RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 COL4A6Q14031 1691 aa12.91□□□□□ -0.34
SDC1-201ENST00000254351 MBTPS2O43462 519 aa12.91□□□□□ -0.34
SDC1-201ENST00000254351 SLC16A7O60669 478 aa12.91□□□□□ -0.34
SDC1-201ENST00000254351 C1QL1O75973 258 aa12.91□□□□□ -0.34
SDC1-201ENST00000254351 KNG1P01042 644 aa12.91□□□□□ -0.34
SDC1-201ENST00000254351 CEBPBP17676 345 aa12.91□□□□□ -0.34
SDC1-201ENST00000254351 LAG3P18627 525 aa12.91□□□□□ -0.34
SDC1-201ENST00000254351 ALOX5APP20292 161 aa12.91□□□□□ -0.34
SDC1-201ENST00000254351 RAB32Q13637 225 aa12.91□□□□□ -0.34
SDC1-201ENST00000254351 ZNF77Q15935 545 aa12.91□□□□□ -0.34
SDC1-201ENST00000254351 Q6ZRG5 221 aa12.91□□□□□ -0.34
SDC1-201ENST00000254351 COX15Q7KZN9 410 aa12.91□□□□□ -0.34
SDC1-201ENST00000254351 OR13C3Q8NGS6 347 aa12.91□□□□□ -0.34
SDC1-201ENST00000254351 LPAR4Q99677 370 aa12.91□□□□□ -0.34
SDC1-201ENST00000254351 NMNAT2Q9BZQ4 307 aa12.91□□□□□ -0.34
SDC1-201ENST00000254351 ALX4Q9H161 411 aaPredicted RBP12.91□□□□□ -0.34
SDC1-201ENST00000254351 CENPMQ9NSP4 180 aa12.91□□□□□ -0.34
SDC1-201ENST00000254351 KIAA1549LQ6ZVL6 1849 aa12.9□□□□□ -0.34
SDC1-201ENST00000254351 FANCMQ8IYD8 2048 aa12.9□□□□□ -0.34
SDC1-201ENST00000254351 WISP1O95388 367 aa12.9□□□□□ -0.34
SDC1-201ENST00000254351 OR8U8P0C7N1 319 aa12.9□□□□□ -0.34
SDC1-201ENST00000254351 S100PP25815 95 aa12.9□□□□□ -0.34
SDC1-201ENST00000254351 BIKQ13323 160 aa12.9□□□□□ -0.34
SDC1-201ENST00000254351 FHL5Q5TD97 284 aa12.9□□□□□ -0.34
SDC1-201ENST00000254351 OR2A2Q6IF42 318 aa12.9□□□□□ -0.34
SDC1-201ENST00000254351 DNM1P46Q6ZS02 220 aa12.9□□□□□ -0.34
SDC1-201ENST00000254351 PGAP1Q75T13 922 aa12.9□□□□□ -0.34
SDC1-201ENST00000254351 ZNF550Q7Z398 422 aa12.9□□□□□ -0.34
SDC1-201ENST00000254351 RNF144BQ7Z419 303 aa12.9□□□□□ -0.34
SDC1-201ENST00000254351 ST7LQ8TDW4 575 aa12.9□□□□□ -0.34
SDC1-201ENST00000254351 MCHR2Q969V1 340 aa12.9□□□□□ -0.34
SDC1-201ENST00000254351 TSACCQ96A04 125 aaPredicted RBP12.9□□□□□ -0.34
SDC1-201ENST00000254351 KIRREL1Q96J84 757 aa12.9□□□□□ -0.34
SDC1-201ENST00000254351 TSPAN32Q96QS1 320 aa12.9□□□□□ -0.34
SDC1-201ENST00000254351 TAF9BQ9HBM6 251 aa12.9□□□□□ -0.34
SDC1-201ENST00000254351 SPACA1Q9HBV2 294 aa12.9□□□□□ -0.34
SDC1-201ENST00000254351 MMP24Q9Y5R2 645 aa12.9□□□□□ -0.34
SDC1-201ENST00000254351 H7C1Q1 480 aa12.9□□□□□ -0.34
SDC1-201ENST00000254351 GPR75O95800 540 aa12.9□□□□□ -0.34
SDC1-201ENST00000254351 S100A8P05109 93 aa12.9□□□□□ -0.34
SDC1-201ENST00000254351 CD14P08571 375 aa12.9□□□□□ -0.34
SDC1-201ENST00000254351 OR13C7P0DN81 318 aa12.9□□□□□ -0.34
SDC1-201ENST00000254351 PPP1CAP62136 330 aa12.9□□□□□ -0.34
SDC1-201ENST00000254351 RIPPLY1Q0D2K3 151 aa12.9□□□□□ -0.34
SDC1-201ENST00000254351 ZNHIT3Q15649 155 aaPredicted RBP12.9□□□□□ -0.34
SDC1-201ENST00000254351 DRAM2Q6UX65 266 aa12.9□□□□□ -0.34
SDC1-201ENST00000254351 CDC20BQ86Y33 519 aa12.9□□□□□ -0.34
SDC1-201ENST00000254351 C12orf76Q8N812 135 aaPredicted RBP12.9□□□□□ -0.34
SDC1-201ENST00000254351 OR9A4Q8NGU2 314 aa12.9□□□□□ -0.34
SDC1-201ENST00000254351 OR14C36Q8NHC7 312 aa12.9□□□□□ -0.34
SDC1-201ENST00000254351 MITD1Q8WV92 249 aa12.9□□□□□ -0.34
SDC1-201ENST00000254351 RSPRY1Q96DX4 576 aa12.9□□□□□ -0.34
SDC1-201ENST00000254351 PIGQQ9BRB3 760 aa12.9□□□□□ -0.34
SDC1-201ENST00000254351 ZNF426Q9BUY5 554 aa12.9□□□□□ -0.34
SDC1-201ENST00000254351 TGIF2Q9GZN2 237 aa12.9□□□□□ -0.34
SDC1-201ENST00000254351 RGCCQ9H4X1 137 aa12.9□□□□□ -0.34
SDC1-201ENST00000254351 SEC61A2Q9H9S3 476 aa12.9□□□□□ -0.34
SDC1-201ENST00000254351 A0A087WUJ7 227 aa12.89□□□□□ -0.35
SDC1-201ENST00000254351 TRBV5-7A0A0A0MS05 114 aa12.89□□□□□ -0.35
SDC1-201ENST00000254351 EDDM13A0A1B0GTR0 161 aa12.89□□□□□ -0.35
SDC1-201ENST00000254351 C7orf77A4D0Y5 90 aa12.89□□□□□ -0.35
SDC1-201ENST00000254351 CDC14CA4D256 554 aa12.89□□□□□ -0.35
SDC1-201ENST00000254351 WIPF3A6NGB9 483 aa12.89□□□□□ -0.35
SDC1-201ENST00000254351 IGHV2-70P01814 119 aa12.89□□□□□ -0.35
SDC1-201ENST00000254351 CAV2P51636 162 aa12.89□□□□□ -0.35
SDC1-201ENST00000254351 ZP2Q05996 745 aa12.89□□□□□ -0.35
SDC1-201ENST00000254351 SGCGQ13326 291 aa12.89□□□□□ -0.35
SDC1-201ENST00000254351 PTCRAQ6ISU1 281 aaPredicted RBP12.89□□□□□ -0.35
SDC1-201ENST00000254351 ADAMTSL4Q6UY14 1074 aa12.89□□□□□ -0.35
SDC1-201ENST00000254351 SLC25A42Q86VD7 318 aa12.89□□□□□ -0.35
SDC1-201ENST00000254351 RBM18Q96H35 190 aaKnown RBP12.89□□□□□ -0.35
SDC1-201ENST00000254351 OR10C1Q96KK4 312 aa12.89□□□□□ -0.35
SDC1-201ENST00000254351 IGKV1D-42A0A075B6H8 117 aa12.89□□□□□ -0.35
SDC1-201ENST00000254351 H0YGG7 62 aa12.89□□□□□ -0.35
SDC1-201ENST00000254351 EFSO43281 561 aa12.89□□□□□ -0.35
SDC1-201ENST00000254351 ACKR3P25106 362 aa12.89□□□□□ -0.35
SDC1-201ENST00000254351 ARF3P61204 181 aaPredicted RBP12.89□□□□□ -0.35
SDC1-201ENST00000254351 DMWDQ09019 674 aa12.89□□□□□ -0.35
SDC1-201ENST00000254351 TMEM31Q5JXX7 168 aa12.89□□□□□ -0.35
SDC1-201ENST00000254351 SLC35D3Q5M8T2 416 aa12.89□□□□□ -0.35
SDC1-201ENST00000254351 ZNF425Q6IV72 752 aa12.89□□□□□ -0.35
SDC1-201ENST00000254351 VITQ6UXI7 678 aa12.89□□□□□ -0.35
SDC1-201ENST00000254351 ZNF765Q7L2R6 523 aa12.89□□□□□ -0.35
SDC1-201ENST00000254351 DMBX1Q8NFW5 382 aa12.89□□□□□ -0.35
SDC1-201ENST00000254351 MRPL38Q96DV4 380 aaKnown RBP12.89□□□□□ -0.35
SDC1-201ENST00000254351 SERINC2Q96SA4 455 aa12.89□□□□□ -0.35
SDC1-201ENST00000254351 NICN1Q9BSH3 213 aa12.89□□□□□ -0.35
SDC1-201ENST00000254351 FGF22Q9HCT0 170 aa12.89□□□□□ -0.35
SDC1-201ENST00000254351 FBXO7Q9Y3I1 522 aa12.89□□□□□ -0.35
SDC1-201ENST00000254351 ZNF205O95201 554 aa12.88□□□□□ -0.35
SDC1-201ENST00000254351 CEACAM5P06731 702 aa12.88□□□□□ -0.35
SDC1-201ENST00000254351 ASCL1P50553 236 aa12.88□□□□□ -0.35
SDC1-201ENST00000254351 ASB5Q8WWX0 329 aa12.88□□□□□ -0.35
SDC1-201ENST00000254351 FAM3CQ92520 227 aa12.88□□□□□ -0.35
SDC1-201ENST00000254351 BADQ92934 168 aa12.88□□□□□ -0.35
SDC1-201ENST00000254351 S100PBPQ96BU1 408 aa12.88□□□□□ -0.35
SDC1-201ENST00000254351 NUDT9Q9BW91 350 aa12.88□□□□□ -0.35
SDC1-201ENST00000254351 PRO1933Q9H354 126 aa12.88□□□□□ -0.35
SDC1-201ENST00000254351 PTGES2Q9H7Z7 377 aa12.88□□□□□ -0.35
SDC1-201ENST00000254351 PHPT1Q9NRX4 125 aaPredicted RBP12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms