RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 OR5F1O95221 314 aa5.08□□□□□ -1.6
VRK3-220ENST00000600259 ABHD16AO95870 558 aa5.08□□□□□ -1.6
VRK3-220ENST00000600259 CYB5R3P00387 301 aaPredicted RBP5.08□□□□□ -1.6
VRK3-220ENST00000600259 MELTFP08582 738 aa5.08□□□□□ -1.6
VRK3-220ENST00000600259 RAC2P15153 192 aa5.08□□□□□ -1.6
VRK3-220ENST00000600259 ZNF26P17031 533 aaPredicted RBP5.08□□□□□ -1.6
VRK3-220ENST00000600259 TNFSF4P23510 183 aa5.08□□□□□ -1.6
VRK3-220ENST00000600259 PSMB10P40306 273 aa5.08□□□□□ -1.6
VRK3-220ENST00000600259 ARHGDIAP52565 204 aa5.08□□□□□ -1.6
VRK3-220ENST00000600259 MTPNP58546 118 aa5.08□□□□□ -1.6
VRK3-220ENST00000600259 BPIFB3P59826 476 aa5.08□□□□□ -1.6
VRK3-220ENST00000600259 STX1BP61266 288 aa5.08□□□□□ -1.6
VRK3-220ENST00000600259 FGF12P61328 243 aa5.08□□□□□ -1.6
VRK3-220ENST00000600259 PCBD1P61457 104 aa5.08□□□□□ -1.6
VRK3-220ENST00000600259 CD47Q08722 323 aa5.08□□□□□ -1.6
VRK3-220ENST00000600259 HLXQ14774 488 aaPredicted RBP5.08□□□□□ -1.6
VRK3-220ENST00000600259 TAF11Q15544 211 aa5.08□□□□□ -1.6
VRK3-220ENST00000600259 ZNF404Q494X3 552 aa5.08□□□□□ -1.6
VRK3-220ENST00000600259 CCDC92Q53HC0 331 aaPredicted RBP5.08□□□□□ -1.6
VRK3-220ENST00000600259 FBLN7Q53RD9 439 aa5.08□□□□□ -1.6
VRK3-220ENST00000600259 ZMAT1Q5H9K5 638 aa5.08□□□□□ -1.6
VRK3-220ENST00000600259 FAM205BPQ63HN1 556 aa5.08□□□□□ -1.6
VRK3-220ENST00000600259 WDR25Q64LD2 544 aaPredicted RBP5.08□□□□□ -1.6
VRK3-220ENST00000600259 SLC27A4Q6P1M0 643 aa5.08□□□□□ -1.6
VRK3-220ENST00000600259 FIP1L1Q6UN15 594 aaKnown RBP5.08□□□□□ -1.6
VRK3-220ENST00000600259 FBXW12Q6X9E4 464 aa5.08□□□□□ -1.6
VRK3-220ENST00000600259 VASH1Q7L8A9 365 aaPredicted RBP5.08□□□□□ -1.6
VRK3-220ENST00000600259 HDDC2Q7Z4H3 204 aa5.08□□□□□ -1.6
VRK3-220ENST00000600259 CALHM3Q86XJ0 350 aa5.08□□□□□ -1.6
VRK3-220ENST00000600259 MUC20Q8N307 709 aaPredicted RBP5.08□□□□□ -1.6
VRK3-220ENST00000600259 PCYOX1LQ8NBM8 494 aa5.08□□□□□ -1.6
VRK3-220ENST00000600259 NPEPL1Q8NDH3 523 aa5.08□□□□□ -1.6
VRK3-220ENST00000600259 LINC01006Q8NI28 216 aa5.08□□□□□ -1.6
VRK3-220ENST00000600259 TMEM239Q8WW34 195 aa5.08□□□□□ -1.6
VRK3-220ENST00000600259 NEIL1Q96FI4 390 aaPredicted RBP5.08□□□□□ -1.6
VRK3-220ENST00000600259 C7orf26Q96N11 449 aa5.08□□□□□ -1.6
VRK3-220ENST00000600259 NUDT16L1Q9BRJ7 211 aaKnown RBP5.08□□□□□ -1.6
VRK3-220ENST00000600259 WACQ9BTA9 647 aa5.08□□□□□ -1.6
VRK3-220ENST00000600259 MARCH7Q9H992 704 aa5.08□□□□□ -1.6
VRK3-220ENST00000600259 EMC7Q9NPA0 242 aa5.08□□□□□ -1.6
VRK3-220ENST00000600259 STX18Q9P2W9 335 aaKnown RBP5.08□□□□□ -1.6
VRK3-220ENST00000600259 MIOXQ9UGB7 285 aa5.08□□□□□ -1.6
VRK3-220ENST00000600259 OR5V1Q9UGF6 321 aa5.08□□□□□ -1.6
VRK3-220ENST00000600259 NOL12Q9UGY1 213 aaKnown RBP eCLIP5.08□□□□□ -1.6
VRK3-220ENST00000600259 NDRG4Q9ULP0 352 aaKnown RBP5.08□□□□□ -1.6
VRK3-220ENST00000600259 V9GYY5 206 aaPredicted RBP5.08□□□□□ -1.6
VRK3-220ENST00000600259 NOTCH3Q9UM47 2321 aa5.07□□□□□ -1.6
VRK3-220ENST00000600259 CENPVL3A0A0U1RRI6 287 aa5.07□□□□□ -1.6
VRK3-220ENST00000600259 GMNCA6NCL1 334 aa5.07□□□□□ -1.6
VRK3-220ENST00000600259 OR6C6A6NF89 314 aa5.07□□□□□ -1.6
VRK3-220ENST00000600259 C12orf71A8MTZ7 269 aa5.07□□□□□ -1.6
VRK3-220ENST00000600259 SURF4O15260 269 aa5.07□□□□□ -1.6
VRK3-220ENST00000600259 POLR3GO15318 223 aaPredicted RBP5.07□□□□□ -1.6
VRK3-220ENST00000600259 SGCEO43556 437 aa5.07□□□□□ -1.6
VRK3-220ENST00000600259 PIP5K1CO60331 668 aa5.07□□□□□ -1.6
VRK3-220ENST00000600259 SHOX2O60902 331 aaPredicted RBP5.07□□□□□ -1.6
VRK3-220ENST00000600259 TSPAN15O95858 294 aa5.07□□□□□ -1.6
VRK3-220ENST00000600259 SFTPBP07988 381 aa5.07□□□□□ -1.6
VRK3-220ENST00000600259 DBHP09172 617 aa5.07□□□□□ -1.6
VRK3-220ENST00000600259 GSTM3P21266 225 aa5.07□□□□□ -1.6
VRK3-220ENST00000600259 MSR1P21757 451 aa5.07□□□□□ -1.6
VRK3-220ENST00000600259 GATA4P43694 442 aa5.07□□□□□ -1.6
VRK3-220ENST00000600259 RAD23AP54725 363 aa5.07□□□□□ -1.6
VRK3-220ENST00000600259 CTXN1P60606 82 aa5.07□□□□□ -1.6
VRK3-220ENST00000600259 MAGOHP61326 146 aaKnown RBP5.07□□□□□ -1.6
VRK3-220ENST00000600259 GNB2P62879 340 aa5.07□□□□□ -1.6
VRK3-220ENST00000600259 HIST1H3AP68431 136 aa5.07□□□□□ -1.6
VRK3-220ENST00000600259 HOXA4Q00056 320 aaPredicted RBP5.07□□□□□ -1.6
VRK3-220ENST00000600259 MAB21L1Q13394 359 aa5.07□□□□□ -1.6
VRK3-220ENST00000600259 TAF9Q16594 264 aa5.07□□□□□ -1.6
VRK3-220ENST00000600259 VMACQ2NL98 169 aa5.07□□□□□ -1.6
VRK3-220ENST00000600259 ALG10Q5BKT4 473 aa5.07□□□□□ -1.6
VRK3-220ENST00000600259 CLEC12AQ5QGZ9 265 aa5.07□□□□□ -1.6
VRK3-220ENST00000600259 INTS11Q5TA45 600 aaKnown RBP5.07□□□□□ -1.6
VRK3-220ENST00000600259 HIST2H3PS2Q5TEC6 136 aa5.07□□□□□ -1.6
VRK3-220ENST00000600259 OTPQ5XKR4 325 aa5.07□□□□□ -1.6
VRK3-220ENST00000600259 RUSC1-AS1Q66K80 236 aa5.07□□□□□ -1.6
VRK3-220ENST00000600259 OR2T2Q6IF00 324 aa5.07□□□□□ -1.6
VRK3-220ENST00000600259 BRICD5Q6PL45 260 aa5.07□□□□□ -1.6
VRK3-220ENST00000600259 ARL9Q6T311 187 aa5.07□□□□□ -1.6
VRK3-220ENST00000600259 BTNL3Q6UXE8 466 aa5.07□□□□□ -1.6
VRK3-220ENST00000600259 ZNF620Q6ZNG0 422 aa5.07□□□□□ -1.6
VRK3-220ENST00000600259 C17orf107Q6ZR85 190 aa5.07□□□□□ -1.6
VRK3-220ENST00000600259 COLCA1Q6ZS62 124 aa5.07□□□□□ -1.6
VRK3-220ENST00000600259 HIST2H3AQ71DI3 136 aa5.07□□□□□ -1.6
VRK3-220ENST00000600259 DHDDSQ86SQ9 333 aa5.07□□□□□ -1.6
VRK3-220ENST00000600259 CROCCP2Q86T23 111 aa5.07□□□□□ -1.6
VRK3-220ENST00000600259 IGFN1Q86VF2 1251 aa5.07□□□□□ -1.6
VRK3-220ENST00000600259 C1QL4Q86Z23 238 aa5.07□□□□□ -1.6
VRK3-220ENST00000600259 SLC30A8Q8IWU4 369 aa5.07□□□□□ -1.6
VRK3-220ENST00000600259 ATG16L2Q8NAA4 619 aa5.07□□□□□ -1.6
VRK3-220ENST00000600259 ZSCAN4Q8NAM6 433 aaPredicted RBP5.07□□□□□ -1.6
VRK3-220ENST00000600259 FAM156AQ8NDB6 213 aa5.07□□□□□ -1.6
VRK3-220ENST00000600259 OR8G5Q8NG78 346 aa5.07□□□□□ -1.6
VRK3-220ENST00000600259 OR13G1Q8NGZ3 307 aa5.07□□□□□ -1.6
VRK3-220ENST00000600259 OR10A6Q8NH74 314 aa5.07□□□□□ -1.6
VRK3-220ENST00000600259 FNDC8Q8TC99 324 aa5.07□□□□□ -1.6
VRK3-220ENST00000600259 THOC1Q96FV9 657 aaKnown RBP5.07□□□□□ -1.6
VRK3-220ENST00000600259 FAM71F1Q96KD3 344 aaPredicted RBP5.07□□□□□ -1.6
VRK3-220ENST00000600259 CCT8L2Q96SF2 557 aa5.07□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms