RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 SGCDQ92629 289 aa8.04□□□□□ -1.12
VPS35-211ENST00000569950 OTULINQ96BN8 352 aa8.04□□□□□ -1.12
VPS35-211ENST00000569950 LGALS12Q96DT0 336 aa8.04□□□□□ -1.12
VPS35-211ENST00000569950 LRRC46Q96FV0 321 aa8.04□□□□□ -1.12
VPS35-211ENST00000569950 PLPPR2Q96GM1 343 aa8.04□□□□□ -1.12
VPS35-211ENST00000569950 INTS14Q96SY0 518 aa8.04□□□□□ -1.12
VPS35-211ENST00000569950 ZNF184Q99676 751 aaPredicted RBP8.04□□□□□ -1.12
VPS35-211ENST00000569950 ABHD6Q9BV23 337 aa8.04□□□□□ -1.12
VPS35-211ENST00000569950 PRRG3Q9BZD7 231 aa8.04□□□□□ -1.12
VPS35-211ENST00000569950 AMBNQ9NP70 447 aa8.04□□□□□ -1.12
VPS35-211ENST00000569950 DDX28Q9NUL7 540 aaKnown RBP8.04□□□□□ -1.12
VPS35-211ENST00000569950 FKBP14Q9NWM8 211 aa8.04□□□□□ -1.12
VPS35-211ENST00000569950 IMPAD1Q9NX62 359 aa8.04□□□□□ -1.12
VPS35-211ENST00000569950 WARS2Q9UGM6 360 aaKnown RBP8.04□□□□□ -1.12
VPS35-211ENST00000569950 NDRG3Q9UGV2 375 aa8.04□□□□□ -1.12
VPS35-211ENST00000569950 EXOGQ9Y2C4 368 aaKnown RBP8.04□□□□□ -1.12
VPS35-211ENST00000569950 MYRFQ9Y2G1 1151 aa8.04□□□□□ -1.12
VPS35-211ENST00000569950 TIMM10BQ9Y5J6 103 aa8.04□□□□□ -1.12
VPS35-211ENST00000569950 AKAP9Q99996 3911 aa8.04□□□□□ -1.12
VPS35-211ENST00000569950 CCDC168Q8NDH2 2452 aa8.04□□□□□ -1.12
VPS35-211ENST00000569950 USF3Q68DE3 2245 aa8.03□□□□□ -1.12
VPS35-211ENST00000569950 SLC22A31A6NKX4 558 aa8.03□□□□□ -1.12
VPS35-211ENST00000569950 C12orf71A8MTZ7 269 aa8.03□□□□□ -1.12
VPS35-211ENST00000569950 ATP6V1G2-DDX39BF2Z307 99 aa8.03□□□□□ -1.12
VPS35-211ENST00000569950 MAGEB4O15481 346 aaPredicted RBP8.03□□□□□ -1.12
VPS35-211ENST00000569950 SGCEO43556 437 aa8.03□□□□□ -1.12
VPS35-211ENST00000569950 DENRO43583 198 aaKnown RBP8.03□□□□□ -1.12
VPS35-211ENST00000569950 SRSF10O75494 262 aaKnown RBP8.03□□□□□ -1.12
VPS35-211ENST00000569950 CTAG2O75638 210 aa8.03□□□□□ -1.12
VPS35-211ENST00000569950 FARS2O95363 451 aaKnown RBP8.03□□□□□ -1.12
VPS35-211ENST00000569950 ABHD16AO95870 558 aa8.03□□□□□ -1.12
VPS35-211ENST00000569950 IGHA1P01876 353 aa8.03□□□□□ -1.12
VPS35-211ENST00000569950 OPRL1P41146 370 aa8.03□□□□□ -1.12
VPS35-211ENST00000569950 MTNR1AP48039 350 aa8.03□□□□□ -1.12
VPS35-211ENST00000569950 CENPAP49450 140 aa8.03□□□□□ -1.12
VPS35-211ENST00000569950 BLVRAP53004 296 aa8.03□□□□□ -1.12
VPS35-211ENST00000569950 UBE2NP61088 152 aaKnown RBP8.03□□□□□ -1.12
VPS35-211ENST00000569950 IL5RAQ01344 420 aa8.03□□□□□ -1.12
VPS35-211ENST00000569950 ZNF85Q03923 595 aa8.03□□□□□ -1.12
VPS35-211ENST00000569950 TMED1Q13445 227 aa8.03□□□□□ -1.12
VPS35-211ENST00000569950 RAB35Q15286 201 aa8.03□□□□□ -1.12
VPS35-211ENST00000569950 BEX5Q5H9J7 111 aa8.03□□□□□ -1.12
VPS35-211ENST00000569950 MEDAGQ5VYS4 303 aa8.03□□□□□ -1.12
VPS35-211ENST00000569950 COLCA1Q6ZS62 124 aa8.03□□□□□ -1.12
VPS35-211ENST00000569950 SLC16A9Q7RTY1 509 aa8.03□□□□□ -1.12
VPS35-211ENST00000569950 DCXRQ7Z4W1 244 aa8.03□□□□□ -1.12
VPS35-211ENST00000569950 THAP5Q7Z6K1 395 aa8.03□□□□□ -1.12
VPS35-211ENST00000569950 GID4Q8IVV7 300 aa8.03□□□□□ -1.12
VPS35-211ENST00000569950 ZNF101Q8IZC7 436 aa8.03□□□□□ -1.12
VPS35-211ENST00000569950 KBTBD8Q8NFY9 601 aa8.03□□□□□ -1.12
VPS35-211ENST00000569950 OR51G2Q8NGK0 314 aa8.03□□□□□ -1.12
VPS35-211ENST00000569950 OR6N2Q8NGY6 317 aa8.03□□□□□ -1.12
VPS35-211ENST00000569950 RNF133Q8WVZ7 376 aa8.03□□□□□ -1.12
VPS35-211ENST00000569950 MUCL1Q96DR8 90 aa8.03□□□□□ -1.12
VPS35-211ENST00000569950 APOL4Q9BPW4 351 aa8.03□□□□□ -1.12
VPS35-211ENST00000569950 WACQ9BTA9 647 aa8.03□□□□□ -1.12
VPS35-211ENST00000569950 TEX12Q9BXU0 123 aa8.03□□□□□ -1.12
VPS35-211ENST00000569950 YIPF3Q9GZM5 350 aa8.03□□□□□ -1.12
VPS35-211ENST00000569950 RASSF4Q9H2L5 321 aa8.03□□□□□ -1.12
VPS35-211ENST00000569950 PLCXD1Q9NUJ7 323 aa8.03□□□□□ -1.12
VPS35-211ENST00000569950 PAK1IP1Q9NWT1 392 aaPredicted RBP8.03□□□□□ -1.12
VPS35-211ENST00000569950 ATPIF1Q9UII2 106 aa8.03□□□□□ -1.12
VPS35-211ENST00000569950 RAB26Q9ULW5 256 aa8.03□□□□□ -1.12
VPS35-211ENST00000569950 OTOGQ6ZRI0 2925 aa8.02□□□□□ -1.13
VPS35-211ENST00000569950 E7EQL1 145 aa8.02□□□□□ -1.13
VPS35-211ENST00000569950 M0R1B8 84 aa8.02□□□□□ -1.13
VPS35-211ENST00000569950 ABCD4O14678 606 aa8.02□□□□□ -1.13
VPS35-211ENST00000569950 XPNPEP2O43895 674 aa8.02□□□□□ -1.13
VPS35-211ENST00000569950 MPZL2O60487 215 aa8.02□□□□□ -1.13
VPS35-211ENST00000569950 NGFP01138 241 aa8.02□□□□□ -1.13
VPS35-211ENST00000569950 HLA-DQA2P01906 255 aa8.02□□□□□ -1.13
VPS35-211ENST00000569950 HTR1AP08908 422 aa8.02□□□□□ -1.13
VPS35-211ENST00000569950 SPARCP09486 303 aa8.02□□□□□ -1.13
VPS35-211ENST00000569950 COX5BP10606 129 aa8.02□□□□□ -1.13
VPS35-211ENST00000569950 CAPZA2P47755 286 aa8.02□□□□□ -1.13
VPS35-211ENST00000569950 ROM1Q03395 351 aa8.02□□□□□ -1.13
VPS35-211ENST00000569950 SCRN3Q0VDG4 424 aa8.02□□□□□ -1.13
VPS35-211ENST00000569950 ELFN2Q5R3F8 820 aa8.02□□□□□ -1.13
VPS35-211ENST00000569950 C6orf141Q5SZD1 244 aa8.02□□□□□ -1.13
VPS35-211ENST00000569950 ALKBH2Q6NS38 261 aa8.02□□□□□ -1.13
VPS35-211ENST00000569950 SSX8Q7RTT4 187 aa8.02□□□□□ -1.13
VPS35-211ENST00000569950 NAA40Q86UY6 237 aa8.02□□□□□ -1.13
VPS35-211ENST00000569950 C8orf59Q8N0T1 100 aaPredicted RBP8.02□□□□□ -1.13
VPS35-211ENST00000569950 ZNF485Q8NCK3 441 aa8.02□□□□□ -1.13
VPS35-211ENST00000569950 SETD9Q8NE22 299 aa8.02□□□□□ -1.13
VPS35-211ENST00000569950 GJC3Q8NFK1 279 aa8.02□□□□□ -1.13
VPS35-211ENST00000569950 OR52I1Q8NGK6 324 aa8.02□□□□□ -1.13
VPS35-211ENST00000569950 OR1F12Q8NHA8 337 aa8.02□□□□□ -1.13
VPS35-211ENST00000569950 NANOS1Q8WY41 292 aaKnown RBP8.02□□□□□ -1.13
VPS35-211ENST00000569950 GGHQ92820 318 aa8.02□□□□□ -1.13
VPS35-211ENST00000569950 SLAMF6Q96DU3 332 aa8.02□□□□□ -1.13
VPS35-211ENST00000569950 RNFT2Q96EX2 444 aa8.02□□□□□ -1.13
VPS35-211ENST00000569950 C14orf79Q96F83 325 aa8.02□□□□□ -1.13
VPS35-211ENST00000569950 CNN2Q99439 309 aaKnown RBP8.02□□□□□ -1.13
VPS35-211ENST00000569950 COQ7Q99807 217 aa8.02□□□□□ -1.13
VPS35-211ENST00000569950 JAM3Q9BX67 310 aa8.02□□□□□ -1.13
VPS35-211ENST00000569950 VCXQ9H320 206 aa8.02□□□□□ -1.13
VPS35-211ENST00000569950 VCX3BQ9H321 246 aa8.02□□□□□ -1.13
VPS35-211ENST00000569950 POFUT1Q9H488 388 aa8.02□□□□□ -1.13
VPS35-211ENST00000569950 PLEKHF2Q9H8W4 249 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms