RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 INPP5JQ15735 1006 aaPredicted RBP5.31□□□□□ -1.56
VPS53-212ENST00000572259 IMPG1Q17R60 797 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 ODF4Q2M2E3 257 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 UGT3A2Q3SY77 523 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 UNC50Q53HI1 259 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 ACER2Q5QJU3 275 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 FAM71F2Q6NXP2 309 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 ZNF793Q6ZN11 406 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 ZNF841Q6ZN19 808 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 Q6ZS92 163 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 RPS19BP1Q86WX3 136 aaKnown RBP5.31□□□□□ -1.56
VPS53-212ENST00000572259 NUDCD3Q8IVD9 361 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 MMD2Q8IY49 270 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 MREGQ8N565 214 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 TMEM178AQ8NBL3 297 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 MORN4Q8NDC4 146 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 TMEM104Q8NE00 496 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 B3GNT7Q8NFL0 401 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 OR52B6Q8NGF0 335 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 OR51G2Q8NGK0 314 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 OR5L2Q8NGL0 311 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 AENQ8WTP8 325 aaKnown RBP5.31□□□□□ -1.56
VPS53-212ENST00000572259 CACNG8Q8WXS5 425 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 TSLPQ969D9 159 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 AMDHD1Q96NU7 426 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 MAPKAP1Q9BPZ7 522 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 UTP23Q9BRU9 249 aaKnown RBP5.31□□□□□ -1.56
VPS53-212ENST00000572259 TTYH2Q9BSA4 534 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 TMEM109Q9BVC6 243 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 FAIM2Q9BWQ8 316 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 ANGPTL4Q9BY76 406 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 PRSS22Q9GZN4 317 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 FAM234AQ9H0X4 552 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 RIMS4Q9H426 269 aaPredicted RBP5.31□□□□□ -1.56
VPS53-212ENST00000572259 C5orf66Q9H5L9 145 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 CLMPQ9H6B4 373 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 DDX31Q9H8H2 851 aaKnown RBP5.31□□□□□ -1.56
VPS53-212ENST00000572259 IL1RL2Q9HB29 575 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 EML4Q9HC35 981 aaKnown RBP5.31□□□□□ -1.56
VPS53-212ENST00000572259 PNRC2Q9NPJ4 139 aaKnown RBP5.31□□□□□ -1.56
VPS53-212ENST00000572259 MED17Q9NVC6 651 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 PLLPQ9Y342 182 aa5.31□□□□□ -1.56
VPS53-212ENST00000572259 SPTAN1Q13813 2472 aaKnown RBP5.31□□□□□ -1.56
VPS53-212ENST00000572259 FREM3P0C091 2139 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 ZNF407Q9C0G0 2248 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 GCN1Q92616 2671 aaKnown RBP5.3□□□□□ -1.56
VPS53-212ENST00000572259 IGKV3D-11A0A0A0MRZ8 115 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 ATP6AP2A0A1C7CYW4 349 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 OR5H15A6NDH6 313 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 E5RGE8 158 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 MANBAO00462 879 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 FBP2O00757 339 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 PLPP1O14494 284 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 WNT9BO14905 357 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 GPR137BO60478 399 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 PLIN3O60664 434 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 GPR75O95800 540 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 TBX6O95947 436 aaPredicted RBP5.3□□□□□ -1.56
VPS53-212ENST00000572259 PDYNP01213 254 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 CRYABP02511 175 aaKnown RBP5.3□□□□□ -1.56
VPS53-212ENST00000572259 KLK1P06870 262 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 ETS2P15036 469 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 TSPAN8P19075 237 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 STOMP27105 288 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 BDKRB2P30411 391 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 CYB561P49447 251 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 MLLT10P55197 1068 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 CLDN20P56880 219 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 PLP1P60201 277 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 VBP1P61758 197 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 OC90Q02509 493 aaPredicted RBP5.3□□□□□ -1.56
VPS53-212ENST00000572259 TRAF3Q13114 568 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 FADDQ13158 208 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 PSG3Q16557 428 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 ZSCAN26Q16670 478 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 SPIN4Q56A73 249 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 SAPCD1Q5SSQ6 148 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 RTL6Q6ICC9 239 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 OR4A47Q6IF82 309 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 OR52E8Q6IFG1 317 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 ADNP2Q6IQ32 1131 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 HSDL2Q6YN16 418 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 SH2D5Q6ZV89 423 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 PATL1Q86TB9 770 aaKnown RBP5.3□□□□□ -1.56
VPS53-212ENST00000572259 KIRREL3Q8IZU9 778 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 C4orf33Q8N1A6 199 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 METTL4Q8N3J2 472 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 TMEM156Q8N614 296 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 NPEPL1Q8NDH3 523 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 OR51L1Q8NGJ5 315 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 OR4D5Q8NGN0 318 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 PSMF1Q92530 271 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 ADIPOR1Q96A54 375 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 C10orf35Q96D05 121 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 PRRG3Q9BZD7 231 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 AICDAQ9GZX7 198 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 CENPHQ9H3R5 247 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 AAMDCQ9H7C9 122 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 SPAG4Q9NPE6 437 aa5.3□□□□□ -1.56
VPS53-212ENST00000572259 RRAGDQ9NQL2 400 aaPredicted RBP5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms