RNA–Protein interactions for RNA: ENST00000261058.2

CCDC54-201, Transcript of coiled-coil domain containing 54, humanhuman

APPRIS P1 BASIC

Gene CCDC54, Length 1,444 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54-201ENST00000261058 NPSR1Q6W5P4 371 aa3.18□□□□□ -1.9
CCDC54-201ENST00000261058 CERS6Q6ZMG9 384 aa3.18□□□□□ -1.9
CCDC54-201ENST00000261058 LRRC74BQ6ZQY2 392 aa3.18□□□□□ -1.9
CCDC54-201ENST00000261058 FBXO16Q8IX29 292 aaPredicted RBP3.18□□□□□ -1.9
CCDC54-201ENST00000261058 STK40Q8N2I9 435 aa3.18□□□□□ -1.9
CCDC54-201ENST00000261058 KIF2BQ8N4N8 673 aa3.18□□□□□ -1.9
CCDC54-201ENST00000261058 JAGN1Q8N5M9 183 aa3.18□□□□□ -1.9
CCDC54-201ENST00000261058 C15orf54Q8N8G6 183 aa3.18□□□□□ -1.9
CCDC54-201ENST00000261058 LRRC75AQ8NAA5 344 aa3.18□□□□□ -1.9
CCDC54-201ENST00000261058 FAM110BQ8TC76 370 aa3.18□□□□□ -1.9
CCDC54-201ENST00000261058 C22orf15Q8WYQ4 148 aa3.18□□□□□ -1.9
CCDC54-201ENST00000261058 PSMG2Q969U7 264 aa3.18□□□□□ -1.9
CCDC54-201ENST00000261058 SGTBQ96EQ0 304 aa3.18□□□□□ -1.9
CCDC54-201ENST00000261058 SDSLQ96GA7 329 aa3.18□□□□□ -1.9
CCDC54-201ENST00000261058 ZNF285Q96NJ3 590 aa3.18□□□□□ -1.9
CCDC54-201ENST00000261058 ZIM3Q96PE6 472 aa3.18□□□□□ -1.9
CCDC54-201ENST00000261058 TEAD3Q99594 435 aa3.18□□□□□ -1.9
CCDC54-201ENST00000261058 C12orf57Q99622 126 aa3.18□□□□□ -1.9
CCDC54-201ENST00000261058 MAPKAP1Q9BPZ7 522 aa3.18□□□□□ -1.9
CCDC54-201ENST00000261058 NIPSNAP3BQ9BS92 247 aa3.18□□□□□ -1.9
CCDC54-201ENST00000261058 COPS4Q9BT78 406 aa3.18□□□□□ -1.9
CCDC54-201ENST00000261058 TIPINQ9BVW5 301 aa3.18□□□□□ -1.9
CCDC54-201ENST00000261058 KIFC1Q9BW19 673 aa3.18□□□□□ -1.9
CCDC54-201ENST00000261058 MAP1LC3CQ9BXW4 147 aa3.18□□□□□ -1.9
CCDC54-201ENST00000261058 SLC19A3Q9BZV2 496 aa3.18□□□□□ -1.9
CCDC54-201ENST00000261058 IMP3Q9NV31 184 aaKnown RBP3.18□□□□□ -1.9
CCDC54-201ENST00000261058 MYEF2Q9P2K5 600 aaKnown RBP3.18□□□□□ -1.9
CCDC54-201ENST00000261058 ZNF282Q9UDV7 671 aaPredicted RBP3.18□□□□□ -1.9
CCDC54-201ENST00000261058 KLHL21Q9UJP4 597 aa3.18□□□□□ -1.9
CCDC54-201ENST00000261058 CLEC4EQ9ULY5 219 aa3.18□□□□□ -1.9
CCDC54-201ENST00000261058 SCML1Q9UN30 329 aa3.18□□□□□ -1.9
CCDC54-201ENST00000261058 SLC22A7Q9Y694 548 aa3.18□□□□□ -1.9
CCDC54-201ENST00000261058 SAR1BQ9Y6B6 198 aa3.18□□□□□ -1.9
CCDC54-201ENST00000261058 MRC2Q9UBG0 1479 aa3.17□□□□□ -1.9
CCDC54-201ENST00000261058 RAI1Q7Z5J4 1906 aaPredicted RBP3.17□□□□□ -1.9
CCDC54-201ENST00000261058 CCDC144AA2RUR9 1427 aa3.17□□□□□ -1.9
CCDC54-201ENST00000261058 SOGA1O94964 1423 aa3.17□□□□□ -1.9
CCDC54-201ENST00000261058 NUP155O75694 1391 aa3.17□□□□□ -1.9
CCDC54-201ENST00000261058 LOC100131303A0A0U1RQF7 123 aa3.17□□□□□ -1.9
CCDC54-201ENST00000261058 HSFX4A0A1B0GTS1 333 aaPredicted RBP3.17□□□□□ -1.9
CCDC54-201ENST00000261058 HSFX3A0A1B0GWH4 333 aaPredicted RBP3.17□□□□□ -1.9
CCDC54-201ENST00000261058 PQLC2LA1A4F0 135 aa3.17□□□□□ -1.9
CCDC54-201ENST00000261058 FABP12A6NFH5 140 aa3.17□□□□□ -1.9
CCDC54-201ENST00000261058 A6NIZ1 184 aa3.17□□□□□ -1.9
CCDC54-201ENST00000261058 A8MU10 97 aa3.17□□□□□ -1.9
CCDC54-201ENST00000261058 B4DXG7 233 aa3.17□□□□□ -1.9
CCDC54-201ENST00000261058 KLRC4-KLRK1H3BQV0 150 aa3.17□□□□□ -1.9
CCDC54-201ENST00000261058 hCG_2039718K7EN88 272 aa3.17□□□□□ -1.9
CCDC54-201ENST00000261058 SIRPB1O00241 398 aa3.17□□□□□ -1.9
CCDC54-201ENST00000261058 ZBTB5O15062 677 aa3.17□□□□□ -1.9
CCDC54-201ENST00000261058 ACOX3O15254 700 aa3.17□□□□□ -1.9
CCDC54-201ENST00000261058 MSH4O15457 936 aa3.17□□□□□ -1.9
CCDC54-201ENST00000261058 NUPL2O15504 423 aaKnown RBP3.17□□□□□ -1.9
CCDC54-201ENST00000261058 EIF1BO60739 113 aaKnown RBP3.17□□□□□ -1.9
CCDC54-201ENST00000261058 CTNSO60931 367 aa3.17□□□□□ -1.9
CCDC54-201ENST00000261058 SCELO95171 688 aa3.17□□□□□ -1.9
CCDC54-201ENST00000261058 IGHG4P01861 327 aa3.17□□□□□ -1.9
CCDC54-201ENST00000261058 CRHP06850 196 aa3.17□□□□□ -1.9
CCDC54-201ENST00000261058 GUSBP08236 651 aa3.17□□□□□ -1.9
CCDC54-201ENST00000261058 ZDHHC11BP0C7U3 371 aa3.17□□□□□ -1.9
CCDC54-201ENST00000261058 GIMD1P0DJR0 217 aa3.17□□□□□ -1.9
CCDC54-201ENST00000261058 PSKH1P11801 424 aa3.17□□□□□ -1.9
CCDC54-201ENST00000261058 COX4I1P13073 169 aa3.17□□□□□ -1.9
CCDC54-201ENST00000261058 ZNF7P17097 686 aaPredicted RBP3.17□□□□□ -1.9
CCDC54-201ENST00000261058 PSMC3P17980 439 aa3.17□□□□□ -1.9
CCDC54-201ENST00000261058 CSKP41240 450 aa3.17□□□□□ -1.9
CCDC54-201ENST00000261058 EIF1P41567 113 aaKnown RBP3.17□□□□□ -1.9
CCDC54-201ENST00000261058 CX3CR1P49238 355 aa3.17□□□□□ -1.9
CCDC54-201ENST00000261058 EFNA3P52797 238 aa3.17□□□□□ -1.9
CCDC54-201ENST00000261058 ST3GAL3Q11203 375 aa3.17□□□□□ -1.9
CCDC54-201ENST00000261058 BAMBIQ13145 260 aa3.17□□□□□ -1.9
CCDC54-201ENST00000261058 ORC2Q13416 577 aaPredicted RBP3.17□□□□□ -1.9
CCDC54-201ENST00000261058 LAGE3Q14657 143 aa3.17□□□□□ -1.9
CCDC54-201ENST00000261058 GUK1Q16774 197 aa3.17□□□□□ -1.9
CCDC54-201ENST00000261058 OR2B11Q5JQS5 317 aa3.17□□□□□ -1.9
CCDC54-201ENST00000261058 FAHD2BQ6P2I3 314 aaPredicted RBP3.17□□□□□ -1.9
CCDC54-201ENST00000261058 CD300LGQ6UXG3 332 aa3.17□□□□□ -1.9
CCDC54-201ENST00000261058 LRRN1Q6UXK5 716 aa3.17□□□□□ -1.9
CCDC54-201ENST00000261058 SLC16A14Q7RTX9 510 aa3.17□□□□□ -1.9
CCDC54-201ENST00000261058 PRSS58Q8IYP2 241 aa3.17□□□□□ -1.9
CCDC54-201ENST00000261058 CADM2Q8N3J6 435 aa3.17□□□□□ -1.9
CCDC54-201ENST00000261058 ZNF561Q8N587 486 aa3.17□□□□□ -1.9
CCDC54-201ENST00000261058 DHRSXQ8N5I4 330 aa3.17□□□□□ -1.9
CCDC54-201ENST00000261058 OR2T33Q8NG76 320 aa3.17□□□□□ -1.9
CCDC54-201ENST00000261058 OR4F6Q8NGB9 312 aa3.17□□□□□ -1.9
CCDC54-201ENST00000261058 OR4D6Q8NGJ1 314 aa3.17□□□□□ -1.9
CCDC54-201ENST00000261058 ACTL9Q8TC94 416 aa3.17□□□□□ -1.9
CCDC54-201ENST00000261058 AP3S1Q92572 193 aa3.17□□□□□ -1.9
CCDC54-201ENST00000261058 MARC2Q969Z3 335 aa3.17□□□□□ -1.9
CCDC54-201ENST00000261058 TAMM41Q96BW9 452 aa3.17□□□□□ -1.9
CCDC54-201ENST00000261058 FAHD2AQ96GK7 314 aa3.17□□□□□ -1.9
CCDC54-201ENST00000261058 PACRGQ96M98 296 aaPredicted RBP3.17□□□□□ -1.9
CCDC54-201ENST00000261058 QKIQ96PU8 341 aaKnown RBP eCLIP3.17□□□□□ -1.9
CCDC54-201ENST00000261058 XPO6Q96QU8 1125 aaKnown RBP3.17□□□□□ -1.9
CCDC54-201ENST00000261058 SRRQ9GZT4 340 aa3.17□□□□□ -1.9
CCDC54-201ENST00000261058 UGT1A10Q9HAW8 530 aa3.17□□□□□ -1.9
CCDC54-201ENST00000261058 NMRAL1Q9HBL8 299 aa3.17□□□□□ -1.9
CCDC54-201ENST00000261058 NANSQ9NR45 359 aa3.17□□□□□ -1.9
CCDC54-201ENST00000261058 INPP5EQ9NRR6 644 aa3.17□□□□□ -1.9
CCDC54-201ENST00000261058 USE1Q9NZ43 259 aa3.17□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms