□□□ -0.47
SKA3-201ENST00000298260 LOC101059948A0A1B0GTJ6 334 aa12.09□□□□□ -0.47
SKA3-201ENST00000298260 K7EQS6 105 aa12.09□□□□□ -0.47
SKA3-201ENST00000298260 SOD2P04179 222 aa12.09□□□□□ -0.47
SKA3-201ENST00000298260 SFTPBP07988 381 aa12.09□□□□□ -0.47
SKA3-201ENST00000298260 ALOX5APP20292 161 aa12.09□□□□□ -0.47
SKA3-201ENST00000298260 CCR4P51679 360 aa12.09□□□□□ -0.47
SKA3-201ENST00000298260 DVL1P1P54792 670 aaPredicted RBP12.09□□□□□ -0.47
SKA3-201ENST00000298260 CDK3Q00526 305 aa12.09□□□□□ -0.47
SKA3-201ENST00000298260 MIDNQ504T8 468 aa12.09□□□□□ -0.47
SKA3-201ENST00000298260 TAF8Q7Z7C8 310 aa12.09□□□□□ -0.47
SKA3-201ENST00000298260 TCEAL8Q8IYN2 117 aa12.09□□□□□ -0.47
SKA3-201ENST00000298260 RNF128Q8TEB7 428 aa12.09□□□□□ -0.47
SKA3-201ENST00000298260 ZNF524Q96C55 264 aa12.09□□□□□ -0.47
SKA3-201ENST00000298260 POM121Q96HA1 1249 aa12.09□□□□□ -0.47
SKA3-201ENST00000298260 SLC5A7Q9GZV3 580 aa12.09□□□□□ -0.47
SKA3-201ENST00000298260 PDE7BQ9NP56 450 aa12.09□□□□□ -0.47
SKA3-201ENST00000298260 TMEM212A6NML5 194 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms