RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 A0A1W2PRM7 423 aa11.92□□□□□ -0.5
CLN3-249ENST00000636685 F5H5P2 479 aa11.92□□□□□ -0.5
CLN3-249ENST00000636685 SHBGP04278 402 aa11.92□□□□□ -0.5
CLN3-249ENST00000636685 ACADSP16219 412 aa11.92□□□□□ -0.5
CLN3-249ENST00000636685 LAP3P28838 519 aa11.92□□□□□ -0.5
CLN3-249ENST00000636685 FAM27BQ5VT28 67 aa11.92□□□□□ -0.5
CLN3-249ENST00000636685 RANBP3LQ86VV4 465 aaPredicted RBP11.92□□□□□ -0.5
CLN3-249ENST00000636685 IFT20Q8IY31 132 aa11.92□□□□□ -0.5
CLN3-249ENST00000636685 WFDC9Q8NEX5 89 aa11.92□□□□□ -0.5
CLN3-249ENST00000636685 OR4C13Q8NGP0 309 aa11.92□□□□□ -0.5
CLN3-249ENST00000636685 OR5R1Q8NH85 324 aa11.92□□□□□ -0.5
CLN3-249ENST00000636685 OR2T6Q8NHC8 308 aa11.92□□□□□ -0.5
CLN3-249ENST00000636685 BBS10Q8TAM1 723 aa11.92□□□□□ -0.5
CLN3-249ENST00000636685 ASB10Q8WXI3 467 aa11.92□□□□□ -0.5
CLN3-249ENST00000636685 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.92□□□□□ -0.55e-8■■■■■ 65.3
CLN3-249ENST00000636685 VPS33AQ96AX1 596 aa11.92□□□□□ -0.5
CLN3-249ENST00000636685 NANSQ9NR45 359 aa11.92□□□□□ -0.5
CLN3-249ENST00000636685 TBCCD1Q9NVR7 557 aa11.92□□□□□ -0.5
CLN3-249ENST00000636685 CAB39Q9Y376 341 aaPredicted RBP11.92□□□□□ -0.5
CLN3-249ENST00000636685 TIMM10BQ9Y5J6 103 aa11.92□□□□□ -0.5
CLN3-249ENST00000636685 U3KQK5 164 aa11.92□□□□□ -0.5
CLN3-249ENST00000636685 MCIDASD6RGH6 385 aa11.91□□□□□ -0.5
CLN3-249ENST00000636685 MLNRO43193 412 aa11.91□□□□□ -0.5
CLN3-249ENST00000636685 SASH3O75995 380 aa11.91□□□□□ -0.5
CLN3-249ENST00000636685 F13BP05160 661 aa11.91□□□□□ -0.5
CLN3-249ENST00000636685 IRF2P14316 349 aa11.91□□□□□ -0.5
CLN3-249ENST00000636685 RGS8P57771 180 aaPredicted RBP11.91□□□□□ -0.5
CLN3-249ENST00000636685 GUCY1A3Q02108 690 aa11.91□□□□□ -0.5
CLN3-249ENST00000636685 OR2T2Q6IF00 324 aa11.91□□□□□ -0.5
CLN3-249ENST00000636685 DHRS4L2Q6PKH6 230 aa11.91□□□□□ -0.5
CLN3-249ENST00000636685 NDUFA11Q86Y39 141 aa11.91□□□□□ -0.5
CLN3-249ENST00000636685 EIF1ADQ8N9N8 165 aaKnown RBP11.91□□□□□ -0.5
CLN3-249ENST00000636685 OR13G1Q8NGZ3 307 aa11.91□□□□□ -0.5
CLN3-249ENST00000636685 PTP4A1Q93096 173 aa11.91□□□□□ -0.5
CLN3-249ENST00000636685 NMD3Q96D46 503 aaKnown RBP11.91□□□□□ -0.5
CLN3-249ENST00000636685 CITED2Q99967 270 aaPredicted RBP11.91□□□□□ -0.5
CLN3-249ENST00000636685 NUF2Q9BZD4 464 aa11.91□□□□□ -0.5
CLN3-249ENST00000636685 CNTD2Q9H8S5 307 aa11.91□□□□□ -0.5
CLN3-249ENST00000636685 HYDINQ4G0P3 5121 aa11.91□□□□□ -0.5
CLN3-249ENST00000636685 CENPBD1B2RD01 187 aa11.9□□□□□ -0.5
CLN3-249ENST00000636685 KPNA4O00629 521 aaPredicted RBP11.9□□□□□ -0.5
CLN3-249ENST00000636685 ADAM20O43506 726 aa11.9□□□□□ -0.5
CLN3-249ENST00000636685 ITM2AO43736 263 aa11.9□□□□□ -0.5
CLN3-249ENST00000636685 OR10H3O60404 316 aa11.9□□□□□ -0.5
CLN3-249ENST00000636685 FCN3O75636 299 aa11.9□□□□□ -0.5
CLN3-249ENST00000636685 CST2P09228 141 aa11.9□□□□□ -0.5
CLN3-249ENST00000636685 ALDOCP09972 364 aaKnown RBP11.9□□□□□ -0.5
CLN3-249ENST00000636685 FAM153BP0C7A2 387 aa11.9□□□□□ -0.5
CLN3-249ENST00000636685 LBPP18428 481 aa11.9□□□□□ -0.5
CLN3-249ENST00000636685 TUBG1P23258 451 aa11.9□□□□□ -0.5
CLN3-249ENST00000636685 DLX1P56177 255 aa11.9□□□□□ -0.5
CLN3-249ENST00000636685 LRRC74AQ0VAA2 488 aa11.9□□□□□ -0.5
CLN3-249ENST00000636685 LY6EQ16553 131 aa11.9□□□□□ -0.5
CLN3-249ENST00000636685 HSP90B2PQ58FF3 399 aa11.9□□□□□ -0.5
CLN3-249ENST00000636685 C1orf94Q6P1W5 598 aa11.9□□□□□ -0.5
CLN3-249ENST00000636685 LINC00114Q6XXX2 140 aa11.9□□□□□ -0.5
CLN3-249ENST00000636685 BTN2A1Q7KYR7 527 aa11.9□□□□□ -0.5
CLN3-249ENST00000636685 ZNF781Q8N8C0 355 aa11.9□□□□□ -0.5
CLN3-249ENST00000636685 OR8G5Q8NG78 346 aa11.9□□□□□ -0.5
CLN3-249ENST00000636685 APOPT1Q96IL0 206 aa11.9□□□□□ -0.5
CLN3-249ENST00000636685 CLPTM1LQ96KA5 538 aa11.9□□□□□ -0.5
CLN3-249ENST00000636685 TXLNGYQ9BZA5 131 aa11.9□□□□□ -0.5
CLN3-249ENST00000636685 CENPHQ9H3R5 247 aa11.9□□□□□ -0.5
CLN3-249ENST00000636685 MED4Q9NPJ6 270 aa11.9□□□□□ -0.5
CLN3-249ENST00000636685 TUBG2Q9NRH3 451 aa11.9□□□□□ -0.5
CLN3-249ENST00000636685 THUMPD1Q9NXG2 353 aaKnown RBP11.9□□□□□ -0.5
CLN3-249ENST00000636685 DNAJB11Q9UBS4 358 aa11.9□□□□□ -0.5
CLN3-249ENST00000636685 A0A1W2PRG6 482 aa11.89□□□□□ -0.51
CLN3-249ENST00000636685 ELOVL7A1L3X0 281 aa11.89□□□□□ -0.51
CLN3-249ENST00000636685 C5orf58C9J3I9 102 aa11.89□□□□□ -0.51
CLN3-249ENST00000636685 BLOC1S5-TXNDC5H3BN57 136 aa11.89□□□□□ -0.51
CLN3-249ENST00000636685 H3BUX3 64 aa11.89□□□□□ -0.51
CLN3-249ENST00000636685 NPFFO15130 113 aa11.89□□□□□ -0.51
CLN3-249ENST00000636685 FAM20BO75063 409 aa11.89□□□□□ -0.51
CLN3-249ENST00000636685 ANP32DO95626 131 aa11.89□□□□□ -0.51
CLN3-249ENST00000636685 PAHP00439 452 aa11.89□□□□□ -0.51
CLN3-249ENST00000636685 HIST1H2ABP04908 130 aa11.89□□□□□ -0.51
CLN3-249ENST00000636685 ASAH2BP0C7U1 165 aa11.89□□□□□ -0.51
CLN3-249ENST00000636685 UMPSP11172 480 aa11.89□□□□□ -0.51
CLN3-249ENST00000636685 ETS2P15036 469 aa11.89□□□□□ -0.51
CLN3-249ENST00000636685 RAC2P15153 192 aa11.89□□□□□ -0.51
CLN3-249ENST00000636685 RPL4P36578 427 aaKnown RBP11.89□□□□□ -0.51
CLN3-249ENST00000636685 UGT2B15P54855 530 aa11.89□□□□□ -0.51
CLN3-249ENST00000636685 SWT1Q5T5J6 900 aaKnown RBP11.89□□□□□ -0.51
CLN3-249ENST00000636685 SFRP4Q6FHJ7 346 aaPredicted RBP11.89□□□□□ -0.51
CLN3-249ENST00000636685 SLC25A47Q6Q0C1 308 aa11.89□□□□□ -0.51
CLN3-249ENST00000636685 HIST3H2AQ7L7L0 130 aa11.89□□□□□ -0.51
CLN3-249ENST00000636685 NANOGNBQ7Z5D8 188 aa11.89□□□□□ -0.51
CLN3-249ENST00000636685 IGFN1Q86VF2 1251 aa11.89□□□□□ -0.51
CLN3-249ENST00000636685 PNKDQ8N490 385 aa11.89□□□□□ -0.51
CLN3-249ENST00000636685 EPS8L3Q8TE67 593 aaKnown RBP11.89□□□□□ -0.51
CLN3-249ENST00000636685 NPRL2Q8WTW4 380 aa11.89□□□□□ -0.51
CLN3-249ENST00000636685 HDAC2Q92769 488 aaKnown RBP11.89□□□□□ -0.51
CLN3-249ENST00000636685 HIST1H2ACQ93077 130 aa11.89□□□□□ -0.51
CLN3-249ENST00000636685 SLCO1B3Q9NPD5 702 aa11.89□□□□□ -0.51
CLN3-249ENST00000636685 SIRT7Q9NRC8 400 aa11.89□□□□□ -0.51
CLN3-249ENST00000636685 ZNF229Q9UJW7 825 aa11.89□□□□□ -0.51
CLN3-249ENST00000636685 NDRG4Q9ULP0 352 aaKnown RBP11.89□□□□□ -0.51
CLN3-249ENST00000636685 A0A1B0GVI7 797 aa11.88□□□□□ -0.51
CLN3-249ENST00000636685 FMO6PO60774 539 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms