RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 FAM185AQ8N0U4 392 aa17.42■□□□□ 0.38
UPF1-201ENST00000262803 EDARADDQ8WWZ3 215 aa17.42■□□□□ 0.38
UPF1-201ENST00000262803 LOC107986453A0A1B0GWG9 222 aa17.41■□□□□ 0.38
UPF1-201ENST00000262803 H0Y8X5 98 aa17.41■□□□□ 0.38
UPF1-201ENST00000262803 ST8SIA3O43173 380 aa17.41■□□□□ 0.38
UPF1-201ENST00000262803 ZIC2O95409 532 aaPredicted RBP17.41■□□□□ 0.38
UPF1-201ENST00000262803 LY86O95711 162 aa17.41■□□□□ 0.38
UPF1-201ENST00000262803 SSBP1Q04837 148 aaKnown RBP17.41■□□□□ 0.38
UPF1-201ENST00000262803 SHBQ15464 509 aa17.41■□□□□ 0.38
UPF1-201ENST00000262803 FAM162BQ5T6X4 162 aa17.41■□□□□ 0.38
UPF1-201ENST00000262803 TXNIPQ9H3M7 391 aa17.41■□□□□ 0.38
UPF1-201ENST00000262803 TMEM265A0A087WTH1 108 aa17.41■□□□□ 0.38
UPF1-201ENST00000262803 SLC2A10O95528 541 aa17.41■□□□□ 0.38
UPF1-201ENST00000262803 APEHP13798 732 aaKnown RBP17.41■□□□□ 0.38
UPF1-201ENST00000262803 BPIFB3P59826 476 aa17.41■□□□□ 0.38
UPF1-201ENST00000262803 OR10X1Q8NGY0 326 aa17.41■□□□□ 0.38
UPF1-201ENST00000262803 GNPNAT1Q96EK6 184 aaPredicted RBP17.41■□□□□ 0.38
UPF1-201ENST00000262803 CCDC74BQ96LY2 380 aa17.41■□□□□ 0.38
UPF1-201ENST00000262803 TAAR6Q96RI8 345 aa17.41■□□□□ 0.38
UPF1-201ENST00000262803 M0R135 149 aa17.41■□□□□ 0.38
UPF1-201ENST00000262803 HSPB6O14558 160 aa17.41■□□□□ 0.38
UPF1-201ENST00000262803 CYC1P08574 325 aa17.41■□□□□ 0.38
UPF1-201ENST00000262803 GPR12P47775 334 aa17.41■□□□□ 0.38
UPF1-201ENST00000262803 SSX2Q16385 188 aa17.41■□□□□ 0.38
UPF1-201ENST00000262803 YRDCQ86U90 279 aaKnown RBP17.41■□□□□ 0.38
UPF1-201ENST00000262803 ZNF799Q96GE5 643 aa17.41■□□□□ 0.38
UPF1-201ENST00000262803 PKMYT1Q99640 499 aa17.41■□□□□ 0.38
UPF1-201ENST00000262803 WWTR1Q9GZV5 400 aa17.41■□□□□ 0.38
UPF1-201ENST00000262803 POMT2Q9UKY4 750 aa17.41■□□□□ 0.38
UPF1-201ENST00000262803 FGF17O60258 216 aa17.41■□□□□ 0.38
UPF1-201ENST00000262803 ITGBL1O95965 494 aaPredicted RBP17.41■□□□□ 0.38
UPF1-201ENST00000262803 MYOGP15173 224 aa17.41■□□□□ 0.38
UPF1-201ENST00000262803 HOXD11P31277 338 aaPredicted RBP17.41■□□□□ 0.38
UPF1-201ENST00000262803 GINS3Q9BRX5 216 aa17.41■□□□□ 0.38
UPF1-201ENST00000262803 TRAV17A0A0B4J275 112 aa17.4■□□□□ 0.38
UPF1-201ENST00000262803 LMO7DNF2Z398 122 aa17.4■□□□□ 0.38
UPF1-201ENST00000262803 TRAF3IP2O43734 574 aaPredicted RBP17.4■□□□□ 0.38
UPF1-201ENST00000262803 MBP02144 154 aa17.4■□□□□ 0.38
UPF1-201ENST00000262803 C9orf152Q5JTZ5 239 aa17.4■□□□□ 0.38
UPF1-201ENST00000262803 SLC38A9Q8NBW4 561 aa17.4■□□□□ 0.38
UPF1-201ENST00000262803 MAFAQ8NHW3 353 aaPredicted RBP17.4■□□□□ 0.38
UPF1-201ENST00000262803 CHST2Q9Y4C5 530 aa17.4■□□□□ 0.38
UPF1-201ENST00000262803 POM121BA6NF01 834 aa17.4■□□□□ 0.38
UPF1-201ENST00000262803 MYBPHQ13203 477 aa17.4■□□□□ 0.38
UPF1-201ENST00000262803 FAHD1Q6P587 224 aa17.4■□□□□ 0.38
UPF1-201ENST00000262803 TSEN54Q7Z6J9 526 aaKnown RBP17.4■□□□□ 0.38
UPF1-201ENST00000262803 SIRT6Q8N6T7 355 aa17.4■□□□□ 0.38
UPF1-201ENST00000262803 FYTTD1Q96QD9 318 aaKnown RBP17.4■□□□□ 0.38
UPF1-201ENST00000262803 HES7Q9BYE0 225 aa17.4■□□□□ 0.38
UPF1-201ENST00000262803 CLEC1BQ9P126 229 aa17.4■□□□□ 0.38
UPF1-201ENST00000262803 SLC22A20A6NK97 555 aa17.4■□□□□ 0.38
UPF1-201ENST00000262803 OR10J4P0C629 311 aa17.4■□□□□ 0.38
UPF1-201ENST00000262803 SOHLH1Q5JUK2 328 aa17.4■□□□□ 0.38
UPF1-201ENST00000262803 HIST2H3AQ71DI3 136 aa17.4■□□□□ 0.38
UPF1-201ENST00000262803 OR13C8Q8NGS7 320 aa17.4■□□□□ 0.38
UPF1-201ENST00000262803 GNB4Q9HAV0 340 aa17.4■□□□□ 0.38
UPF1-201ENST00000262803 ANKUB1A6NFN9 424 aa17.4■□□□□ 0.38
UPF1-201ENST00000262803 GALR2O43603 387 aaPredicted RBP17.4■□□□□ 0.38
UPF1-201ENST00000262803 MT-ND4LP03901 98 aa17.4■□□□□ 0.38
UPF1-201ENST00000262803 GLRA1P23415 457 aa17.4■□□□□ 0.38
UPF1-201ENST00000262803 DSCR4P56555 118 aaPredicted RBP17.4■□□□□ 0.38
UPF1-201ENST00000262803 OR2V1Q8NHB1 315 aa17.4■□□□□ 0.38
UPF1-201ENST00000262803 MED18Q9BUE0 208 aa17.4■□□□□ 0.38
UPF1-201ENST00000262803 CGGBP1Q9UFW8 167 aaPredicted RBP17.4■□□□□ 0.38
UPF1-201ENST00000262803 XKRY2A2RUG3 117 aa17.4■□□□□ 0.38
UPF1-201ENST00000262803 SIX6O95475 246 aa17.4■□□□□ 0.38
UPF1-201ENST00000262803 BSGP35613 385 aa17.4■□□□□ 0.38
UPF1-201ENST00000262803 NKX2-1P43699 371 aaPredicted RBP17.4■□□□□ 0.38
UPF1-201ENST00000262803 UBE2G1P62253 170 aa17.4■□□□□ 0.38
UPF1-201ENST00000262803 ERHP84090 104 aaKnown RBP17.4■□□□□ 0.38
UPF1-201ENST00000262803 EBPQ15125 230 aaKnown RBP17.4■□□□□ 0.38
UPF1-201ENST00000262803 PRTGQ2VWP7 1150 aa17.4■□□□□ 0.38
UPF1-201ENST00000262803 DEFB127Q9H1M4 99 aa17.4■□□□□ 0.38
UPF1-201ENST00000262803 SLC17A4Q9Y2C5 497 aa17.4■□□□□ 0.38
UPF1-201ENST00000262803 PMP2P02689 132 aa17.39■□□□□ 0.37
UPF1-201ENST00000262803 HPNP05981 417 aa17.39■□□□□ 0.37
UPF1-201ENST00000262803 OMGP23515 440 aa17.39■□□□□ 0.37
UPF1-201ENST00000262803 EPHA2P29317 976 aa17.39■□□□□ 0.37
UPF1-201ENST00000262803 MPPED2Q15777 294 aa17.39■□□□□ 0.37
UPF1-201ENST00000262803 IL34Q6ZMJ4 242 aa17.39■□□□□ 0.37
UPF1-201ENST00000262803 OR51F2Q8NH61 342 aa17.39■□□□□ 0.37
UPF1-201ENST00000262803 FAM234AQ9H0X4 552 aa17.39■□□□□ 0.37
UPF1-201ENST00000262803 WNT16Q9UBV4 365 aa17.39■□□□□ 0.37
UPF1-201ENST00000262803 HSD17B6O14756 317 aa17.39■□□□□ 0.37
UPF1-201ENST00000262803 ZDHHC23Q8IYP9 409 aa17.39■□□□□ 0.37
UPF1-201ENST00000262803 HPSE2Q8WWQ2 592 aa17.39■□□□□ 0.37
UPF1-201ENST00000262803 OIT3Q8WWZ8 545 aa17.39■□□□□ 0.37
UPF1-201ENST00000262803 ZNF391Q9UJN7 358 aa17.39■□□□□ 0.37
UPF1-201ENST00000262803 R4GMQ9 66 aa17.39■□□□□ 0.37
UPF1-201ENST00000262803 ACKR1Q16570 336 aa17.39■□□□□ 0.37
UPF1-201ENST00000262803 SMIM21Q3B7S5 101 aa17.39■□□□□ 0.37
UPF1-201ENST00000262803 CHRDL1Q9BU40 450 aa17.39■□□□□ 0.37
UPF1-201ENST00000262803 HIST1H1CP16403 213 aaKnown RBP17.39■□□□□ 0.37
UPF1-201ENST00000262803 SPI1P17947 270 aa17.39■□□□□ 0.37
UPF1-201ENST00000262803 TMEM81Q6P7N7 255 aa17.39■□□□□ 0.37
UPF1-201ENST00000262803 RPS10-NUDT3A0A1W2PQS6 291 aa17.38■□□□□ 0.37
UPF1-201ENST00000262803 ZGLP1P0C6A0 271 aa17.38■□□□□ 0.37
UPF1-201ENST00000262803 TNFRSF1AP19438 455 aa17.38■□□□□ 0.37
UPF1-201ENST00000262803 RPS10P46783 165 aaKnown RBP17.38■□□□□ 0.37
UPF1-201ENST00000262803 GABRA4P48169 554 aa17.38■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms