RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 CTDSPLO15194 276 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 DHHO43323 396 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 CXCL13O43927 109 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 NME2P1O60361 137 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 F10P00742 488 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 HNRNPCP07910 306 aaKnown RBP eCLIP12.57□□□□□ -0.4
LIG3-205ENST00000585941 SP1P08047 785 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 CD46P15529 392 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 ADRA2CP18825 462 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 NME2P22392 152 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 HSD11B1P28845 292 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 CDAP32320 146 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 PSMA6P60900 246 aaKnown RBP12.57□□□□□ -0.4
LIG3-205ENST00000585941 GRB2P62993 217 aaKnown RBP12.57□□□□□ -0.4
LIG3-205ENST00000585941 MFAP5Q13361 173 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 TAB1Q15750 504 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 ODF4Q2M2E3 257 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 HYAL4Q2M3T9 481 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 HES5Q5TA89 166 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 SLC25A25Q6KCM7 469 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 NRARPQ7Z6K4 114 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 MDS2Q8NDY4 140 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 C15orf40Q8WUR7 153 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 SNRNP27Q8WVK2 155 aaKnown RBP12.57□□□□□ -0.4
LIG3-205ENST00000585941 ORAI1Q96D31 301 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 ABCG5Q9H222 651 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 LIN7BQ9HAP6 207 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 FAM206AQ9NX38 181 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 PAQR5Q9NXK6 330 aaPredicted RBP12.57□□□□□ -0.4
LIG3-205ENST00000585941 FLVCR1Q9Y5Y0 555 aa12.57□□□□□ -0.4
LIG3-205ENST00000585941 WDFY3Q8IZQ1 3526 aa12.56□□□□□ -0.4
LIG3-205ENST00000585941 PTPRBP23467 1997 aa12.56□□□□□ -0.4
LIG3-205ENST00000585941 TRAV8-7A0A075B6U6 113 aa12.56□□□□□ -0.4
LIG3-205ENST00000585941 LOC107986453A0A1B0GWG9 222 aa12.56□□□□□ -0.4
LIG3-205ENST00000585941 CEACAM1P13688 526 aa12.56□□□□□ -0.4
LIG3-205ENST00000585941 SPNP16150 400 aa12.56□□□□□ -0.4
LIG3-205ENST00000585941 EIF1AXP47813 144 aaKnown RBP12.56□□□□□ -0.4
LIG3-205ENST00000585941 MMP15P51511 669 aa12.56□□□□□ -0.4
LIG3-205ENST00000585941 CFAP77Q6ZQR2 320 aa12.56□□□□□ -0.4
LIG3-205ENST00000585941 UBQLNLQ8IYU4 475 aa12.56□□□□□ -0.4
LIG3-205ENST00000585941 ELMOD2Q8IZ81 293 aa12.56□□□□□ -0.4
LIG3-205ENST00000585941 CADM3Q8N126 398 aa12.56□□□□□ -0.4
LIG3-205ENST00000585941 GJC3Q8NFK1 279 aa12.56□□□□□ -0.4
LIG3-205ENST00000585941 OR13C3Q8NGS6 347 aa12.56□□□□□ -0.4
LIG3-205ENST00000585941 RFT1Q96AA3 541 aa12.56□□□□□ -0.4
LIG3-205ENST00000585941 ZC3HAV1LQ96H79 300 aaKnown RBP12.56□□□□□ -0.4
LIG3-205ENST00000585941 TTTY12Q9BZ98 90 aa12.56□□□□□ -0.4
LIG3-205ENST00000585941 ULBP2Q9BZM5 246 aa12.56□□□□□ -0.4
LIG3-205ENST00000585941 ASH2LQ9UBL3 628 aa12.56□□□□□ -0.4
LIG3-205ENST00000585941 STEAP1Q9UHE8 339 aa12.56□□□□□ -0.4
LIG3-205ENST00000585941 NUFIP1Q9UHK0 495 aaKnown RBP12.56□□□□□ -0.4
LIG3-205ENST00000585941 CDV3Q9UKY7 258 aaKnown RBP12.56□□□□□ -0.4
LIG3-205ENST00000585941 PHF3Q92576 2039 aaKnown RBP12.56□□□□□ -0.4
LIG3-205ENST00000585941 ZNF716A6NP11 495 aa12.55□□□□□ -0.4
LIG3-205ENST00000585941 SULT1B1O43704 296 aa12.55□□□□□ -0.4
LIG3-205ENST00000585941 CYTIPO60759 359 aa12.55□□□□□ -0.4
LIG3-205ENST00000585941 MAS1P04201 325 aa12.55□□□□□ -0.4
LIG3-205ENST00000585941 CTSSP25774 331 aa12.55□□□□□ -0.4
LIG3-205ENST00000585941 RANBP1P43487 201 aa12.55□□□□□ -0.4
LIG3-205ENST00000585941 RFX2P48378 723 aa12.55□□□□□ -0.4
LIG3-205ENST00000585941 MRPS34P82930 218 aaKnown RBP12.55□□□□□ -0.4
LIG3-205ENST00000585941 PLGLB1Q02325 96 aa12.55□□□□□ -0.4
LIG3-205ENST00000585941 BCL2A1Q16548 175 aa12.55□□□□□ -0.4
LIG3-205ENST00000585941 SGCAQ16586 387 aa12.55□□□□□ -0.4
LIG3-205ENST00000585941 GLT8D1Q68CQ7 371 aa12.55□□□□□ -0.4
LIG3-205ENST00000585941 OR10S1Q8NGN2 331 aa12.55□□□□□ -0.4
LIG3-205ENST00000585941 HAS2Q92819 552 aa12.55□□□□□ -0.4
LIG3-205ENST00000585941 S100A16Q96FQ6 103 aaKnown RBP12.55□□□□□ -0.4
LIG3-205ENST00000585941 NEURL2Q9BR09 285 aa12.55□□□□□ -0.4
LIG3-205ENST00000585941 THAP7Q9BT49 309 aaPredicted RBP12.55□□□□□ -0.4
LIG3-205ENST00000585941 PBOV1Q9GZY1 135 aa12.55□□□□□ -0.4
LIG3-205ENST00000585941 HDHD2Q9H0R4 259 aa12.55□□□□□ -0.4
LIG3-205ENST00000585941 C11orf54Q9H0W9 315 aaPredicted RBP12.55□□□□□ -0.4
LIG3-205ENST00000585941 PLA2G3Q9NZ20 509 aa12.55□□□□□ -0.4
LIG3-205ENST00000585941 A0A0B4J203 849 aa12.54□□□□□ -0.4
LIG3-205ENST00000585941 ARGFXA6NJG6 315 aa12.54□□□□□ -0.4
LIG3-205ENST00000585941 H0YC42 278 aa12.54□□□□□ -0.4
LIG3-205ENST00000585941 PLA2G10O15496 165 aa12.54□□□□□ -0.4
LIG3-205ENST00000585941 GSTZ1O43708 216 aaPredicted RBP12.54□□□□□ -0.4
LIG3-205ENST00000585941 GLSO94925 669 aaPredicted RBP12.54□□□□□ -0.4
LIG3-205ENST00000585941 APOC1P02654 83 aa12.54□□□□□ -0.4
LIG3-205ENST00000585941 IGFBP3P17936 291 aaPredicted RBP12.54□□□□□ -0.4
LIG3-205ENST00000585941 MAP2K3P46734 347 aa12.54□□□□□ -0.4
LIG3-205ENST00000585941 STARP49675 285 aa12.54□□□□□ -0.4
LIG3-205ENST00000585941 SELENOPP49908 381 aa12.54□□□□□ -0.4
LIG3-205ENST00000585941 CAPZA1P52907 286 aa12.54□□□□□ -0.4
LIG3-205ENST00000585941 ART1P52961 327 aa12.54□□□□□ -0.4
LIG3-205ENST00000585941 CLDN15P56746 228 aa12.54□□□□□ -0.4
LIG3-205ENST00000585941 RIPPLY2Q5TAB7 128 aa12.54□□□□□ -0.4
LIG3-205ENST00000585941 FCRLAQ7L513 359 aa12.54□□□□□ -0.4
LIG3-205ENST00000585941 AAED1Q7RTV5 226 aa12.54□□□□□ -0.4
LIG3-205ENST00000585941 MEIOBQ8N635 442 aa12.54□□□□□ -0.4
LIG3-205ENST00000585941 ENKURQ8TC29 256 aa12.54□□□□□ -0.4
LIG3-205ENST00000585941 PPP1R14AQ96A00 147 aa12.54□□□□□ -0.4
LIG3-205ENST00000585941 DDX28Q9NUL7 540 aaKnown RBP12.54□□□□□ -0.4
LIG3-205ENST00000585941 RBFOX1Q9NWB1 397 aaKnown RBP12.54□□□□□ -0.4
LIG3-205ENST00000585941 LINC00854A0A1B0GVQ3 168 aa12.54□□□□□ -0.4
LIG3-205ENST00000585941 SLC17A2O00624 439 aa12.54□□□□□ -0.4
LIG3-205ENST00000585941 LYRM1O43325 122 aa12.54□□□□□ -0.4
LIG3-205ENST00000585941 TTRP02766 147 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms